Rh6CG302300

H ACA ribonucleoprotein complex subunit 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012395
Physical Location & Seq
Reverse (-)
48295455 .. 48301172
5718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG302300.1

Sequence Viewer

Length: 288 bp
ATGGGAAGAAGAGAACCCTCCTCCGCGCCTACATTTGAGCTTCTCAGGAGGTTGAATAAGAAAGAGTTACCATGTATCTTCAGTTCTACATCAACGAGAATGGTGATAAAGTCTACACCACCAAGAAAGAATCACCACTGGGGCTTGCTACGCAATCTGCCCACCCTGTCTCCTTTATCAATTGCAGCCCGCTTCTCCCCTGATGACAAGTATTCAAGGCAAAGATATCTTCTGAAGAAGCGCTTTGGATTGTTGCCAACCCAGCATAAAATGAAGCTTTTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nop10p

Protein Analysis

95

Amino Acids

11.12

Weight (kDa)

11.45

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop10p PF04135 62 - 82 3.5e-08 Nucleolar RNA-binding protein, Nop10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20490 AT2G20490 AT2G20490
fragaria_vesca FvH4_2g21220 FvH4_2g21220
malus_domestica MD05G1194800.v1.1 MD10G1181400.v1.1
prunus_persica Prupe.8G221500_v2.0.a1
pyrus_communis pycom05g18210 pycom10g15740
rosa_chinensis RchiOBHm_Chr6g0287721
rosa_multiflora Rmu_sc0003877.1_g000014
rosa_roxburghii Rroxscaffold_7G00181100 Rroxscaffold_7G00181250
rosa_rugosa Rorug06G0191300
rosa_samantha Rh6BG307200 Rh6CG302300 Rh6DG298900
rosa_wichuraiana Rw6G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 190
AcuI CTGAAG 2 cut(s) 64, 254
AfeI AGCGCT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 55, 216
AluBI AGCT 2 cut(s) 40, 277
AluI AGCT 2 cut(s) 40, 277
Alw26I GTCTC 1 cut(s) 174
Aor51HI AGCGCT 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 28, 243
AsuHPI GGTGA 2 cut(s) 115, 125
BbvI GCAGC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bse1I ACTGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 174
BspACI CCGC 2 cut(s) 24, 190
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 2 cut(s) 146, 190
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 28, 243
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 150, 262
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 146, 190
CfoI GCGC 2 cut(s) 28, 243
CviAII CATG 1 cut(s) 72
CviJI RGCY 4 cut(s) 40, 144, 188, 277
CviKI_1 RGCY 4 cut(s) 40, 144, 188, 277
DdeI CTNAG 1 cut(s) 44
DraI TTTAAA 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco32I GATATC 1 cut(s) 227
Eco47III AGCGCT 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 64, 254
EcoRV GATATC 1 cut(s) 227
FaeI CATG 1 cut(s) 75
FaiI YATR 2 cut(s) 73, 267
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 1 cut(s) 71
FauI CCCGC 1 cut(s) 197
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 2 cut(s) 27, 242
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 265
HaeII RGCGCY 1 cut(s) 244
HhaI GCGC 2 cut(s) 28, 243
Hin1II CATG 1 cut(s) 75
Hin6I GCGC 2 cut(s) 26, 241
HinP1I GCGC 2 cut(s) 26, 241
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 130
HphI GGTGA 2 cut(s) 115, 125
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 262
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 75
HspAI GCGC 2 cut(s) 26, 241
LpnPI CCDG 5 cut(s) 31, 124, 179, 213, 275
Lsp1109I GCAGC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 66
MboII GAAGA 5 cut(s) 18, 21, 70, 221, 247
MfeI CAATTG 1 cut(s) 180
MluCI AATT 1 cut(s) 180
MnlI CCTC 3 cut(s) 28, 31, 42
MseI TTAA 1 cut(s) 281
MunI CAATTG 1 cut(s) 180
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 150, 262
NlaIII CATG 1 cut(s) 75
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 261
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 186
SetI ASST 3 cut(s) 42, 53, 279
Sse9I AATT 1 cut(s) 180
SsiI CCGC 2 cut(s) 24, 190
TasI AATT 1 cut(s) 180
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 143
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 287
TspRI CASTG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.