Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005203.1

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Forward (+)

25334 .. 28096

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgtatccaaccacacctacaaaattatccattggggattttacgtcaaaactcaaactcccgtcaccctctccgtctccatctcctggtgctcttctcctttgcacgaatttcaaatccagcttaacctcaaaaccagattctatcaagtgcttttgtaacaaaactgacaacacccaacaagtctctcagggcttctcagcactggcggcagatagtccatgggacgttgcaactgtgtggagcactctggctttctatatcttcagtttgcacattcctcttagttttggaggtttgtctgtggttgcttatgtactgaatcagcctgttcttgacccacagattgaggcaatatcgttgcttggagctcagtttctagagctcattgcagcaatgcttcttctgcagagtactgctaagccacagtataagtttgcgaacttcttcaaagctaacaaattgtcaaaagagaggagctggctgttggtatcagctgtaggatttgggtttctctttgtgttggttttccttacgtcttttcttgctgatagattcattggtccaaaggatataaacaaccctgtactgaaggaaatcctgctaagcagcgacatctcaaaagctgcatgtttctttgtatactgcgttattactcccctgctggaagagactgtttaccgaggttttttattgacatcaatgtcatccaccatgaaatggcagtcagctgttttgataagctcagctatatttagtgcagctcacttctctggtgagaatttcctacagttgtttattattggaagtgtccttggatgctcttattgttggactggaaacttgggttcctccattttaatacattccctgtacaacgccctgaccctaatgataacattcttatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

303

Amino Acids

33.09

Weight (kDa)

