Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Reverse (-)

31871332 .. 31874340

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1249200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATAGAATGTCAGTGGCAACTGTGGCATCCTGCAACTGTATACCCTACAGCACCTGAAAAACTCATTGGATTTGGAGGACATGTTTCCAATCCCCTAACTTCCTCTCTTTCTCCCCACACTTCTCTCTCTTGCACCAAGTTCAAATCCACCAGCTACTTATGCAGCTCCAAACATTGTTTCAAGTGCTTTTGTGACAAAACTGAAAGTACCCATGAACCCTCTTCCCAGGGGTTTTCGGCACTGGCAGCAGATGCTCCATGGGACTATGGAACTGTGTGGAGCACTATGGCTTTCTATATGTTCAGTTTGCACATCCCTCTGAGTTTTGGATGGTTGTCTGTGGTTGCTCATCTGTTGCATGAACCTGTACCTGATCCACAGACAGAGGCAATATCATTGCTTGGAGCTCAAACTCTAGAGCTCATTGCAGCTCTGCTGCTTCTGCAGAGTACTGCCAAGCCACAATATAAGTTTGTGAATTTCTTCAAAGCTAACAAACTATCAAAAGAGAGGAGCTGGCTGTTGGCATCTGTCGTAGGATTTGGGTTTCTGTTCATGTTGGTTTTCCTAACTTCCTTCCTTGCTGATAGAGTCGTTGGCCCCAAGGATATAAACAACCCCGTTCTGAAGGAAATCTTGTTGAGCAGCAACATCTCACAAGCTGCTTGTGTCCTCGTATACTGCTTTATCACTCCCGTGCTGGAAGAAACTGTTTACAGAGGATTTTTATTGGCGTCAATGTTGTCCACTACGAAATGGCAGTCAGCAGTTTTGATAAGCTCAGCTATTTTTAGTGCGGCACACTTATCTGGTGAGAACTTCTTACAGTTGTTCGTCATTGGATGTGTACTTGGATGCTCCTATTGTTGGACTGGAAACTTGAGCTCTCCCATTTTAATACACTCTCTGTACAATGCCATGACCTTAATGATAACATTCTTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

317

Amino Acids

34.86

Weight (kDa)

