Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012548

Physical Location & Seq

Genomic Coordinates Forward (+)

8935537 .. 8937554

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGAGGATCGTGAGAAGTTGTTTACAGTCCATGTTAAAGCTCGTGAATTCTCTAATTGGGATGGTTGGGATTGCTATGATTCTCTACGCTGTTTGGCTGATTAGGCAATGGCAAGAACAAATGGGAAATCTTCCTTTTGCTGATTCTGATCACCCTGTTCCGTGGTTCATTTATTCATTTCTTGGTCTCGGGGCCATTCTCTGTGTTGTCACTTGTGCCGGGCACATAGCTGCTGAAACCGTGAATGGATGTTGCCTTTACTTGTATATGGGATTCATAGTCTTGCTAACTATGGTTGAAGGCGGTGTAGTTGCCGATATCTTTCTAAACCGTGACTGGAAAAAGGACTTTCCAGAGGATCCAAGTGGTGCTTTCCACCAGTTCTCTAAGTTCATCGAGTCAAACTTCAAGATTTGCAAGTGGATAGGTCTCTCTATTGTCTGTGTCCAGGGTCTATCAGTTTTAATAGCCATGTTGCTCAAAGCTCTTGGACCTCACCCTCACCGACATTATGATAGTGACGATGAATACAATGTAAGCACAGTTGCACTCCTGCAGGATGCTCGTCAGCCGCCTCCATACGTTGTTGGAGAACCCATGTATGGAGCCAAACCGGGAGCTTGGACAGTTAGATTAATGAAAGGGCAAACCGGTGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

221

Amino Acids

24.66

Weight (kDa)

