Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Forward (+)

14327209 .. 14332748

Gene Structure 5540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCATCCTCATTTTGTTTGCAACAGTCAATGTTCGAGCAAAATATTCAATGACTGTTTCTCCATTCTTCATTTGCAACATCTCGAACTCTTTGCGAAGAGCTTGCAGTTGTGCACCCGCCATCCTCCGCCACCGCCTTCAAAAGAGAGGAGCTGGCTGTTGGCAACAGCCATAGGATTTGGGTTTCTTTTCATATTGGTTTTCCTTACTTCCTTGCTGACAGTATTGTTGGGCCCAAGGTTCGCTATAAAAAACCCTGTACTCAAAGAAATCGTGGTAAGCAGCAACGTCTCAAAAGCTGCTTGCGTTCTTGTGTATTGCATTGTCACTCCCGTGCTGGAAGAAACTATTTACAGGGGATTTTTATTAGCGTCGATTTCGTTCACTATGAAATGGCAGTCAGCAGTTTTGATAAGCTCAGCTATTTTTAGTGCAGCTCACTTGTCTGGTGAGAATTCCTTACAGTTGTTCATCATTGGATGTGTGCTTGGATGCTCTTATTGTTCGACTGGAAACTCGAGATCTCCCATGTTAATACATTCCCTGAATTTGGTATTGGCCTGTCCACCCTGTCATGATAATAAATTCCAGCCCAGATTTATATGCCCAAGGAGTGGTCCCAGCAAAATGGGTGGGCCCCAAACACTGATGCCACAGGCTCAGCTGGGTTCAATTCTCAATTTTGAATTAAGAACCCACACATGTCACATGCCACCGAAAACCAGAAGGAAGAGAATGGCTGGGTTTGAGCATAAGGTGAAGGAGAGGGCCAGGGAGCTGACGATCTTGGTGAAGAAGGGAGTGAAGGTCGTGGGAGATTCGTGCAAGAAAGGGTGGTACAAGGTCAAGCACATCAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

288

Amino Acids

32.02

Weight (kDa)

