Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Reverse (-)

16934829 .. 16937149

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATAGAATGTCAGTGGCGACTGTGGCATCCTGCAACTGTATACCCTGCAGCACCTGAAAAACTCATTGGATTTGGAGGACATGTTTCCAATCCCCTAACTTCCTCTCTTTCTCCCCATACTTCTCTCTCTTACACCAAGTTCCAATCCACCAGTTTCTTATGCAGCTCCAAACATTGTTTCAAGTGCTTTTGTGACAAAACTGAAAGCACCCATGAACCCTCTTCCCGGGGGTTTTCGGCACTGGCAGCAGATGCTCCATGGGACAATGGAACTGTGTGGAGCACTATGGCTTTCTATATGTTCAGTTTGCACATCCCTCTGAGTTTTGGAGGGTTGTCTGTGGTTGCTCATCTGTTGCATGAACCTGTACTTGATCCACAGACAGAGGCAATATCATTGCTTGGAGCTCAAACTCTAGAGCTCATTGCGGCTCTGCTGCTTCTGCAGAGTACTGCCAAGCCACAATATAAGTTTGTGGATTTCTTCAAAGCTAAAAAACTATCAAAAGAGAGGAGCTGGCTGTTGGCATCTGTCGTAGGATTTGGGTTTCTGTTCATGTTGGTTTTCCTAACTTCCTTACTTGCTGATAGAGTCGTTGGCCCCAAGGATATAAACAACCCTGTTCTGAAGGAAATCTTGTTGAGCAGCAACATCTCACAAGCTGCTTGTGTTCTCGTATACTGCATTATCACTCCCGTGCTGGAAGAAACTGTTTACAGAGGATTTTTATTGGCGTCAATTTTGTCCACTACGAAATGGCAGTCTGCAGTTTTGATAAGCTCGGCTATTTTTAGTGCAGCTCACTTATCTGGTGAGAATTCCTTACAGTTGTTCATCATTGGATGTGTACTTGGATGCTCTTATTGTTGGACTGGAAACTTGAGCTGTCCCATCTTAATACATTCTCTGTACAACGCCATGACCCTAATGATAACATTCTTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

317

Amino Acids

34.66

Weight (kDa)

