Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Forward (+)

14295589 .. 14300319

Gene Structure 4731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G135600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATACGGTTACAGTGGCAACTGTGGCATCCTCTACACCTTGCACCAAAAAAACCCATTGGAAATTTTAGCAGACCACTAATTTCCTTTCTGTCTCCTCATACTCTTCTCAGTTGCACCAATTCCAAATCCAGCTTAAGCTCCAAAGTTTCTTTCAAGTGCTTTTGTCACAAAACTGAAAACACCCATGAAGCCTCTTCTCAGGGATTCTCGGTTTTGGCAGCAGATGCTCCATGGGACCACGGAAGTTTATGGAGCACTATGGCTTTCTATATGTTCAGTTTGCACATTCCTCTGAGTTTTGGAGGGTTGTCTGTGGTTGCTCATGTATTGCATGAACCTATTCTTGATCCACAGATAGAGGCAATATCATTGCTTGGAGCTCAAATTTTAGAGCTCATTGCAGCTCTAGTTCTTCTGCAGAGCACTGCTAAGCCACAATATAAGTTTGTGGATTTCTTTAAAGCTAACGAAGTATCAAAAGAGAGGAGCTGGCTGTTGGCATCAGCTGTAGGATTTGGGTTTCTATTCATGTTGGTTTTCCTTACTTCCTTCCTTGCTGATAGTGTTGTTGGGCCCAAGGCTATAAACAACCCTGTACTCAAAGAAATCCTAGTAAGCAGCAACATCTCAAAAGCTGCTTGTGTCCTTGTATATTGCATTGTCACTCCTGTGCTGGAAGAAACTGTTTACAGGGGATTTTTATTGGCGTCGATTTTGTCCACTATGAAATGGCAGTCAGCAGTTTTGATAAGCTCAGCTATTTTTAGTGCAGCTCACTTGTCTGGTGAGAATTCCTTACAGTTGTTCATCATTGGATGTGTGCTTGGATGCTCTTACTGTTGGACTGGAAACTTGAGATCTCCCATTTTAATACATTCCCTGTACAACGCCATGACTCTAATGATAACATTCTTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

308

Amino Acids

33.76

Weight (kDa)

