RchiOBHm_Chr6g0287721

H ACA ribonucleoprotein complex subunit 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012395
Physical Location & Seq
Forward (+)
51043112 .. 51044947
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25812

Sequence Viewer

Length: 195 bp
ATGTATCTTCAGTTCTACATCAACGAGAATGGTGATAAAGTCTACACCACCAAGAAAGAATCACCACTGGGGCTTGCTACGCAATCTGCCCACCCTGCCCGCTTCTCCCCTGATGACAAGTATTCAAGGCAAAGATATCTTCTGAAGAAGCGCTTTGGATTGTTGCCAACCCAGCAGTCTCCTCTCAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nop10p

Protein Analysis

64

Amino Acids

7.53

Weight (kDa)

9.79

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop10p PF04135 3 - 52 1.6e-20 Nucleolar RNA-binding protein, Nop10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20490 AT2G20490 AT2G20490
fragaria_vesca FvH4_2g21220 FvH4_2g21220
malus_domestica MD05G1194800.v1.1 MD10G1181400.v1.1
prunus_persica Prupe.8G221500_v2.0.a1
pyrus_communis pycom05g18210 pycom10g15740
rosa_chinensis RchiOBHm_Chr6g0287721
rosa_multiflora Rmu_sc0003877.1_g000014
rosa_roxburghii Rroxscaffold_7G00181100 Rroxscaffold_7G00181250
rosa_rugosa Rorug06G0191300
rosa_samantha Rh6BG307200 Rh6CG302300 Rh6DG298900
rosa_wichuraiana Rw6G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 164
AfeI AGCGCT 1 cut(s) 152
AgsI TTSAA 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 183
Aor51HI AGCGCT 1 cut(s) 152
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 44, 54
BcoDI GTCTC 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 183
BspACI CCGC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 75, 100
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 79, 95, 172
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 75, 100
CfoI GCGC 1 cut(s) 153
CviJI RGCY 1 cut(s) 73
CviKI_1 RGCY 1 cut(s) 73
Eco32I GATATC 1 cut(s) 137
Eco47III AGCGCT 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FauI CCCGC 1 cut(s) 107
FblI GTMKAC 1 cut(s) 42
GlaI GCGC 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 154
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 1 cut(s) 59
HphI GGTGA 2 cut(s) 44, 54
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 95, 172
HspAI GCGC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 53, 108, 123, 185
MboII GAAGA 2 cut(s) 131, 157
MnlI CCTC 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 79, 95, 172
PfeI GAWTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 171
PsrI GAACNNNNNNTAC 1 cut(s) 28
SsiI CCGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 1 cut(s) 72
TspRI CASTG 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.