Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011002

Physical Location & Seq

Genomic Coordinates Forward (+)

45212676 .. 45217306

Gene Structure 4631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATAAAGTTACAGTGCCATCTGAAGCTGATGTATCCAACCACACCTACAAAATTATCCATTGGGGATTTTACGTCAAAACTCAAACTCCCGTCACCCTCTCCGCCTCCATCTCCTAGTGCTCTTCTCTTTTGCACGAATTTCAAATCCAGCTTAACCTCAAAACCAGATTCTATCAAGTGCTTTTGTAACAAAACTGACAACACCCAACAAGTCTCTCCCTCTTCTCAGGGCTTCTCAGCACTGGCGGCAGATAGTCCATGGGACATTGCAACTGTGTGGAGCACTCTGGCTTTCTATATCTTCAGTTTGCACATTCCACTTAGTTTTGGAGGTTTGTCTGTGGTTGCTTATGTACTGAATCAGCCTGTTCTTGATCCACAGATTGAGGCAATATCGTTGCTTGGAGCTCAGTTTCTAGAGTTCATTGCAGCAATGCTTCTTCTGCAGAGTACTGCTAAGCCACAGTATAAGTTTGCGAACTTCTTCAAAGCTAACAAATTGTCAAAAGAGAGGAGCTGGCTGTTTGCATCAGCTGTAGGATTTGGGTTTCTCTTTGTGTTGGTTTTCCTTACGTCATTTCTTGCTGATAGATTCATTGGTCCAAAGGATATAAACAACCCTGTACTGAAGGAAATCCTGCTAAGCAGCGACATCTCAAAAGCTGCATGTTTCTTTGTATACTGCGTTATTACTCCCCTGCTGGAAGAGACTGTTTACCGAGGTTTTTTATTGACATCAGTGTCATCCACCATGAAATGGCAGTCAGCTGTTTTGCTAAGCTCAGCTATATTTAGTGCAGCTCACTTCTCTGGTGAGAACTTCCTACAGTTGTTTATTATTGGATGTGTCCTTGGATGCTCTTATTGTTGGACTGGAAACTTGGGTTCCTCCATTTTAATACATTCCCTGTACAACGCCCTGACCCTAATGATAACATTCTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

316

Amino Acids

34.75

Weight (kDa)

