Rh2DG345300

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011002
Physical Location & Seq
Reverse (-)
47347245 .. 47350055
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG345300.1

Sequence Viewer

Length: 951 bp
ATGATGAAGTTACAGTGCCATCTGAAGCTGATGTATCCAACCACACCTACAAAATTATCCATTGGGGATTTTACGTCAAAACTCAAACTCCCGTCTCCGTCTCCGTCTCCATCTCCTAGTGCTCTTCTCCTTTGCTCGAATTTCAAATCCAGCTTAACCTCAAAACCAGATTCTATCAAGTGCTTTTGTAACAAAACTGACAACACGCAACAAGTCTCTCCCTCTTCTCAGGGCTTCTCAGCACTGGCGGCAGATAGTCCATGGGACGTTGCAACTGTGTGGAGCACTCTGGCTTTCTATATCTTCAGTTTGCACATTCCTCTTAGTTTTGGAGGTTTGTCTGTGGTTGCTTATGTACTGAATCAGCCTGTTCTTGACCCACAGATTGAGGCAATATCGTTGCTTGGAGCTCAGTTTCTAGAGCTCATTGCAGCAATGCTTCTTCTGCAGAGTACTGCTAAGCCACAGTATAAGTTTGCGAACTTCTTCAAAGCTAACAAATTGTCAAAAGAGAGGAGCTGGCTGTTGGTATCAGCTGTAGGATTTGGGTTTCTCTTTGTGTTGGTTTTCCTTACGTCTTTTCTTGCTGATAGATTCATTGGTCCAAAGGATATAAACAACCCTGTACTGAAGGAAATCCTGCTAAGCAGCGACATCTCAAAAGCTGCATGTTTCTTTGTATACTGCGTTATTACTCCCCTGCTGGAAGAGACTGTTTACCGAGGTTTTTTGTTGACATCAATGTCATCCACCATGAAATGGCAGTCAGCTGTTTTGATAAGCTCAGCTATATTTAGTGCAGCTCACTTCTCTGGTGAGAATTTCCTACAGTTGTTTATTATTGGATGTGTCCTTGGATGCTCTTATTGTTGGACTGGAAACTTGGGTTCCTCCATTTTAATACATTCCCTGTACAACGCCCTGACCCTAATGATAACATTCTTATCCTAA

Protein Analysis

316

Amino Acids

34.62

Weight (kDa)