7.11

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	42, 681
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	4 cut(s)	372, 454, 852, 914
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	184, 490
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 164, 196
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	9 cut(s)	168, 410, 424, 494, 519, 665, 783, 803, 888
AluI	AGCT	9 cut(s)	168, 410, 424, 494, 519, 665, 783, 803, 888
Alw21I	GWGCWC	3 cut(s)	287, 412, 426
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	7 cut(s)	50, 165, 248, 439, 648, 665, 800
ApoI	RAATTY	1 cut(s)	820
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	1 cut(s)	827
AvaI	CYCGRG	1 cut(s)	228
BanII	GRGCYC	2 cut(s)	412, 426
Bbv12I	GWGCWC	3 cut(s)	287, 412, 426
BbvI	GCAGC	7 cut(s)	62, 177, 260, 426, 652, 660, 812
BccI	CCATC	1 cut(s)	902
BcnI	CCSGG	2 cut(s)	229, 230
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	3 cut(s)	48, 446, 768
BisI	GCNGC	8 cut(s)	51, 166, 249, 432, 440, 649, 666, 801
BlsI	GCNGC	8 cut(s)	52, 167, 250, 433, 441, 650, 667, 802
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	229, 230
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	2 cut(s)	229, 230
BmsI	GCATC	4 cut(s)	37, 244, 539, 848
BpuEI	CTTGAG	1 cut(s)	904
BpuMI	CCSGG	2 cut(s)	229, 230
BsaHI	GRCGYC	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	228, 229, 260, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	153, 249, 880
Bse3DI	GCAATG	2 cut(s)	398, 426
BseDI	CCNNGG	4 cut(s)	228, 229, 260, 606
BseGI	GGATG	4 cut(s)	28, 315, 851, 863
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	2 cut(s)	398, 426
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	3 cut(s)	153, 249, 880
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	7 cut(s)	62, 177, 260, 426, 652, 660, 812
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	3 cut(s)	287, 412, 426
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	278, 876
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	278, 876
BsnI	GGCC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	287, 412, 426
Bsp1407I	TGTACA	1 cut(s)	912
Bsp143I	GATC	1 cut(s)	376
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	3 cut(s)	52, 450, 772
BspPI	GGATC	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	398, 426
BsrGI	TGTACA	1 cut(s)	912
BsrI	ACTGG	3 cut(s)	153, 249, 880
BssECI	CCNNGG	4 cut(s)	228, 229, 260, 606
BssMI	GATC	1 cut(s)	376
BssNAI	GTATAC	2 cut(s)	43, 682
BssNI	GRCGYC	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	260, 606
Bst1107I	GTATAC	2 cut(s)	43, 682
Bst4CI	ACNGT	5 cut(s)	24, 40, 277, 715, 831
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	912
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	4 cut(s)	28, 315, 851, 863
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 248, 254, 445
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	227, 228
BstSFI	CTRYAG	3 cut(s)	48, 446, 768
BstV1I	GCAGC	7 cut(s)	62, 177, 260, 426, 652, 660, 812
BstZ17I	GTATAC	2 cut(s)	43, 682
BsuRI	GGCC	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	28, 315, 851, 863
BtsIMutI	CAGTG	2 cut(s)	20, 242
Cac8I	GCNNGC	1 cut(s)	521
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	602
Cfr9I	CCCGGG	1 cut(s)	228
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	4 cut(s)	371, 453, 851, 913
CviAII	CATG	6 cut(s)	83, 215, 261, 362, 559, 922
CviQI	GTAC	4 cut(s)	371, 453, 851, 913
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Ecl136II	GAGCTC	2 cut(s)	410, 424
Eco130I	CCWWGG	2 cut(s)	260, 606
Eco24I	GRGCYC	2 cut(s)	412, 426
Eco53kI	GAGCTC	2 cut(s)	410, 424
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	2 cut(s)	410, 424
EcoRI	GAATTC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	260, 606
EcoT38I	GRGCYC	2 cut(s)	412, 426
ErhI	CCWWGG	2 cut(s)	260, 606
FaeI	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	278, 876
FatI	CATG	6 cut(s)	82, 214, 260, 361, 558, 921
FblI	GTMKAC	2 cut(s)	42, 681
Fnu4HI	GCNGC	8 cut(s)	51, 166, 249, 432, 440, 649, 666, 801
FokI	GGATG	4 cut(s)	15, 302, 858, 870
FriOI	GRGCYC	2 cut(s)	412, 426
Fsp4HI	GCNGC	8 cut(s)	51, 166, 249, 432, 440, 649, 666, 801
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	8 cut(s)	51, 166, 249, 432, 440, 649, 666, 801
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
HinfI	GANTC	1 cut(s)	594
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	5 cut(s)	43, 682, 718, 750, 851
Hpy188I	TCNGA	2 cut(s)	324, 630
Hpy188III	TCNNGA	2 cut(s)	419, 948
Hpy8I	GTNNAC	5 cut(s)	43, 682, 718, 750, 851
HpyAV	CCTTC	1 cut(s)	625
HpyCH4III	ACNGT	5 cut(s)	24, 40, 277, 715, 831
HpyCH4V	TGCA	9 cut(s)	35, 50, 165, 313, 361, 448, 687, 770, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 248, 254, 445
HpyF3I	CTNAG	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	5 cut(s)	173, 262, 282, 407, 516
Lsp1109I	GCAGC	7 cut(s)	62, 177, 260, 426, 652, 660, 812
LweI	GCATC	4 cut(s)	37, 244, 539, 848
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	216, 478, 719
MhlI	GDGCHC	3 cut(s)	287, 412, 426
MluCI	AATT	2 cut(s)	741, 820
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	851
MnlI	CCTC	8 cut(s)	71, 115, 232, 326, 330, 382, 507, 716
MseI	TTAA	1 cut(s)	899
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	229, 230
MwoI	GCNNNNNNNGC	4 cut(s)	25, 248, 254, 445
NciI	CCSGG	2 cut(s)	229, 230
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	6 cut(s)	86, 218, 264, 365, 562, 925
NlaIV	GGNNCC	1 cut(s)	604
NmeAIII	GCCGAG	1 cut(s)	764
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	698
PciI	ACATGT	1 cut(s)	82
PkrI	GCNGC	8 cut(s)	52, 167, 250, 433, 441, 650, 667, 802
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PscI	ACATGT	1 cut(s)	82
Psp124BI	GAGCTC	2 cut(s)	412, 426
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	3 cut(s)	52, 450, 772
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	4 cut(s)	372, 454, 852, 914
RsaNI	GTAC	4 cut(s)	371, 453, 851, 913
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	2 cut(s)	412, 426
SaqAI	TTAA	1 cut(s)	899
SatI	GCNGC	8 cut(s)	51, 166, 249, 432, 440, 649, 666, 801
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	229, 230
SduI	GDGCHC	3 cut(s)	287, 412, 426
SfaNI	GCATC	4 cut(s)	37, 244, 539, 848
SfcI	CTRYAG	3 cut(s)	48, 446, 768
SmaI	CCCGGG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
Sse9I	AATT	2 cut(s)	741, 820
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	419
SstI	GAGCTC	2 cut(s)	412, 426
StyD4I	CCNGG	2 cut(s)	227, 228
StyI	CCWWGG	2 cut(s)	260, 606
TaaI	ACNGT	5 cut(s)	24, 40, 277, 715, 831
TasI	AATT	2 cut(s)	741, 820
TatI	WGTACW	4 cut(s)	370, 452, 850, 912
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	899
Tru9I	TTAA	1 cut(s)	899
TscAI	CASTG	2 cut(s)	20, 249
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	7 cut(s)	50, 165, 248, 439, 648, 665, 800
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	231, 378, 547, 826
TspMI	CCCGGG	1 cut(s)	228
TspRI	CASTG	2 cut(s)	20, 249
XapI	RAATTY	1 cut(s)	820
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	1 cut(s)	86
XmaI	CCCGGG	1 cut(s)	228
XmiI	GTMKAC	2 cut(s)	42, 681
XspI	CTAG	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.