8.67

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	222 - 308	9e-21	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20725
fragaria_vesca	FvH4_6g26140
malus_domestica	MD09G1249200.v1.1
prunus_persica	Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135600_v2.0.a1 Prupe.3G135800_v2.0.a1 Prupe.4G275100_v2.0.a1
pyrus_communis	pycom09g16620
rosa_chinensis	RchiOBHm_Chr2g0126191
rosa_laevigata	RLG00000018891
rosa_multiflora	Rmu_sc0005203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117390
rosa_rugosa	Rorug02G0261600
rosa_samantha	Rh2AG318600 Rh2BG327200 Rh2DG345300 Rh2DG346500
rosa_wichuraiana	Rw2G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	742
AccB7I	CCANNNNNTGG	1 cut(s)	759
AccI	GTMKAC	1 cut(s)	681
AciI	CCGC	2 cut(s)	104, 248
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	3 cut(s)	44, 289, 650
AfaI	GTAC	4 cut(s)	357, 454, 627, 914
AfiI	CCNNNNNNNGG	1 cut(s)	759
AgsI	TTSAA	2 cut(s)	145, 490
Alw21I	GWGCWC	3 cut(s)	124, 287, 412
Alw26I	GTCTC	2 cut(s)	220, 704
AlwI	GGATC	1 cut(s)	371
ApeKI	GCWGC	4 cut(s)	431, 648, 665, 800
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	87, 827
AvaII	GGWCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	3 cut(s)	124, 287, 412
BbvI	GCAGC	4 cut(s)	443, 652, 660, 812
BccI	CCATC	2 cut(s)	27, 118
BciVI	GTATCC	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	220, 704
BfaI	CTAG	2 cut(s)	117, 419
BfmI	CTRYAG	3 cut(s)	446, 537, 827
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	5 cut(s)	249, 432, 649, 666, 801
BlpI	GCTNAGC	4 cut(s)	459, 644, 779, 784
BlsI	GCNGC	5 cut(s)	250, 433, 650, 667, 802
BmcAI	AGTACT	1 cut(s)	454
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	889
BmsI	GCATC	2 cut(s)	539, 848
Bpu1102I	GCTNAGC	4 cut(s)	459, 644, 779, 784
BsaJI	CCNNGG	3 cut(s)	260, 721, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse1I	ACTGG	2 cut(s)	249, 880
Bse3DI	GCAATG	3 cut(s)	267, 426, 441
BseDI	CCNNGG	3 cut(s)	260, 721, 853
BseGI	GGATG	3 cut(s)	746, 851, 863
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMI	GCAATG	3 cut(s)	267, 426, 441
BseMII	CTCAG	4 cut(s)	242, 252, 425, 798
BseNI	ACTGG	2 cut(s)	249, 880
BseRI	GAGGAG	1 cut(s)	529
BseXI	GCAGC	4 cut(s)	443, 652, 660, 812
BsgI	GTGCAG	1 cut(s)	819
BsiHKAI	GWGCWC	3 cut(s)	124, 287, 412
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	2 cut(s)	220, 704
BsmFI	GGGAC	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	124, 287, 412
Bsp1407I	TGTACA	1 cut(s)	912
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	4 cut(s)	459, 644, 779, 784
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	2 cut(s)	104, 248
BspCNI	CTCAG	4 cut(s)	241, 251, 424, 797
BspLI	GGNNCC	1 cut(s)	889
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	371
BspQI	GCTCTTC	1 cut(s)	129
BsrDI	GCAATG	3 cut(s)	267, 426, 441
BsrGI	TGTACA	1 cut(s)	912
BsrI	ACTGG	2 cut(s)	249, 880
BssECI	CCNNGG	3 cut(s)	260, 721, 853
BssMI	GATC	1 cut(s)	376
BssNAI	GTATAC	1 cut(s)	682
BssT1I	CCWWGG	2 cut(s)	260, 853
Bst1107I	GTATAC	1 cut(s)	682
Bst4CI	ACNGT	5 cut(s)	15, 277, 468, 715, 831
Bst6I	CTCTTC	3 cut(s)	129, 229, 702
BstAUI	TGTACA	1 cut(s)	912
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	8 cut(s)	228, 238, 323, 411, 459, 644, 779, 784
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	746, 851, 863
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	220, 704
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 445
BstNSI	RCATGY	1 cut(s)	672
BstSFI	CTRYAG	3 cut(s)	446, 537, 827
BstV1I	GCAGC	4 cut(s)	443, 652, 660, 812
BstZ17I	GTATAC	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	746, 851, 863
BtsIMutI	CAGTG	3 cut(s)	20, 242, 747
Cac8I	GCNNGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	4 cut(s)	356, 453, 626, 913
CviAII	CATG	3 cut(s)	261, 669, 754
