Prupe.8G221500_v2.0.a1

positive regulation of telomerase RNA localization to Cajal body

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
20086306 .. 20088190
1885 bp
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UTR
Exon/CDS
Intron
Prupe.8G221500.1

Sequence Viewer

Length: 195 bp
ATGTATCTCCAGTACTACATAAACGAGAATGGCGACAAAGTCTACACCACTAAGAAAGAATCACCACTGGGGCTTCCCACTCAATCTGCCCATCCGGCCCGCTTCTCCCCTGACGACATGTATTCAAGGCAAAGATTTCTCCTGAAGAAACGCTTTGGGTTGTTGCCGATCCAGCAGTCACCTCTGAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.57

Weight (kDa)

9.7

Isoelectric Point (pI)

69.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 1 cut(s) 126
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 54, 171
BccI CCATC 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 10, 72
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 2 cut(s) 10, 72
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 95
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 1 cut(s) 100
BspANI GGCC 1 cut(s) 98
BspPI GGATC 1 cut(s) 163
BsrI ACTGG 2 cut(s) 10, 72
BssMI GATC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 95, 172
BstNSI RCATGY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 118
CviJI RGCY 2 cut(s) 73, 98
CviKI_1 RGCY 2 cut(s) 73, 98
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 164
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 20, 119
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 107
FblI GTMKAC 1 cut(s) 42
FokI GGATG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 54, 171
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 172
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 23, 53, 108, 123, 155, 185
MaeIII GTNAC 1 cut(s) 177
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 157
MnlI CCTC 1 cut(s) 192
MseI TTAA 1 cut(s) 193
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 95, 172
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 38
PscI ACATGT 1 cut(s) 117
PspPI GGNCC 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 193
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 14
SetI ASST 1 cut(s) 184
SsiI CCGC 1 cut(s) 100
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
TspRI CASTG 1 cut(s) 72
Tth111I GACNNNGTC 1 cut(s) 38
XceI RCATGY 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.