9.77

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	3 cut(s)	118, 128, 134
AcsI	RAATTY	3 cut(s)	454, 547, 584
AfaI	GTAC	2 cut(s)	261, 839
AfiI	CCNNNNNNNGG	2 cut(s)	550, 614
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	49, 141, 672, 686
AjnI	CCWGG	1 cut(s)	770
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	8 cut(s)	102, 153, 299, 417, 422, 437, 664, 778
AluI	AGCT	8 cut(s)	102, 153, 299, 417, 422, 437, 664, 778
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	861
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	4 cut(s)	232, 558, 635, 768
ApaI	GGGCCC	2 cut(s)	236, 639
ApaLI	GTGCAC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	282, 299, 434
ApoI	RAATTY	3 cut(s)	454, 547, 584
AspS9I	GGNCC	6 cut(s)	232, 233, 617, 635, 636, 768
AsuHPI	GGTGA	3 cut(s)	461, 769, 802
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	617
BaeGI	GKGCMC	3 cut(s)	116, 236, 639
BanII	GRGCYC	2 cut(s)	236, 639
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	286, 294, 446
BccI	CCATC	1 cut(s)	129
BcgI	CGANNNNNNTGC	4 cut(s)	74, 85, 108, 119
BciT130I	CCWGG	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	3 cut(s)	283, 300, 435
BlpI	GCTNAGC	2 cut(s)	418, 660
BlsI	GCNGC	3 cut(s)	284, 301, 436
Bme1390I	CCNGG	1 cut(s)	772
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	6 cut(s)	232, 233, 617, 635, 636, 768
BmiI	GGNNCC	4 cut(s)	234, 619, 637, 638
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	3 cut(s)	13, 482, 639
Bpu1102I	GCTNAGC	2 cut(s)	418, 660
BsaJI	CCNNGG	3 cut(s)	236, 608, 771
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 792, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 614
Bse1I	ACTGG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	236, 608, 771
BseGI	GGATG	4 cut(s)	4, 121, 485, 497
BseLI	CCNNNNNNNGG	2 cut(s)	550, 614
BseMII	CTCAG	2 cut(s)	432, 674
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	3 cut(s)	116, 236, 639
BseXI	GCAGC	3 cut(s)	286, 294, 446
BseYI	CCCAGC	3 cut(s)	620, 664, 740
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	234, 560, 637, 770
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	550, 614
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	4 cut(s)	234, 560, 637, 770
BsoBI	CYCGRG	1 cut(s)	517
Bsp120I	GGGCCC	2 cut(s)	232, 635
Bsp1286I	GDGCHC	3 cut(s)	116, 236, 639
Bsp143I	GATC	2 cut(s)	521, 783
Bsp1720I	GCTNAGC	2 cut(s)	418, 660
BspACI	CCGC	3 cut(s)	118, 128, 134
BspANI	GGCC	4 cut(s)	234, 560, 637, 770
BspCNI	CTCAG	2 cut(s)	431, 673
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	4 cut(s)	234, 619, 637, 638
BspQI	GCTCTTC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	236, 608, 771
BssMI	GATC	2 cut(s)	521, 783
BssT1I	CCWWGG	2 cut(s)	236, 608
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	4 cut(s)	26, 56, 223, 465
Bst6I	CTCTTC	2 cut(s)	92, 725
BstC8I	GCNNGC	3 cut(s)	104, 155, 304
BstDEI	CTNAG	2 cut(s)	418, 660
BstF5I	GGATG	4 cut(s)	4, 121, 485, 497
BstKTI	GATC	2 cut(s)	524, 786
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	521, 783
BstNI	CCWGG	1 cut(s)	772
BstNSI	RCATGY	2 cut(s)	705, 712
BstSCI	CCNGG	1 cut(s)	770
BstSLI	GKGCMC	3 cut(s)	116, 236, 639
BstV1I	GCAGC	3 cut(s)	286, 294, 446
BstX2I	RGATCY	1 cut(s)	521
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	234, 560, 637, 770
BtsCI	GGATG	4 cut(s)	4, 121, 485, 497
BtsIMutI	CAGTG	1 cut(s)	644
Cac8I	GCNNGC	3 cut(s)	104, 155, 304
CaiI	CAGNNNCTG	1 cut(s)	861
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	6 cut(s)	232, 233, 617, 635, 636, 768
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	260, 838
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	4 cut(s)	529, 575, 702, 709
CviQI	GTAC	2 cut(s)	260, 838
DdeI	CTNAG	2 cut(s)	418, 660
DpnI	GATC	2 cut(s)	523, 785
DpnII	GATC	2 cut(s)	521, 783
Eam1104I	CTCTTC	2 cut(s)	92, 725
EarI	CTCTTC	2 cut(s)	92, 725
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	236, 608
Eco24I	GRGCYC	2 cut(s)	236, 639
Eco47I	GGWCC	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	770
EcoT14I	CCWWGG	2 cut(s)	236, 608
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	236, 639
ErhI	CCWWGG	2 cut(s)	236, 608
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	4 cut(s)	532, 578, 705, 712
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	4 cut(s)	528, 574, 701, 708
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	283, 300, 435
FokI	GGATG	3 cut(s)	108, 492, 504
FriOI	GRGCYC	2 cut(s)	236, 639
Fsp4HI	GCNGC	3 cut(s)	283, 300, 435
GluI	GCNGC	3 cut(s)	283, 300, 435
GsaI	CCCAGC	3 cut(s)	624, 668, 744
HaeIII	GGCC	4 cut(s)	234, 560, 637, 770
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	532, 578, 705, 712
HinfI	GANTC	1 cut(s)	818
HphI	GGTGA	3 cut(s)	461, 769, 802
Hpy166II	GTNNAC	3 cut(s)	114, 384, 566
Hpy188I	TCNGA	1 cut(s)	857
Hpy188III	TCNNGA	3 cut(s)	83, 519, 575
Hpy8I	GTNNAC	3 cut(s)	114, 384, 566
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	5 cut(s)	147, 720, 754, 790, 799
HpyCH4III	ACNGT	4 cut(s)	26, 56, 223, 465
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	8 cut(s)	4, 21, 76, 106, 114, 321, 434, 825
HpyF3I	CTNAG	2 cut(s)	418, 660
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	532, 578, 705, 712
Kzo9I	GATC	2 cut(s)	521, 783
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	150, 775
Lsp1109I	GCAGC	3 cut(s)	286, 294, 446
LweI	GCATC	3 cut(s)	13, 482, 639
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	325, 704
MalI	GATC	2 cut(s)	523, 785
MboI	GATC	2 cut(s)	521, 783
MboII	GAAGA	5 cut(s)	59, 109, 353, 742, 805
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	116, 236, 639
MluCI	AATT	6 cut(s)	454, 547, 584, 672, 679, 686
MnlI	CCTC	4 cut(s)	18, 135, 141, 759
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	533, 689
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	772
NdeII	GATC	2 cut(s)	521, 783
NlaIII	CATG	4 cut(s)	532, 578, 705, 712
NlaIV	GGNNCC	4 cut(s)	234, 619, 637, 638
NmuCI	GTSAC	2 cut(s)	325, 704
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	705, 712
OliI	CACNNNNGTG	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	574
PciI	ACATGT	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	818
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	284, 301, 436
PscI	ACATGT	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	770
PspFI	CCCAGC	3 cut(s)	620, 664, 740
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	4 cut(s)	234, 619, 637, 638
PspOMI	GGGCCC	2 cut(s)	232, 635
PspPI	GGNCC	6 cut(s)	232, 233, 617, 635, 636, 768
PstNI	CAGNNNCTG	1 cut(s)	861
PsuI	RGATCY	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	2 cut(s)	261, 839
RsaNI	GTAC	2 cut(s)	260, 838
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	533, 689
SatI	GCNGC	3 cut(s)	283, 300, 435
Sau3AI	GATC	2 cut(s)	521, 783
Sau96I	GGNCC	6 cut(s)	232, 233, 617, 635, 636, 768
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	3 cut(s)	116, 236, 639
SfaNI	GCATC	3 cut(s)	13, 482, 639
Sfr274I	CTCGAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	6 cut(s)	454, 547, 584, 672, 679, 686
SsiI	CCGC	3 cut(s)	118, 128, 134
SspI	AATATT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	2 cut(s)	236, 608
TaaI	ACNGT	4 cut(s)	26, 56, 223, 465
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	5 cut(s)	35, 84, 374, 506, 518
TasI	AATT	6 cut(s)	454, 547, 584, 672, 679, 686
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	818
Tru1I	TTAA	2 cut(s)	533, 689
Tru9I	TTAA	2 cut(s)	533, 689
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	2 cut(s)	325, 704
TseI	GCWGC	3 cut(s)	282, 299, 434
Tsp45I	GTSAC	2 cut(s)	325, 704
TspDTI	ATGAA	4 cut(s)	59, 181, 404, 460
TspRI	CASTG	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	614
VneI	GTGCAC	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	3 cut(s)	454, 547, 584
XceI	RCATGY	2 cut(s)	705, 712
XhoI	CTCGAG	1 cut(s)	517
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.