CviQI	GTAC	4 cut(s)	356, 453, 626, 913
DdeI	CTNAG	8 cut(s)	228, 238, 323, 411, 459, 644, 779, 784
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DrdI	GACNNNNNNGTC	1 cut(s)	742
DseDI	GACNNNNNNGTC	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	129, 229, 702
EarI	CTCTTC	3 cut(s)	129, 229, 702
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	2 cut(s)	260, 853
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	3 cut(s)	44, 289, 650
EcoICRI	GAGCTC	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	260, 853
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	260, 853
FaeI	CATG	3 cut(s)	264, 672, 757
FaiI	YATR	9 cut(s)	262, 300, 354, 471, 614, 670, 682, 755, 791
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	260, 668, 753
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	5 cut(s)	249, 432, 649, 666, 801
FokI	GGATG	3 cut(s)	733, 858, 870
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	5 cut(s)	249, 432, 649, 666, 801
FspBI	CTAG	2 cut(s)	117, 419
GluI	GCNGC	5 cut(s)	249, 432, 649, 666, 801
Hin1II	CATG	3 cut(s)	264, 672, 757
HinfI	GANTC	3 cut(s)	170, 361, 594
HphI	GGTGA	2 cut(s)	87, 827
Hpy166II	GTNNAC	2 cut(s)	682, 718
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	374, 419
Hpy8I	GTNNAC	2 cut(s)	682, 718
HpyAV	CCTTC	1 cut(s)	625
HpyCH4III	ACNGT	5 cut(s)	15, 277, 468, 715, 831
HpyCH4IV	ACGT	2 cut(s)	74, 575
HpyCH4V	TGCA	8 cut(s)	135, 272, 313, 431, 448, 530, 668, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 445
HpyF3I	CTNAG	8 cut(s)	228, 238, 323, 411, 459, 644, 779, 784
HpySE526I	ACGT	2 cut(s)	74, 575
Hsp92II	CATG	3 cut(s)	264, 672, 757
Kzo9I	GATC	1 cut(s)	376
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	282, 407, 516
Lsp1109I	GCAGC	4 cut(s)	443, 652, 660, 812
LweI	GCATC	2 cut(s)	539, 848
MaeI	CTAG	2 cut(s)	117, 419
MaeII	ACGT	2 cut(s)	74, 575
MaeIII	GTNAC	3 cut(s)	9, 93, 188
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	6 cut(s)	116, 216, 295, 434, 478, 719
MhlI	GDGCHC	3 cut(s)	124, 287, 412
MluCI	AATT	3 cut(s)	53, 139, 500
MmeI	TCCRAC	2 cut(s)	62, 851
MnlI	CCTC	9 cut(s)	109, 117, 169, 232, 326, 382, 507, 716, 901
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	155, 899
MspA1I	CMGCKG	2 cut(s)	536, 770
MwoI	GCNNNNNNNGC	2 cut(s)	248, 445
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	264, 672, 757
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	170, 361, 594
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	5 cut(s)	250, 433, 650, 667, 802
Psp124BI	GAGCTC	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	889
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	450
PvuII	CAGCTG	2 cut(s)	536, 770
RsaI	GTAC	4 cut(s)	357, 454, 627, 914
RsaNI	GTAC	4 cut(s)	356, 453, 626, 913
SacI	GAGCTC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	155, 899
SatI	GCNGC	5 cut(s)	249, 432, 649, 666, 801
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	454
SduI	GDGCHC	3 cut(s)	124, 287, 412
SfaNI	GCATC	2 cut(s)	539, 848
SfcI	CTRYAG	3 cut(s)	446, 537, 827
SinI	GGWCC	1 cut(s)	602
Sse9I	AATT	3 cut(s)	53, 139, 500
SsiI	CCGC	2 cut(s)	104, 248
SspMI	CTAG	2 cut(s)	117, 419
SstI	GAGCTC	1 cut(s)	412
StyI	CCWWGG	2 cut(s)	260, 853
TaaI	ACNGT	5 cut(s)	15, 277, 468, 715, 831
TaiI	ACGT	2 cut(s)	77, 578
TasI	AATT	3 cut(s)	53, 139, 500
TatI	WGTACW	4 cut(s)	355, 452, 625, 912
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	170, 361, 594
Tru1I	TTAA	2 cut(s)	155, 899
Tru9I	TTAA	2 cut(s)	155, 899
TscAI	CASTG	3 cut(s)	20, 249, 747
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	4 cut(s)	431, 648, 665, 800
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	415, 586, 770
TspRI	CASTG	3 cut(s)	20, 249, 747
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	117, 419
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.