8.67

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 222 - 308 3.6e-21 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 742
AccB7I CCANNNNNTGG 1 cut(s) 759
AccI GTMKAC 1 cut(s) 681
AciI CCGC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 139, 820
AcuI CTGAAG 3 cut(s) 44, 289, 650
AfaI GTAC 4 cut(s) 357, 454, 627, 914
AfiI CCNNNNNNNGG 1 cut(s) 759
AgsI TTSAA 2 cut(s) 145, 490
Alw21I GWGCWC 4 cut(s) 124, 287, 412, 426
Alw26I GTCTC 5 cut(s) 99, 105, 111, 220, 704
ApeKI GCWGC 4 cut(s) 431, 648, 665, 800
ApoI RAATTY 2 cut(s) 139, 820
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 1 cut(s) 827
AvaII GGWCC 1 cut(s) 602
BanII GRGCYC 2 cut(s) 412, 426
Bbv12I GWGCWC 4 cut(s) 124, 287, 412, 426
BbvI GCAGC 4 cut(s) 443, 652, 660, 812
BccI CCATC 2 cut(s) 27, 118
BciVI GTATCC 1 cut(s) 45
BcoDI GTCTC 5 cut(s) 99, 105, 111, 220, 704
BfaI CTAG 2 cut(s) 117, 419
BfmI CTRYAG 3 cut(s) 446, 537, 827
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 5 cut(s) 249, 432, 649, 666, 801
BlpI GCTNAGC 3 cut(s) 459, 644, 784
BlsI GCNGC 5 cut(s) 250, 433, 650, 667, 802
BmcAI AGTACT 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 889
BmsI GCATC 1 cut(s) 848
Bpu1102I GCTNAGC 3 cut(s) 459, 644, 784
BsaJI CCNNGG 3 cut(s) 260, 721, 853
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 759
Bse1I ACTGG 2 cut(s) 249, 880
Bse3DI GCAATG 2 cut(s) 426, 441
BseDI CCNNGG 3 cut(s) 260, 721, 853
BseGI GGATG 3 cut(s) 746, 851, 863
BseLI CCNNNNNNNGG 1 cut(s) 759
BseMI GCAATG 2 cut(s) 426, 441
BseMII CTCAG 4 cut(s) 242, 252, 425, 798
BseNI ACTGG 2 cut(s) 249, 880
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 4 cut(s) 443, 652, 660, 812
BsgI GTGCAG 1 cut(s) 819
BsiHKAI GWGCWC 4 cut(s) 124, 287, 412, 426
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 759
BsmAI GTCTC 5 cut(s) 99, 105, 111, 220, 704
BsmBI CGTCTC 3 cut(s) 99, 105, 111
BsmFI GGGAC 1 cut(s) 278
Bsp1286I GDGCHC 4 cut(s) 124, 287, 412, 426
Bsp1407I TGTACA 1 cut(s) 912
Bsp1720I GCTNAGC 3 cut(s) 459, 644, 784
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 248
BspCNI CTCAG 4 cut(s) 241, 251, 424, 797
BspLI GGNNCC 1 cut(s) 889
BspMAI CTGCAG 1 cut(s) 450
BspQI GCTCTTC 1 cut(s) 129
BsrDI GCAATG 2 cut(s) 426, 441
BsrGI TGTACA 1 cut(s) 912
BsrI ACTGG 2 cut(s) 249, 880
BssECI CCNNGG 3 cut(s) 260, 721, 853
BssNAI GTATAC 1 cut(s) 682
BssT1I CCWWGG 2 cut(s) 260, 853
Bst1107I GTATAC 1 cut(s) 682
Bst4CI ACNGT 5 cut(s) 15, 277, 468, 715, 831
Bst6I CTCTTC 3 cut(s) 129, 229, 702
BstAUI TGTACA 1 cut(s) 912
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 7 cut(s) 228, 238, 323, 411, 459, 644, 784
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 3 cut(s) 746, 851, 863
BstMAI GTCTC 5 cut(s) 99, 105, 111, 220, 704
BstMWI GCNNNNNNNGC 2 cut(s) 248, 445
BstNSI RCATGY 1 cut(s) 672
BstSFI CTRYAG 3 cut(s) 446, 537, 827
BstV1I GCAGC 4 cut(s) 443, 652, 660, 812
BstZ17I GTATAC 1 cut(s) 682
BsuI GTATCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 260
BtsCI GGATG 3 cut(s) 746, 851, 863
BtsIMutI CAGTG 2 cut(s) 20, 242
Cac8I GCNNGC 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 602
Csp6I GTAC 4 cut(s) 356, 453, 626, 913
CviAII CATG 3 cut(s) 261, 669, 754
CviQI GTAC 4 cut(s) 356, 453, 626, 913
DdeI CTNAG 7 cut(s) 228, 238, 323, 411, 459, 644, 784
DrdI GACNNNNNNGTC 1 cut(s) 742
DseDI GACNNNNNNGTC 1 cut(s) 742
Eam1104I CTCTTC 3 cut(s) 129, 229, 702
EarI CTCTTC 3 cut(s) 129, 229, 702
Ecl136II GAGCTC 2 cut(s) 410, 424
Eco130I CCWWGG 2 cut(s) 260, 853
Eco24I GRGCYC 2 cut(s) 412, 426
Eco47I GGWCC 1 cut(s) 602
Eco53kI GAGCTC 2 cut(s) 410, 424
