AT2G20725

CAAX amino terminal protease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011002
Physical Location & Seq
Reverse (-)
8933317 .. 8935496
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20725.1

Sequence Viewer

Length: 906 bp
ATGATTCTAGGCCGATGGGTTTCCTTCAGTTGCGGAAACACGCCGGTGACTAATTGTTCCGAACGACGACGACATACGGAGTTTCGTCGTCTCTCCTCTGCTAGTACTTGTCGACCTTCTCTCATATGCTCTTGTCTCAAAAGCAAATCCTCCCAAGAAACTACTCAGATTGAACAGTTGGGGAATGGAGAAGGGTTCTCAGTTTTGGCATCAGAGATTCCATGGGAGGATGATAACATATGGAGCACATTTGCTCTTTACATGTTCTCTCTGCATATTCCTCTCAGTTTTGGGGGTTTATCCATTGTTGCCAACATACTCCACCGGCAGGTTCTTGATCCTCAGACCCAAGTGCTATCACTTGTGGTTCTCCAAATGGTAGAACTTGCAGGGACAGTCTTGCTGCTGAGGACCACAGCGAAGCCTCAGTGCAAATCAATCAACTTTCTAAAGGGTAATAACGAAACAAGGGAAGGAAGAAACTGGGTGGTTGGCTCAGCATTGGGTTTGGGATGTCTTGTGGGCTTTATCTTCGTCACGTCGCTTGTAGCTGATCAACTCTTTGGCCCTAAGGCTGTACATGAATCAGAATTGGAGAAGATAATGGTGAGCGGGGAAGTGGCGAGAAGCGGATGTTTTGCTCTCTACTGCGTAGTAGCTCCCATCCTTGAGGAGATAGTGTACAGACGCTTTCTCCTGACCTCCTTAGCGTCGAGAATGGAATGGTGGAAGGCACTAGTGATCAGCTCAGGAGTATTTGCTGCAGGTCACTTCTCAGGTGAGGATTTTGTGCAGCTGTTTGGGATAGGTTGCGGTCTCGGGTTATGTTACAGCTGGTCAGGGAACTTAGCCTCATCAGTGCTCGTCCACTCCTTGTACAATGCATTGACACTTCTCTTCTCTTAG

Protein Analysis

301

Amino Acids

33.02

Weight (kDa)