6.77

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	221 - 308	3e-21	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	42, 681
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	5 cut(s)	211, 372, 454, 852, 914
AfiI	CCNNNNNNNGG	1 cut(s)	870
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	145, 184, 490
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 164, 196
AleI	CACNNNNGTG	1 cut(s)	698
Alw21I	GWGCWC	4 cut(s)	287, 412, 426, 890
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	6 cut(s)	165, 248, 431, 439, 648, 665
ApoI	RAATTY	1 cut(s)	481
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	1 cut(s)	827
BanII	GRGCYC	3 cut(s)	412, 426, 890
Bbv12I	GWGCWC	4 cut(s)	287, 412, 426, 890
BbvI	GCAGC	6 cut(s)	177, 260, 426, 443, 652, 660
BccI	CCATC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	230
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	2 cut(s)	48, 446
BisI	GCNGC	7 cut(s)	166, 249, 432, 440, 649, 666, 801
BlpI	GCTNAGC	1 cut(s)	784
BlsI	GCNGC	7 cut(s)	167, 250, 433, 441, 650, 667, 802
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	4 cut(s)	37, 244, 539, 848
Bpu1102I	GCTNAGC	1 cut(s)	784
BpuEI	CTTGAG	1 cut(s)	904
BsaHI	GRCGYC	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	228, 229, 260, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	870
Bse1I	ACTGG	2 cut(s)	249, 880
Bse3DI	GCAATG	2 cut(s)	398, 426
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	4 cut(s)	228, 229, 260, 606
BseGI	GGATG	5 cut(s)	28, 315, 338, 851, 863
BseLI	CCNNNNNNNGG	1 cut(s)	870
BseMI	GCAATG	2 cut(s)	398, 426
BseMII	CTCAG	2 cut(s)	314, 798
BseNI	ACTGG	2 cut(s)	249, 880
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	6 cut(s)	177, 260, 426, 443, 652, 660
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	4 cut(s)	287, 412, 426, 890
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	870
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	603
Bsp1286I	GDGCHC	4 cut(s)	287, 412, 426, 890
Bsp1407I	TGTACA	1 cut(s)	912
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	784
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	315, 797
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	398, 426
BsrGI	TGTACA	1 cut(s)	912
BsrI	ACTGG	2 cut(s)	249, 880
BssECI	CCNNGG	4 cut(s)	228, 229, 260, 606
BssMI	GATC	1 cut(s)	376
BssNAI	GTATAC	2 cut(s)	43, 682
BssNI	GRCGYC	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	260, 606
Bst1107I	GTATAC	2 cut(s)	43, 682
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	5 cut(s)	24, 40, 277, 715, 831
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	912
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	323, 784
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	5 cut(s)	28, 315, 338, 851, 863
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 162, 248, 254, 445
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	48, 446
BstV1I	GCAGC	6 cut(s)	177, 260, 426, 443, 652, 660
BstZ17I	GTATAC	2 cut(s)	43, 682
BsuRI	GGCC	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	5 cut(s)	28, 315, 338, 851, 863
BtsIMutI	CAGTG	2 cut(s)	20, 242
Cac8I	GCNNGC	1 cut(s)	521
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	5 cut(s)	210, 371, 453, 851, 913
CviAII	CATG	6 cut(s)	83, 215, 261, 362, 559, 922
CviQI	GTAC	5 cut(s)	210, 371, 453, 851, 913
DdeI	CTNAG	2 cut(s)	323, 784
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Ecl136II	GAGCTC	3 cut(s)	410, 424, 888
Eco130I	CCWWGG	2 cut(s)	260, 606
Eco24I	GRGCYC	3 cut(s)	412, 426, 890
Eco53kI	GAGCTC	3 cut(s)	410, 424, 888
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	3 cut(s)	410, 424, 888
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	260, 606
EcoT38I	GRGCYC	3 cut(s)	412, 426, 890
ErhI	CCWWGG	2 cut(s)	260, 606
FaeI	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	6 cut(s)	82, 214, 260, 361, 558, 921
FblI	GTMKAC	2 cut(s)	42, 681
Fnu4HI	GCNGC	7 cut(s)	166, 249, 432, 440, 649, 666, 801
FokI	GGATG	5 cut(s)	15, 302, 345, 858, 870
FriOI	GRGCYC	3 cut(s)	412, 426, 890
Fsp4HI	GCNGC	7 cut(s)	166, 249, 432, 440, 649, 666, 801
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	7 cut(s)	166, 249, 432, 440, 649, 666, 801
HaeIII	GGCC	1 cut(s)	603
HgaI	GACGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
HinfI	GANTC	1 cut(s)	594
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	5 cut(s)	43, 682, 718, 750, 851
Hpy188I	TCNGA	2 cut(s)	324, 630
Hpy188III	TCNNGA	2 cut(s)	419, 948
Hpy8I	GTNNAC	5 cut(s)	43, 682, 718, 750, 851
HpyAV	CCTTC	2 cut(s)	589, 625
HpyCH4III	ACNGT	5 cut(s)	24, 40, 277, 715, 831
HpyCH4V	TGCA	7 cut(s)	35, 135, 165, 313, 361, 431, 448
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 162, 248, 254, 445
HpyF3I	CTNAG	2 cut(s)	323, 784
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	6 cut(s)	173, 262, 282, 407, 516, 866
Lsp1109I	GCAGC	6 cut(s)	177, 260, 426, 443, 652, 660
LweI	GCATC	4 cut(s)	37, 244, 539, 848
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	216, 478, 719
MhlI	GDGCHC	4 cut(s)	287, 412, 426, 890
MluCI	AATT	1 cut(s)	481
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	851
MnlI	CCTC	8 cut(s)	71, 115, 232, 330, 382, 507, 686, 716
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	899, 929
MslI	CAYNNNNRTG	1 cut(s)	698
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	5 cut(s)	25, 162, 248, 254, 445
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
NlaIV	GGNNCC	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	698
PasI	CCCWGGG	1 cut(s)	229
PciI	ACATGT	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	167, 250, 433, 441, 650, 667, 802
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PscI	ACATGT	1 cut(s)	82
Psp124BI	GAGCTC	3 cut(s)	412, 426, 890
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	5 cut(s)	211, 372, 454, 852, 914
RsaNI	GTAC	5 cut(s)	210, 371, 453, 851, 913
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	3 cut(s)	412, 426, 890
SaqAI	TTAA	2 cut(s)	899, 929
SatI	GCNGC	7 cut(s)	166, 249, 432, 440, 649, 666, 801
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	4 cut(s)	287, 412, 426, 890
SfaNI	GCATC	4 cut(s)	37, 244, 539, 848
SfcI	CTRYAG	2 cut(s)	48, 446
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	1 cut(s)	419
SstI	GAGCTC	3 cut(s)	412, 426, 890
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	260, 606
TaaI	ACNGT	5 cut(s)	24, 40, 277, 715, 831
TasI	AATT	1 cut(s)	481
TatI	WGTACW	3 cut(s)	452, 850, 912
TauI	GCSGC	1 cut(s)	803
Tru1I	TTAA	2 cut(s)	899, 929
Tru9I	TTAA	2 cut(s)	899, 929
TscAI	CASTG	2 cut(s)	20, 249
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	6 cut(s)	165, 248, 431, 439, 648, 665
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	231, 378, 547
TspRI	CASTG	2 cut(s)	20, 249
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	2 cut(s)	42, 681
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.