8.4

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	3 cut(s)	64, 387, 793
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	2 cut(s)	600, 887
AflII	CTTAAG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AleI	CACNNNNGTG	1 cut(s)	671
Alw21I	GWGCWC	4 cut(s)	260, 385, 399, 428
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	575
ApaI	GGGCCC	1 cut(s)	579
ApeKI	GCWGC	5 cut(s)	221, 404, 621, 638, 773
ApoI	RAATTY	3 cut(s)	64, 387, 793
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	3 cut(s)	238, 575, 576
AsuHPI	GGTGA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	579
BanII	GRGCYC	3 cut(s)	385, 399, 579
Bbv12I	GWGCWC	4 cut(s)	260, 385, 399, 428
BbvI	GCAGC	5 cut(s)	233, 416, 625, 633, 785
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	410, 614
BfmI	CTRYAG	2 cut(s)	419, 510
BfrI	CTTAAG	1 cut(s)	136
BglII	AGATCT	1 cut(s)	860
BisI	GCNGC	5 cut(s)	222, 405, 622, 639, 774
BlpI	GCTNAGC	2 cut(s)	432, 757
BlsI	GCNGC	5 cut(s)	223, 406, 623, 640, 775
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	238, 575, 576
BmiI	GGNNCC	2 cut(s)	239, 577
BmsI	GCATC	4 cut(s)	37, 217, 512, 821
Bpu1102I	GCTNAGC	2 cut(s)	432, 757
BpuEI	CTTGAG	1 cut(s)	877
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	3 cut(s)	233, 241, 579
Bse1I	ACTGG	1 cut(s)	853
Bse3DI	GCAATG	2 cut(s)	371, 399
BseDI	CCNNGG	3 cut(s)	233, 241, 579
BseGI	GGATG	3 cut(s)	28, 824, 836
BseMI	GCAATG	2 cut(s)	371, 399
BseMII	CTCAG	4 cut(s)	124, 215, 287, 771
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	2 cut(s)	87, 502
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	5 cut(s)	233, 416, 625, 633, 785
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	1 cut(s)	577
BsiHKAI	GWGCWC	4 cut(s)	260, 385, 399, 428
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	577
Bsp120I	GGGCCC	1 cut(s)	575
Bsp1286I	GDGCHC	5 cut(s)	260, 385, 399, 428, 579
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	2 cut(s)	349, 860
Bsp1720I	GCTNAGC	2 cut(s)	432, 757
Bsp19I	CCATGG	1 cut(s)	233
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	4 cut(s)	123, 214, 288, 770
BspLI	GGNNCC	2 cut(s)	239, 577
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	371, 399
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	233, 241, 579
BssMI	GATC	2 cut(s)	349, 860
BssNI	GRCGYC	1 cut(s)	710
BssT1I	CCWWGG	2 cut(s)	233, 579
Bst4CI	ACNGT	6 cut(s)	9, 15, 24, 688, 804, 842
Bst6I	CTCTTC	2 cut(s)	111, 202
BstACI	GRCGYC	1 cut(s)	710
BstAFI	CTTAAG	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	885
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	5 cut(s)	110, 201, 296, 432, 757
BstDSI	CCRYGG	2 cut(s)	233, 241
BstF5I	GGATG	3 cut(s)	28, 824, 836
BstKTI	GATC	2 cut(s)	352, 863
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	349, 860
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 227
BstSFI	CTRYAG	2 cut(s)	419, 510
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	233, 416, 625, 633, 785
BstX2I	RGATCY	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	860
BsuRI	GGCC	1 cut(s)	577
BtgI	CCRYGG	2 cut(s)	233, 241
BtsCI	GGATG	3 cut(s)	28, 824, 836
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	20, 426
Cac8I	GCNNGC	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	238, 575, 576
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	599, 886
CviAII	CATG	6 cut(s)	188, 234, 326, 335, 532, 895
CviQI	GTAC	2 cut(s)	599, 886
DdeI	CTNAG	5 cut(s)	110, 201, 296, 432, 757
DpnI	GATC	2 cut(s)	351, 862
DpnII	GATC	2 cut(s)	349, 860
DraI	TTTAAA	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	111, 202
EarI	CTCTTC	2 cut(s)	111, 202
Ecl136II	GAGCTC	2 cut(s)	383, 397
Eco130I	CCWWGG	2 cut(s)	233, 579
Eco24I	GRGCYC	3 cut(s)	385, 399, 579
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	2 cut(s)	383, 397
