Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Forward (+)

19994327 .. 19999969

Gene Structure 5643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATAGAGTTACAGTGCCGTCTGAAACTGGGTTATCCAATCCCACCGAAAAATTCATCCGTTGGGGATTTTACGTCAAAACTCAAACCCCCATCTCCATCTCCTAGTGCTTTACTCCTCTGTACGAACTTCAACTCCAGCTTAACCTCTAAACGACATTCTTTCAAGTGCTTTTGTAACAAAACCGAAAACACCCAACAAGTCTCTTCCTCTTCTCAGGGCTTCTCAGCACTGGCGGCAGATAGTCCATGGGATAATGCAACTTTGTGGAGCACTCTGGCTTTATATATCTTCAGTTTGCACATTCCTCTTAGTTTTGGAGGTTTGTCTGTGGTTGCTCATGTATTGCATCAGCCTATTCTTGATCCACAGATTGAGGCAATATCATTGCTTGGAGCTCAGATTCTAGAGCTCATTGCAGCAGTGATTCTTCTGCAAAGCACTGCTAAGCCCCAGTATAAGTTTTCAAATTTCTTCAAACCCAGCAAATTGTCAAAAGAGAGGAGCTGGCTGTTGGCATCAGCTGTAGGATTTGGGTTTCTCTTAGTGTTGGTTATCCTTACTTCTTTCCTCGCTGATAGATTCATTGGTCCCAAGGATTTAAACAACTCCATGCTGAAGGAAATCCTGGTAAACAGCAACATCTCAAGAGCTGCATGTGTCTTTGTATACTGCGTTACCACTCCCCTGCTGGAAGAGACTGTTTACCGAGGATTTTTATTGGCATCAATTTCATCCACCATGAAATGGCAGTCAGCTGTTTTTATAAGCTCAACTATATTTAGTGCAGCTCACTTCTCTGGTACTCTTCCAGGATTGTCCATCTTTTTCAGATTTGATTTAGGTGATGTAGCGGTTGCGGCTTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

291

Amino Acids

31.63

Weight (kDa)