8.41

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccB7I	CCANNNNNTGG	2 cut(s)	86, 720
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	109, 781
AcuI	CTGAAG	2 cut(s)	250, 611
AfaI	GTAC	4 cut(s)	318, 415, 588, 875
AfiI	CCNNNNNNNGG	2 cut(s)	86, 720
AgsI	TTSAA	2 cut(s)	115, 451
AjnI	CCWGG	1 cut(s)	85
Alw21I	GWGCWC	4 cut(s)	94, 248, 373, 387
Alw26I	GTCTC	3 cut(s)	81, 190, 665
ApeKI	GCWGC	4 cut(s)	392, 609, 626, 761
ApoI	RAATTY	2 cut(s)	109, 781
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	2 cut(s)	57, 788
AvaII	GGWCC	1 cut(s)	563
BanII	GRGCYC	2 cut(s)	373, 387
Bbv12I	GWGCWC	4 cut(s)	94, 248, 373, 387
BbvI	GCAGC	4 cut(s)	404, 613, 621, 773
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	3 cut(s)	81, 190, 665
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	3 cut(s)	407, 498, 788
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	5 cut(s)	210, 393, 610, 627, 762
BlpI	GCTNAGC	3 cut(s)	420, 605, 745
BlsI	GCNGC	5 cut(s)	211, 394, 611, 628, 763
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	850
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	809
Bpu1102I	GCTNAGC	3 cut(s)	420, 605, 745
BsaJI	CCNNGG	3 cut(s)	221, 682, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 720
Bse1I	ACTGG	2 cut(s)	210, 841
Bse3DI	GCAATG	2 cut(s)	387, 402
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	221, 682, 814
BseGI	GGATG	2 cut(s)	707, 824
BseLI	CCNNNNNNNGG	2 cut(s)	86, 720
BseMI	GCAATG	2 cut(s)	387, 402
BseMII	CTCAG	4 cut(s)	203, 213, 386, 759
BseNI	ACTGG	2 cut(s)	210, 841
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	4 cut(s)	404, 613, 621, 773
BsgI	GTGCAG	1 cut(s)	780
BsiHKAI	GWGCWC	4 cut(s)	94, 248, 373, 387
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	86, 720
BsmAI	GTCTC	3 cut(s)	81, 190, 665
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	94, 248, 373, 387
Bsp1407I	TGTACA	1 cut(s)	873
Bsp1720I	GCTNAGC	3 cut(s)	420, 605, 745
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	4 cut(s)	202, 212, 385, 758
BspLI	GGNNCC	1 cut(s)	850
BspMAI	CTGCAG	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	99
BsrDI	GCAATG	2 cut(s)	387, 402
BsrGI	TGTACA	1 cut(s)	873
BsrI	ACTGG	2 cut(s)	210, 841
BssECI	CCNNGG	3 cut(s)	221, 682, 814
BssNAI	GTATAC	1 cut(s)	643
BssT1I	CCWWGG	2 cut(s)	221, 814
Bst1107I	GTATAC	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	4 cut(s)	238, 429, 676, 792
Bst6I	CTCTTC	2 cut(s)	99, 663
BstAUI	TGTACA	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	7 cut(s)	189, 199, 284, 372, 420, 605, 745
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	707, 824
BstMAI	GTCTC	3 cut(s)	81, 190, 665
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 406
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	3 cut(s)	407, 498, 788
BstV1I	GCAGC	4 cut(s)	404, 613, 621, 773
BstZ17I	GTATAC	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	707, 824
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	563
Csp6I	GTAC	4 cut(s)	317, 414, 587, 874
CviAII	CATG	3 cut(s)	222, 630, 715
CviQI	GTAC	4 cut(s)	317, 414, 587, 874
DdeI	CTNAG	7 cut(s)	189, 199, 284, 372, 420, 605, 745
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	99, 663
EarI	CTCTTC	2 cut(s)	99, 663
Ecl136II	GAGCTC	2 cut(s)	371, 385
Eco130I	CCWWGG	2 cut(s)	221, 814
Eco24I	GRGCYC	2 cut(s)	373, 387
Eco47I	GGWCC	1 cut(s)	563
Eco53kI	GAGCTC	2 cut(s)	371, 385
Eco57I	CTGAAG	2 cut(s)	250, 611
EcoICRI	GAGCTC	2 cut(s)	371, 385
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	221, 814
EcoT38I	GRGCYC	2 cut(s)	373, 387
ErhI	CCWWGG	2 cut(s)	221, 814
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	3 cut(s)	225, 633, 718
FaiI	YATR	9 cut(s)	223, 261, 315, 432, 575, 631, 643, 716, 752
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	221, 629, 714
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	5 cut(s)	210, 393, 610, 627, 762
FokI	GGATG	2 cut(s)	694, 831
FriOI	GRGCYC	2 cut(s)	373, 387
Fsp4HI	GCNGC	5 cut(s)	210, 393, 610, 627, 762
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	5 cut(s)	210, 393, 610, 627, 762
Hin1II	CATG	3 cut(s)	225, 633, 718
HinfI	GANTC	3 cut(s)	140, 322, 555
HphI	GGTGA	2 cut(s)	57, 788
Hpy166II	GTNNAC	2 cut(s)	643, 679
Hpy188III	TCNNGA	2 cut(s)	335, 380
Hpy8I	GTNNAC	2 cut(s)	643, 679
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	4 cut(s)	238, 429, 676, 792
HpyCH4IV	ACGT	3 cut(s)	44, 228, 536
HpyCH4V	TGCA	7 cut(s)	105, 233, 274, 392, 409, 629, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 406
HpyF3I	CTNAG	7 cut(s)	189, 199, 284, 372, 420, 605, 745
HpySE526I	ACGT	3 cut(s)	44, 228, 536
Hsp92II	CATG	3 cut(s)	225, 633, 718
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	243, 368, 477
Lsp1109I	GCAGC	4 cut(s)	404, 613, 621, 773
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	3 cut(s)	44, 228, 536
MaeIII	GTNAC	2 cut(s)	63, 158
MboII	GAAGA	5 cut(s)	86, 256, 395, 439, 680
MhlI	GDGCHC	4 cut(s)	94, 248, 373, 387
MluCI	AATT	4 cut(s)	23, 109, 461, 781
MmeI	TCCRAC	2 cut(s)	32, 812
MnlI	CCTC	8 cut(s)	79, 139, 287, 291, 343, 468, 677, 862
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	2 cut(s)	125, 860
MspA1I	CMGCKG	2 cut(s)	497, 731
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	209, 406
NcoI	CCATGG	1 cut(s)	221
NlaIII	CATG	3 cut(s)	225, 633, 718
NlaIV	GGNNCC	1 cut(s)	850
NmuCI	GTSAC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	633
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	140, 322, 555
PflMI	CCANNNNNTGG	2 cut(s)	86, 720
PkrI	GCNGC	5 cut(s)	211, 394, 611, 628, 763
Psp124BI	GAGCTC	2 cut(s)	373, 387
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	1 cut(s)	411
PvuII	CAGCTG	2 cut(s)	497, 731
RsaI	GTAC	4 cut(s)	318, 415, 588, 875
RsaNI	GTAC	4 cut(s)	317, 414, 587, 874
SacI	GAGCTC	2 cut(s)	373, 387
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	125, 860
SatI	GCNGC	5 cut(s)	210, 393, 610, 627, 762
Sau96I	GGNCC	1 cut(s)	563
ScaI	AGTACT	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	4 cut(s)	94, 248, 373, 387
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	3 cut(s)	407, 498, 788
SinI	GGWCC	1 cut(s)	563
Sse9I	AATT	4 cut(s)	23, 109, 461, 781
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	2 cut(s)	373, 387
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	221, 814
TaaI	ACNGT	4 cut(s)	238, 429, 676, 792
TaiI	ACGT	3 cut(s)	47, 231, 539
TasI	AATT	4 cut(s)	23, 109, 461, 781
TatI	WGTACW	4 cut(s)	316, 413, 586, 873
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	140, 322, 555
Tru1I	TTAA	2 cut(s)	125, 860
Tru9I	TTAA	2 cut(s)	125, 860
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	4 cut(s)	392, 609, 626, 761
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	547, 731
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	210
Van91I	CCANNNNNTGG	2 cut(s)	86, 720
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	2 cut(s)	109, 781
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.