pycom10g15740

H ACA ribonucleoprotein complex subunit 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012395
Physical Location & Seq
Forward (+)
18924508 .. 18925883
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15740.5

Sequence Viewer

Length: 294 bp
ATGCCTTCACTGACCTTAAACCCTAGCGCGGACGCCAAGCACTTTCTCATCCGCCTACATTTTGGAGCTCTCAGCAGTTTGAAGAAAAAAGCAGGCAGCATGTATCTTCAGTACTACATAAACGAGAATGGCAACAAAGTGTACACCACCAAGAAGGAATCACCACTTGGGCATGCTACACAATCTGCCCATCCCGCCCGCTTCTCCCCAGATGACAAATATTCAAGGCAAAGGTATCTTCTGAAGAAGCGCTTTGGATTGTTGCCAACCCAGCAGTCACCTCTAAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000723 GO:0000741 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0005730 GO:0005732 GO:0006139 GO:0006259 GO:0006278 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0010833 GO:0015030 GO:0016043 GO:0016070 GO:0016072 GO:0016073 GO:0016604 GO:0018130 GO:0019438 GO:0022613 GO:0030154 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032200 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0040031 GO:0042254 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0072588 GO:0072589 GO:0090304 GO:0090661 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1904872 GO:1904874 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nop10p

Protein Analysis

98

Amino Acids

11.09

Weight (kDa)

10.09

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20490 AT2G20490 AT2G20490
fragaria_vesca FvH4_2g21220 FvH4_2g21220
malus_domestica MD05G1194800.v1.1 MD10G1181400.v1.1
prunus_persica Prupe.8G221500_v2.0.a1
pyrus_communis pycom05g18210 pycom10g15740
rosa_chinensis RchiOBHm_Chr6g0287721
rosa_multiflora Rmu_sc0003877.1_g000014
rosa_roxburghii Rroxscaffold_7G00181100 Rroxscaffold_7G00181250
rosa_rugosa Rorug06G0191300
rosa_samantha Rh6BG307200 Rh6CG302300 Rh6DG298900
rosa_wichuraiana Rw6G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 4 cut(s) 29, 52, 195, 199
AcuI CTGAAG 2 cut(s) 92, 263
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 113, 143, 290
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 82, 225
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 96
AspLEI GCGC 2 cut(s) 29, 252
AsuHPI GGTGA 2 cut(s) 153, 270
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 198
BfaI CTAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmcAI AGTACT 2 cut(s) 113, 290
BsaHI GRCGYC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 48, 190
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 141
BspACI CCGC 4 cut(s) 29, 52, 195, 199
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 94, 174, 199
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 48, 190
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 2 cut(s) 29, 252
BstMWI GCNNNNNNNGC 2 cut(s) 194, 271
BstNSI RCATGY 2 cut(s) 103, 176
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 48, 190
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 94, 174, 199
CfoI GCGC 2 cut(s) 29, 252
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 112, 142, 289
CviAII CATG 2 cut(s) 100, 173
CviJI RGCY 1 cut(s) 68
CviKI_1 RGCY 1 cut(s) 68
CviQI GTAC 3 cut(s) 112, 142, 289
DdeI CTNAG 1 cut(s) 71
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 92, 263
EcoICRI GAGCTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 2 cut(s) 103, 176
FaiI YATR 3 cut(s) 101, 119, 174
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 2 cut(s) 99, 172
FauI CCCGC 2 cut(s) 202, 206
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 2 cut(s) 35, 177
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 24
GlaI GCGC 2 cut(s) 28, 251
GluI GCNGC 1 cut(s) 97
GsaI CCCAGC 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 253
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 29, 252
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 103, 176
Hin6I GCGC 2 cut(s) 27, 250
HinP1I GCGC 2 cut(s) 27, 250
HinfI GANTC 1 cut(s) 158
HphI GGTGA 2 cut(s) 153, 270
Hpy166II GTNNAC 2 cut(s) 142, 144
Hpy188I TCNGA 1 cut(s) 243
Hpy8I GTNNAC 2 cut(s) 142, 144
HpyAV CCTTC 2 cut(s) 15, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 271
HpyF3I CTNAG 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 103, 176
HspAI GCGC 2 cut(s) 27, 250
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 3 cut(s) 78, 222, 284
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 276
MboII GAAGA 4 cut(s) 94, 98, 230, 256
MhlI GDGCHC 1 cut(s) 70
MnlI CCTC 1 cut(s) 291
MseI TTAA 1 cut(s) 17
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 194, 271
NlaIII CATG 2 cut(s) 103, 176
NmuCI GTSAC 1 cut(s) 276
NspI RCATGY 2 cut(s) 103, 176
PaeI GCATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 270
RsaI GTAC 3 cut(s) 113, 143, 290
RsaNI GTAC 3 cut(s) 112, 142, 289
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 97
ScaI AGTACT 2 cut(s) 113, 290
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 17, 70, 236, 283
SphI GCATGC 1 cut(s) 176
SsiI CCGC 4 cut(s) 29, 52, 195, 199
SspI AATATT 1 cut(s) 221
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 70
TatI WGTACW 3 cut(s) 111, 141, 288
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 276
TspRI CASTG 1 cut(s) 15
XceI RCATGY 2 cut(s) 103, 176
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 2 cut(s) 113, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.