8.96

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	219 - 272	1.2e-09	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	767
AccB7I	CCANNNNNTGG	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	3 cut(s)	236, 854, 860
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	52, 469
AcuI	CTGAAG	2 cut(s)	277, 638
AfaI	GTAC	2 cut(s)	124, 805
AfiI	CCNNNNNNNGG	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	133, 166, 468, 478
AjnI	CCWGG	2 cut(s)	627, 811
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	9 cut(s)	141, 398, 412, 507, 524, 653, 758, 771, 791
AluI	AGCT	9 cut(s)	141, 398, 412, 507, 524, 653, 758, 771, 791
Alw21I	GWGCWC	3 cut(s)	275, 400, 414
Alw26I	GTCTC	2 cut(s)	208, 692
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	419, 653, 788
ApoI	RAATTY	2 cut(s)	52, 469
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	590
BanII	GRGCYC	2 cut(s)	400, 414
Bbv12I	GWGCWC	3 cut(s)	275, 400, 414
BbvI	GCAGC	3 cut(s)	431, 640, 800
BccI	CCATC	3 cut(s)	100, 106, 830
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	629, 813
BcoDI	GTCTC	2 cut(s)	208, 692
BfaI	CTAG	2 cut(s)	105, 407
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	5 cut(s)	237, 420, 654, 789, 861
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	5 cut(s)	238, 421, 655, 790, 862
Bme1390I	CCNGG	2 cut(s)	629, 813
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	2 cut(s)	629, 813
BmrI	ACTGGG	2 cut(s)	38, 448
BmsI	GCATC	3 cut(s)	358, 527, 734
BmuI	ACTGGG	2 cut(s)	38, 448
BpmI	CTGGAG	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	248, 594, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	747
Bse1I	ACTGG	3 cut(s)	33, 237, 454
Bse3DI	GCAATG	2 cut(s)	386, 414
BseBI	CCWGG	2 cut(s)	629, 813
BseDI	CCNNGG	3 cut(s)	248, 594, 709
BseGI	GGATG	2 cut(s)	56, 734
BseLI	CCNNNNNNNGG	1 cut(s)	747
BseMI	GCAATG	2 cut(s)	386, 414
BseMII	CTCAG	3 cut(s)	230, 240, 413
BseNI	ACTGG	3 cut(s)	33, 237, 454
BseRI	GAGGAG	2 cut(s)	107, 517
BseXI	GCAGC	3 cut(s)	431, 640, 800
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	807
BsiHKAI	GWGCWC	3 cut(s)	275, 400, 414
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	747
BsmAI	GTCTC	2 cut(s)	208, 692
BsmFI	GGGAC	1 cut(s)	576
Bsp1286I	GDGCHC	3 cut(s)	275, 400, 414
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	3 cut(s)	236, 854, 860
BspCNI	CTCAG	3 cut(s)	229, 239, 412
BspLI	GGNNCC	1 cut(s)	592
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	386, 414
BsrI	ACTGG	3 cut(s)	33, 237, 454
BssECI	CCNNGG	3 cut(s)	248, 594, 709
BssMI	GATC	1 cut(s)	364
BssNAI	GTATAC	1 cut(s)	670
BssT1I	CCWWGG	2 cut(s)	248, 594
Bst1107I	GTATAC	1 cut(s)	670
Bst2UI	CCWGG	2 cut(s)	629, 813
Bst4CI	ACNGT	2 cut(s)	15, 703
Bst6I	CTCTTC	4 cut(s)	211, 217, 690, 813
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	6 cut(s)	216, 226, 311, 399, 447, 544
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	56, 734
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	208, 692
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 860
BstNI	CCWGG	2 cut(s)	629, 813
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	627, 811
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	431, 640, 800
BstZ17I	GTATAC	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	56, 734
BtsI	GCAGTG	2 cut(s)	429, 441
BtsIMutI	CAGTG	4 cut(s)	20, 230, 429, 441
Cac8I	GCNNGC	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	123, 804
CviAII	CATG	5 cut(s)	249, 341, 613, 657, 742
CviQI	GTAC	2 cut(s)	123, 804
DdeI	CTNAG	6 cut(s)	216, 226, 311, 399, 447, 544
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraI	TTTAAA	1 cut(s)	603
Eam1104I	CTCTTC	4 cut(s)	211, 217, 690, 813
EarI	CTCTTC	4 cut(s)	211, 217, 690, 813
Ecl136II	GAGCTC	2 cut(s)	398, 412
Eco130I	CCWWGG	2 cut(s)	248, 594
Eco24I	GRGCYC	2 cut(s)	400, 414
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	2 cut(s)	398, 412
Eco57I	CTGAAG	2 cut(s)	277, 638
EcoICRI	GAGCTC	2 cut(s)	398, 412
EcoRII	CCWGG	2 cut(s)	627, 811
EcoT14I	CCWWGG	2 cut(s)	248, 594
EcoT38I	GRGCYC	2 cut(s)	400, 414
ErhI	CCWWGG	2 cut(s)	248, 594
FaeI	CATG	5 cut(s)	252, 344, 616, 660, 745
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	5 cut(s)	248, 340, 612, 656, 741
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	5 cut(s)	237, 420, 654, 789, 861
FokI	GGATG	2 cut(s)	43, 721
FriOI	GRGCYC	2 cut(s)	400, 414
Fsp4HI	GCNGC	5 cut(s)	237, 420, 654, 789, 861
FspBI	CTAG	2 cut(s)	105, 407
GluI	GCNGC	5 cut(s)	237, 420, 654, 789, 861
GsaI	CCCAGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	121
Hin1II	CATG	5 cut(s)	252, 344, 616, 660, 745
HinfI	GANTC	3 cut(s)	403, 427, 582
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	634, 670, 706
Hpy188I	TCNGA	3 cut(s)	24, 402, 833
Hpy188III	TCNNGA	3 cut(s)	362, 407, 648
Hpy8I	GTNNAC	3 cut(s)	634, 670, 706
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	2 cut(s)	15, 703
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	7 cut(s)	260, 301, 349, 419, 436, 656, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 860
HpyF3I	CTNAG	6 cut(s)	216, 226, 311, 399, 447, 544
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	252, 344, 616, 660, 745
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	270, 395, 504
Lsp1109I	GCAGC	3 cut(s)	431, 640, 800
LweI	GCATC	3 cut(s)	358, 527, 734
MaeI	CTAG	2 cut(s)	105, 407
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	3 cut(s)	9, 176, 676
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	7 cut(s)	198, 204, 283, 422, 466, 707, 800
MhlI	GDGCHC	3 cut(s)	275, 400, 414
MluCI	AATT	4 cut(s)	52, 469, 488, 729
MnlI	CCTC	9 cut(s)	128, 157, 220, 314, 318, 370, 495, 581, 704
MseI	TTAA	2 cut(s)	143, 602
MspA1I	CMGCKG	2 cut(s)	524, 758
MspR9I	CCNGG	2 cut(s)	629, 813
MvaI	CCWGG	2 cut(s)	629, 813
MwoI	GCNNNNNNNGC	2 cut(s)	236, 860
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	5 cut(s)	252, 344, 616, 660, 745
NlaIV	GGNNCC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	403, 427, 582
PflMI	CCANNNNNTGG	1 cut(s)	747
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	5 cut(s)	238, 421, 655, 790, 862
PsiI	TTATAA	1 cut(s)	767
Psp124BI	GAGCTC	2 cut(s)	400, 414
Psp6I	CCWGG	2 cut(s)	627, 811
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	2 cut(s)	627, 811
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	590
PvuII	CAGCTG	2 cut(s)	524, 758
RsaI	GTAC	2 cut(s)	124, 805
RsaNI	GTAC	2 cut(s)	123, 804
SacI	GAGCTC	2 cut(s)	400, 414
SaqAI	TTAA	2 cut(s)	143, 602
SatI	GCNGC	5 cut(s)	237, 420, 654, 789, 861
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	629, 813
SduI	GDGCHC	3 cut(s)	275, 400, 414
SfaNI	GCATC	3 cut(s)	358, 527, 734
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	4 cut(s)	52, 469, 488, 729
SsiI	CCGC	3 cut(s)	236, 854, 860
SspMI	CTAG	2 cut(s)	105, 407
SstI	GAGCTC	2 cut(s)	400, 414
StyD4I	CCNGG	2 cut(s)	627, 811
StyI	CCWWGG	2 cut(s)	248, 594
TaaI	ACNGT	2 cut(s)	15, 703
TaiI	ACGT	1 cut(s)	77
TasI	AATT	4 cut(s)	52, 469, 488, 729
TauI	GCSGC	2 cut(s)	239, 863
TfiI	GAWTC	3 cut(s)	403, 427, 582
Tru1I	TTAA	2 cut(s)	143, 602
Tru9I	TTAA	2 cut(s)	143, 602
TscAI	CASTG	4 cut(s)	20, 237, 429, 448
TseI	GCWGC	3 cut(s)	419, 653, 788
TspDTI	ATGAA	4 cut(s)	45, 574, 723, 758
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	4 cut(s)	20, 237, 429, 448
Van91I	CCANNNNNTGG	1 cut(s)	747
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	2 cut(s)	52, 469
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	2 cut(s)	105, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.