6.98

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 213 - 296 2.4e-19 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 319, 755
AccBSI CCGCTC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 112
AciI CCGC 4 cut(s) 33, 612, 630, 813
AclWI GGATC 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 10
AfaI GTAC 4 cut(s) 106, 579, 683, 878
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 1 cut(s) 173
AhlI ACTAGT 1 cut(s) 736
AjiI CACGTC 1 cut(s) 540
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 5 cut(s) 551, 659, 747, 796, 834
AluI AGCT 5 cut(s) 551, 659, 747, 796, 834
Alw21I GWGCWC 2 cut(s) 248, 864
Alw26I GTCTC 3 cut(s) 95, 140, 821
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 2 cut(s) 10, 565
ApeKI GCWGC 3 cut(s) 403, 761, 793
AspS9I GGNCC 2 cut(s) 411, 566
AsuHPI GGTGA 3 cut(s) 58, 619, 791
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 1 cut(s) 411
AxyI CCTNAGG 1 cut(s) 570
Bbv12I GWGCWC 2 cut(s) 248, 864
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 390, 748, 805
BccI CCATC 2 cut(s) 9, 671
BclI TGATCA 2 cut(s) 553, 741
BcoDI GTCTC 3 cut(s) 95, 140, 821
BcuI ACTAGT 1 cut(s) 736
BfaI CTAG 3 cut(s) 8, 102, 737
BfmI CTRYAG 1 cut(s) 762
BfuAI ACCTGC 2 cut(s) 319, 755
BisI GCNGC 3 cut(s) 404, 762, 794
BlpI GCTNAGC 1 cut(s) 496
BlsI GCNGC 3 cut(s) 405, 763, 795
BmcAI AGTACT 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 411
BmeT110I CYCGRG 1 cut(s) 818
BmgBI CACGTC 1 cut(s) 540
BmgT120I GGNCC 2 cut(s) 411, 566
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 493
Bpu10I CCTNAGC 3 cut(s) 407, 706, 748
Bpu1102I GCTNAGC 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 821
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 665, 678, 695, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse118I RCCGGY 2 cut(s) 43, 324
Bse1I ACTGG 1 cut(s) 488
Bse21I CCTNAGG 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 4 cut(s) 235, 518, 638, 663
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 9 cut(s) 179, 213, 298, 356, 398, 440, 510, 762, 789
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 2 cut(s) 85, 686
BseXI GCAGC 3 cut(s) 390, 748, 805
BsgI GTGCAG 1 cut(s) 812
BshFI GGCC 2 cut(s) 12, 567
BsiHKAI GWGCWC 2 cut(s) 248, 864
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 2 cut(s) 44, 325
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 3 cut(s) 95, 140, 821
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 2 cut(s) 12, 567
Bso31I GGTCTC 1 cut(s) 821
BsoBI CYCGRG 1 cut(s) 818
Bsp1286I GDGCHC 2 cut(s) 248, 864
Bsp1407I TGTACA 3 cut(s) 577, 681, 876
Bsp143I GATC 3 cut(s) 337, 553, 741
Bsp1720I GCTNAGC 1 cut(s) 496
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 4 cut(s) 33, 612, 630, 813
BspANI GGCC 2 cut(s) 12, 567
BspCNI CTCAG 9 cut(s) 178, 212, 297, 355, 399, 439, 509, 761, 788
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 2 cut(s) 319, 755
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 43, 324
BsrGI TGTACA 3 cut(s) 577, 681, 876
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 2 cut(s) 43, 324
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 3 cut(s) 337, 553, 741
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 177, 397
Bst6I CTCTTC 1 cut(s) 902
BstAUI TGTACA 3 cut(s) 577, 681, 876
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 4 cut(s) 235, 518, 638, 663
BstKTI GATC 3 cut(s) 340, 556, 744
BstMAI GTCTC 3 cut(s) 95, 140, 821
BstMBI GATC 3 cut(s) 337, 553, 741
BstNSI RCATGY 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 3 cut(s) 390, 748, 805
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 2 cut(s) 12, 567
BtgI CCRYGG 1 cut(s) 221
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 4 cut(s) 235, 518, 638, 663
BtsIMutI CAGTG 2 cut(s) 434, 864