EcoICRI	GAGCTC	2 cut(s)	383, 397
EcoRI	GAATTC	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	233, 579
EcoT38I	GRGCYC	3 cut(s)	385, 399, 579
ErhI	CCWWGG	2 cut(s)	233, 579
FaeI	CATG	6 cut(s)	191, 237, 329, 338, 535, 898
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	6 cut(s)	187, 233, 325, 334, 531, 894
Fnu4HI	GCNGC	5 cut(s)	222, 405, 622, 639, 774
FokI	GGATG	3 cut(s)	15, 831, 843
FriOI	GRGCYC	3 cut(s)	385, 399, 579
Fsp4HI	GCNGC	5 cut(s)	222, 405, 622, 639, 774
FspBI	CTAG	2 cut(s)	410, 614
GluI	GCNGC	5 cut(s)	222, 405, 622, 639, 774
HaeIII	GGCC	1 cut(s)	577
HgaI	GACGC	1 cut(s)	699
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	6 cut(s)	191, 237, 329, 338, 535, 898
HinfI	GANTC	2 cut(s)	207, 898
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	2 cut(s)	691, 723
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	347, 921
Hpy8I	GTNNAC	2 cut(s)	691, 723
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	6 cut(s)	9, 15, 24, 688, 804, 842
HpyCH4V	TGCA	8 cut(s)	44, 117, 286, 334, 404, 421, 660, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 227
HpyF3I	CTNAG	5 cut(s)	110, 201, 296, 432, 757
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	6 cut(s)	191, 237, 329, 338, 535, 898
Kzo9I	GATC	2 cut(s)	349, 860
LmnI	GCTCC	5 cut(s)	146, 235, 255, 380, 489
Lsp1109I	GCAGC	5 cut(s)	233, 416, 625, 633, 785
LweI	GCATC	4 cut(s)	37, 217, 512, 821
MaeI	CTAG	2 cut(s)	410, 614
MaeIII	GTNAC	3 cut(s)	9, 167, 664
MalI	GATC	2 cut(s)	351, 862
MboI	GATC	2 cut(s)	349, 860
MboII	GAAGA	4 cut(s)	98, 189, 407, 692
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	5 cut(s)	260, 385, 399, 428, 579
MluCI	AATT	5 cut(s)	64, 81, 121, 387, 793
MlyI	GAGTC	1 cut(s)	892
MmeI	TCCRAC	1 cut(s)	824
MnlI	CCTC	7 cut(s)	42, 108, 205, 299, 303, 355, 480
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	3 cut(s)	137, 462, 872
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	25, 227
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	349, 860
NlaIII	CATG	6 cut(s)	191, 237, 329, 338, 535, 898
NlaIV	GGNNCC	2 cut(s)	239, 577
NmuCI	GTSAC	2 cut(s)	167, 664
OliI	CACNNNNGTG	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	5 cut(s)	223, 406, 623, 640, 775
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Psp124BI	GAGCTC	2 cut(s)	385, 399
PspN4I	GGNNCC	2 cut(s)	239, 577
PspOMI	GGGCCC	1 cut(s)	575
PspPI	GGNCC	3 cut(s)	238, 575, 576
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	600, 887
RsaNI	GTAC	2 cut(s)	599, 886
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	2 cut(s)	385, 399
SaqAI	TTAA	3 cut(s)	137, 462, 872
SatI	GCNGC	5 cut(s)	222, 405, 622, 639, 774
Sau3AI	GATC	2 cut(s)	349, 860
Sau96I	GGNCC	3 cut(s)	238, 575, 576
SchI	GAGTC	1 cut(s)	892
SduI	GDGCHC	5 cut(s)	260, 385, 399, 428, 579
SfaNI	GCATC	4 cut(s)	37, 217, 512, 821
SfcI	CTRYAG	2 cut(s)	419, 510
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	136, 856
SmoI	CTYRAG	2 cut(s)	136, 856
Sse9I	AATT	5 cut(s)	64, 81, 121, 387, 793
SspMI	CTAG	2 cut(s)	410, 614
SstI	GAGCTC	2 cut(s)	385, 399
StyI	CCWWGG	2 cut(s)	233, 579
TaaI	ACNGT	6 cut(s)	9, 15, 24, 688, 804, 842
TaqI	TCGA	1 cut(s)	713
TasI	AATT	5 cut(s)	64, 81, 121, 387, 793
TatI	WGTACW	2 cut(s)	598, 885
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	3 cut(s)	137, 462, 872
Tru9I	TTAA	3 cut(s)	137, 462, 872
TscAI	CASTG	2 cut(s)	20, 433
TseFI	GTSAC	2 cut(s)	167, 664
TseI	GCWGC	5 cut(s)	221, 404, 621, 638, 773
Tsp45I	GTSAC	2 cut(s)	167, 664
TspDTI	ATGAA	5 cut(s)	204, 351, 520, 743, 799
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	20, 433
Vha464I	CTTAAG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	3 cut(s)	64, 387, 793
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	2 cut(s)	410, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.