Eco57I CTGAAG 3 cut(s) 44, 289, 650
EcoICRI GAGCTC 2 cut(s) 410, 424
EcoT14I CCWWGG 2 cut(s) 260, 853
EcoT38I GRGCYC 2 cut(s) 412, 426
ErhI CCWWGG 2 cut(s) 260, 853
Esp3I CGTCTC 3 cut(s) 99, 105, 111
FaeI CATG 3 cut(s) 264, 672, 757
FaiI YATR 9 cut(s) 262, 300, 354, 471, 614, 670, 682, 755, 791
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 260, 668, 753
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 5 cut(s) 249, 432, 649, 666, 801
FokI GGATG 3 cut(s) 733, 858, 870
FriOI GRGCYC 2 cut(s) 412, 426
Fsp4HI GCNGC 5 cut(s) 249, 432, 649, 666, 801
FspBI CTAG 2 cut(s) 117, 419
GluI GCNGC 5 cut(s) 249, 432, 649, 666, 801
Hin1II CATG 3 cut(s) 264, 672, 757
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 3 cut(s) 170, 361, 594
HphI GGTGA 1 cut(s) 827
Hpy166II GTNNAC 3 cut(s) 682, 718, 735
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 374, 419
Hpy8I GTNNAC 3 cut(s) 682, 718, 735
HpyAV CCTTC 1 cut(s) 625
HpyCH4III ACNGT 5 cut(s) 15, 277, 468, 715, 831
HpyCH4IV ACGT 3 cut(s) 74, 267, 575
HpyCH4V TGCA 6 cut(s) 272, 313, 431, 448, 668, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 445
HpyF3I CTNAG 7 cut(s) 228, 238, 323, 411, 459, 644, 784
HpySE526I ACGT 3 cut(s) 74, 267, 575
Hsp92II CATG 3 cut(s) 264, 672, 757
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 3 cut(s) 282, 407, 516
Lsp1109I GCAGC 4 cut(s) 443, 652, 660, 812
LweI GCATC 1 cut(s) 848
MaeI CTAG 2 cut(s) 117, 419
MaeII ACGT 3 cut(s) 74, 267, 575
MaeIII GTNAC 2 cut(s) 9, 188
MboII GAAGA 6 cut(s) 116, 216, 295, 434, 478, 719
MhlI GDGCHC 4 cut(s) 124, 287, 412, 426
MluCI AATT 4 cut(s) 53, 139, 500, 820
MmeI TCCRAC 2 cut(s) 62, 851
MnlI CCTC 8 cut(s) 169, 232, 326, 330, 382, 507, 716, 901
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 2 cut(s) 155, 899
MspA1I CMGCKG 2 cut(s) 536, 770
MwoI GCNNNNNNNGC 2 cut(s) 248, 445
NcoI CCATGG 1 cut(s) 260
NlaIII CATG 3 cut(s) 264, 672, 757
NlaIV GGNNCC 1 cut(s) 889
NspI RCATGY 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 170, 361, 594
PflMI CCANNNNNTGG 1 cut(s) 759
PkrI GCNGC 5 cut(s) 250, 433, 650, 667, 802
Psp124BI GAGCTC 2 cut(s) 412, 426
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 1 cut(s) 602
PstI CTGCAG 1 cut(s) 450
PvuII CAGCTG 2 cut(s) 536, 770
RsaI GTAC 4 cut(s) 357, 454, 627, 914
RsaNI GTAC 4 cut(s) 356, 453, 626, 913
SacI GAGCTC 2 cut(s) 412, 426
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 155, 899
SatI GCNGC 5 cut(s) 249, 432, 649, 666, 801
Sau96I GGNCC 1 cut(s) 602
ScaI AGTACT 1 cut(s) 454
SduI GDGCHC 4 cut(s) 124, 287, 412, 426
SfaNI GCATC 1 cut(s) 848
SfcI CTRYAG 3 cut(s) 446, 537, 827
SinI GGWCC 1 cut(s) 602
Sse9I AATT 4 cut(s) 53, 139, 500, 820
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 117, 419
SstI GAGCTC 2 cut(s) 412, 426
StyI CCWWGG 2 cut(s) 260, 853
TaaI ACNGT 5 cut(s) 15, 277, 468, 715, 831
TaiI ACGT 3 cut(s) 77, 270, 578
TaqI TCGA 1 cut(s) 137
TasI AATT 4 cut(s) 53, 139, 500, 820
TatI WGTACW 4 cut(s) 355, 452, 625, 912
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 170, 361, 594
Tru1I TTAA 2 cut(s) 155, 899
Tru9I TTAA 2 cut(s) 155, 899
TscAI CASTG 2 cut(s) 20, 249
TseI GCWGC 4 cut(s) 431, 648, 665, 800
TspDTI ATGAA 3 cut(s) 20, 586, 770
TspGWI ACGGA 2 cut(s) 87, 93
TspRI CASTG 2 cut(s) 20, 249
Van91I CCANNNNNTGG 1 cut(s) 759
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 139, 820
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 672
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 2 cut(s) 117, 419
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.