BveI ACCTGC 2 cut(s) 319, 755
Cfr10I RCCGGY 2 cut(s) 43, 324
Cfr13I GGNCC 2 cut(s) 411, 566
CseI GACGC 2 cut(s) 696, 699
Csp6I GTAC 4 cut(s) 105, 578, 682, 877
CviAII CATG 3 cut(s) 222, 262, 581
CviQI GTAC 4 cut(s) 105, 578, 682, 877
DpnI GATC 3 cut(s) 339, 555, 743
DpnII GATC 3 cut(s) 337, 553, 741
Eam1104I CTCTTC 1 cut(s) 902
EarI CTCTTC 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 821
Eco47I GGWCC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 886
ErhI CCWWGG 1 cut(s) 221
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 225, 265, 584
FaqI GGGAC 1 cut(s) 406
FatI CATG 3 cut(s) 221, 261, 580
FauI CCCGC 1 cut(s) 605
FauNDI CATATG 2 cut(s) 125, 239
FbaI TGATCA 2 cut(s) 553, 741
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 404, 762, 794
FokI GGATG 4 cut(s) 242, 525, 645, 650
Fsp4HI GCNGC 3 cut(s) 404, 762, 794
FspBI CTAG 3 cut(s) 8, 102, 737
GluI GCNGC 3 cut(s) 404, 762, 794
HaeIII GGCC 2 cut(s) 12, 567
HapII CCGG 2 cut(s) 44, 325
HgaI GACGC 2 cut(s) 696, 699
Hin1II CATG 3 cut(s) 225, 265, 584
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 3 cut(s) 4, 217, 584
HpaII CCGG 2 cut(s) 44, 325
HphI GGTGA 3 cut(s) 58, 619, 791
Hpy166II GTNNAC 3 cut(s) 113, 682, 868
Hpy188I TCNGA 5 cut(s) 61, 168, 214, 345, 589
Hpy188III TCNNGA 4 cut(s) 335, 697, 714, 750
Hpy8I GTNNAC 3 cut(s) 113, 682, 868
Hpy99I CGWCG 5 cut(s) 69, 72, 90, 544, 715
HpyAV CCTTC 5 cut(s) 34, 126, 185, 467, 724
HpyCH4III ACNGT 2 cut(s) 177, 397
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 6 cut(s) 274, 389, 432, 764, 793, 884
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 3 cut(s) 225, 265, 584
Ksp22I TGATCA 2 cut(s) 553, 741
Kzo9I GATC 3 cut(s) 337, 553, 741
LmnI GCTCC 2 cut(s) 243, 664
Lsp1109I GCAGC 3 cut(s) 390, 748, 805
LweI GCATC 1 cut(s) 218
MaeI CTAG 3 cut(s) 8, 102, 737
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 4 cut(s) 46, 535, 767, 827
MalI GATC 3 cut(s) 339, 555, 743
MbiI CCGCTC 1 cut(s) 612
MboI GATC 3 cut(s) 337, 553, 741
MboII GAAGA 4 cut(s) 489, 523, 610, 889
MhlI GDGCHC 2 cut(s) 248, 864
MluCI AATT 2 cut(s) 52, 590
Mph1103I ATGCAT 1 cut(s) 886
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 2 cut(s) 796, 834
MspI CCGG 2 cut(s) 44, 325
NcoI CCATGG 1 cut(s) 221
NdeI CATATG 2 cut(s) 125, 239
NdeII GATC 3 cut(s) 337, 553, 741
NlaIII CATG 3 cut(s) 225, 265, 584
NmuCI GTSAC 3 cut(s) 46, 535, 767
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 44
PciI ACATGT 1 cut(s) 261
PfeI GAWTC 3 cut(s) 4, 217, 584
PkrI GCNGC 3 cut(s) 405, 763, 795
PscI ACATGT 1 cut(s) 261
PspPI GGNCC 2 cut(s) 411, 566
PstI CTGCAG 1 cut(s) 766
PvuII CAGCTG 2 cut(s) 796, 834
RsaI GTAC 4 cut(s) 106, 579, 683, 878
RsaNI GTAC 4 cut(s) 105, 578, 682, 877
RseI CAYNNNNRTG 1 cut(s) 44
SalI GTCGAC 1 cut(s) 111
SatI GCNGC 3 cut(s) 404, 762, 794
Sau3AI GATC 3 cut(s) 337, 553, 741
Sau96I GGNCC 2 cut(s) 411, 566
ScaI AGTACT 1 cut(s) 106
SduI GDGCHC 2 cut(s) 248, 864
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 762
SgrAI CRCCGGYG 1 cut(s) 43
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SpeI ACTAGT 1 cut(s) 736
Sse9I AATT 2 cut(s) 52, 590
SsiI CCGC 4 cut(s) 33, 612, 630, 813
SspMI CTAG 3 cut(s) 8, 102, 737
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 177, 397
TaiI ACGT 1 cut(s) 542
TaqI TCGA 2 cut(s) 112, 713
TasI AATT 2 cut(s) 52, 590
TatI WGTACW 4 cut(s) 104, 577, 681, 876
TfiI GAWTC 3 cut(s) 4, 217, 584
TscAI CASTG 2 cut(s) 434, 864
TseFI GTSAC 3 cut(s) 46, 535, 767
TseI GCWGC 3 cut(s) 403, 761, 793
Tsp45I GTSAC 3 cut(s) 46, 535, 767
TspDTI ATGAA 1 cut(s) 597
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 434, 864
VpaK11BI GGWCC 1 cut(s) 411
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 3 cut(s) 8, 102, 737
ZrmI AGTACT 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.