6.58

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20740 AT2G20740 AT2G20740
fragaria_vesca	FvH4_6g26130 FvH4_6g26130
malus_domestica	MD17G1242500.v1.1
prunus_persica	Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1
pyrus_communis	pycom17g24530
rosa_chinensis	RchiOBHm_Chr2g0126211
rosa_multiflora	Rmu_sc0004444.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117380
rosa_rugosa	Rorug02G0261700 Rorug02G0261800 Rorug02G0261800
rosa_samantha	Rh2BG327300
rosa_wichuraiana	Rw2G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	306, 575
AclWI	GGATC	3 cut(s)	17, 356, 369
AcsI	RAATTY	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	605, 660
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	2 cut(s)	302, 412
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	4 cut(s)	43, 233, 488, 623
AluI	AGCT	4 cut(s)	43, 233, 488, 623
Alw26I	GTCTC	2 cut(s)	194, 437
AlwI	GGATC	3 cut(s)	17, 356, 369
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	49
AseI	ATTAAT	1 cut(s)	638
AsiGI	ACCGGT	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	195, 494
AsuC2I	CCSGG	2 cut(s)	223, 618
AsuHPI	GGTGA	4 cut(s)	16, 146, 491, 497
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	452
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	2 cut(s)	223, 618
BcoDI	GTCTC	2 cut(s)	194, 437
BfmI	CTRYAG	1 cut(s)	557
BisI	GCNGC	2 cut(s)	234, 575
BlsI	GCNGC	2 cut(s)	235, 576
Bme1390I	CCNGG	3 cut(s)	223, 452, 618
Bme18I	GGWCC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	195, 494
BmiI	GGNNCC	3 cut(s)	196, 363, 610
BmrFI	CCNGG	3 cut(s)	223, 452, 618
BmsI	GCATC	1 cut(s)	553
BpuMI	CCSGG	2 cut(s)	223, 618
BsaBI	GATNNNNATC	1 cut(s)	150
BsaI	GGTCTC	2 cut(s)	194, 437
BsaJI	CCNNGG	2 cut(s)	164, 451
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 660
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	2 cut(s)	344, 382
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	164, 451
BseGI	GGATG	3 cut(s)	69, 257, 568
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	605, 660
BseMI	GCAATG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	344, 382
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	197
BshTI	ACCGGT	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	222, 617, 654
BslI	CCNNNNNNNGG	2 cut(s)	605, 660
BsmAI	GTCTC	2 cut(s)	194, 437
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	2 cut(s)	194, 437
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	9, 151, 361
BspACI	CCGC	2 cut(s)	306, 575
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	196, 363, 610
BspMAI	CTGCAG	1 cut(s)	561
BspPI	GGATC	3 cut(s)	17, 356, 369
BspTNI	GGTCTC	2 cut(s)	194, 437
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	344, 382
BssAI	RCCGGY	1 cut(s)	653
BssECI	CCNNGG	2 cut(s)	164, 451
BssMI	GATC	3 cut(s)	9, 151, 361
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	5 cut(s)	30, 244, 335, 547, 631
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	69, 257, 568
BstKTI	GATC	3 cut(s)	12, 154, 364
BstMAI	GTCTC	2 cut(s)	194, 437
BstMBI	GATC	3 cut(s)	9, 151, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	3 cut(s)	221, 450, 616
BstSFI	CTRYAG	1 cut(s)	557
BstSLI	GKGCMC	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	69, 257, 568
Cfr10I	RCCGGY	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	195, 494
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	3 cut(s)	34, 475, 601
CviJI	RGCY	9 cut(s)	43, 100, 197, 233, 473, 488, 574, 611, 623
CviKI_1	RGCY	9 cut(s)	43, 100, 197, 233, 473, 488, 574, 611, 623
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	3 cut(s)	11, 153, 363
DpnII	GATC	3 cut(s)	9, 151, 361
Eco31I	GGTCTC	2 cut(s)	194, 437
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	322
FaeI	CATG	3 cut(s)	37, 478, 604
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FatI	CATG	3 cut(s)	33, 474, 600
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	234, 575
FokI	GGATG	3 cut(s)	76, 264, 575
Fsp4HI	GCNGC	2 cut(s)	234, 575
GluI	GCNGC	2 cut(s)	234, 575
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	3 cut(s)	222, 617, 654
Hin1II	CATG	3 cut(s)	37, 478, 604
HinfI	GANTC	4 cut(s)	82, 146, 276, 401
HpaII	CCGG	3 cut(s)	222, 617, 654
HphI	GGTGA	4 cut(s)	16, 146, 491, 497
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	13, 46, 356, 412
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	5 cut(s)	30, 244, 335, 547, 631
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	420, 551, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	37, 478, 604
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	9, 151, 361
LmnI	GCTCC	2 cut(s)	608, 620
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	553
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	211, 335, 521
MalI	GATC	3 cut(s)	11, 153, 363
MboI	GATC	3 cut(s)	9, 151, 361
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	2 cut(s)	49, 57
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	5 cut(s)	352, 507, 513, 588, 654
MseI	TTAA	3 cut(s)	38, 467, 638
MspI	CCGG	3 cut(s)	222, 617, 654
MspR9I	CCNGG	3 cut(s)	223, 452, 618
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	2 cut(s)	223, 618
NdeII	GATC	3 cut(s)	9, 151, 361
NlaIII	CATG	3 cut(s)	37, 478, 604
NlaIV	GGNNCC	3 cut(s)	196, 363, 610
NmuCI	GTSAC	3 cut(s)	211, 335, 521
PfeI	GAWTC	3 cut(s)	82, 146, 276
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	2 cut(s)	235, 576
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	3 cut(s)	196, 363, 610
PspPI	GGNCC	2 cut(s)	195, 494
PstI	CTGCAG	1 cut(s)	561
PsuI	RGATCY	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	38, 467, 638
SatI	GCNGC	2 cut(s)	234, 575
Sau3AI	GATC	3 cut(s)	9, 151, 361
Sau96I	GGNCC	2 cut(s)	195, 494
SbfI	CCTGCAGG	1 cut(s)	561
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	223, 452, 618
SdaI	CCTGCAGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	8 cut(s)	45, 235, 433, 490, 499, 588, 625, 665
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	494
Sse8387I	CCTGCAGG	1 cut(s)	561
Sse9I	AATT	2 cut(s)	49, 57
SsiI	CCGC	2 cut(s)	306, 575
StyD4I	CCNGG	3 cut(s)	221, 450, 616
TaaI	ACNGT	5 cut(s)	30, 244, 335, 547, 631
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	49, 57
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	82, 146, 276
Tru1I	TTAA	3 cut(s)	38, 467, 638
Tru9I	TTAA	3 cut(s)	38, 467, 638
TseFI	GTSAC	3 cut(s)	211, 335, 521
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	3 cut(s)	211, 335, 521
TspDTI	ATGAA	6 cut(s)	160, 168, 268, 385, 543, 656
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	638
XapI	RAATTY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.