Prupe.3G155500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012548
Physical Location & Seq
Forward (+)
17367943 .. 17373943
6001 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G155500.4

Sequence Viewer

Length: 657 bp
ATGGGCGGGGTGGTAAGGAGCTGCGTACAATCAATCCTCAAGTTGGTGAACTCGGTGATTGGGATGGTTGGGTTGGCCATGATCATGTACTCCTTGTGGTTGATTAGGTCCTGGCAAAGGAACATGGGTCACTTGTCATTTGATCATTCTCATCATCATCCAATACCTTGGTTTATATACTCTATTCTTGGCCTTGGGATCACCCTGTGTGTGATCACATGCTCAGGTCATATTGCTGCAGACACTGCAAATGGTTGTTGCCTTTATTCGTACATGGTGTTTGTCTTCTTACTCCTCATGCTTGAAGCTGGAGTGGCAGCTGACATATTTCTAAACCATGACTGGGAAGAGGACTTTCCAGATGATCCAACTGGGAGATTTGATCAATTCAAAGAATTTGTGAGGTTGAACTTTGATATCTGCAAATGGATTGGCTTGTCAATTGTGTGTGTGCAGGGACTGTCTTTGTTATTGGCAATGATACTCAAAGCTCTTGGGCCACATCAGTATTATGATAGTGATGATGAGTACGTTACTGAGAGAGTTCCGCTCCTGAAGAATGCTGTTCTCCCACCTCCTTATGTCATTGGTGACCCTGTATATGGGTCCAAAAACGATGCATGGAACATAAGGATCAATGACAAGGCAACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

219

Amino Acids

24.59

Weight (kDa)

5.67

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 2 cut(s) 6, 548
AclWI GGATC 3 cut(s) 206, 359, 641
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 575
AdeI CACNNNGTG 1 cut(s) 207
AfaI GTAC 4 cut(s) 27, 89, 272, 530
AfiI CCNNNNNNNGG 4 cut(s) 43, 117, 343, 602
AgsI TTSAA 3 cut(s) 305, 391, 409
AjnI CCWGG 2 cut(s) 110, 650
AluBI AGCT 4 cut(s) 21, 308, 320, 491
AluI AGCT 4 cut(s) 21, 308, 320, 491
AlwI GGATC 3 cut(s) 206, 359, 641
AlwNI CAGNNNCTG 2 cut(s) 245, 460
AoxI GGCC 3 cut(s) 75, 190, 497
ApeKI GCWGC 3 cut(s) 21, 236, 317
ApoI RAATTY 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 108, 497, 606
AsuHPI GGTGA 4 cut(s) 58, 67, 193, 602
AvaII GGWCC 2 cut(s) 108, 606
BalI TGGCCA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 8, 223, 329
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 112, 652
BclI TGATCA 4 cut(s) 81, 142, 213, 382
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 3 cut(s) 22, 237, 318
BlsI GCNGC 3 cut(s) 23, 238, 319
Bme1390I CCNGG 2 cut(s) 112, 652
Bme18I GGWCC 2 cut(s) 108, 606
BmgT120I GGNCC 3 cut(s) 108, 497, 606
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 2 cut(s) 112, 652
BmrI ACTGGG 2 cut(s) 352, 381
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 2 cut(s) 352, 381
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 534, 566
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 167, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 117, 343, 602
Bse1I ACTGG 2 cut(s) 347, 376
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 112, 652
BseDI CCNNGG 2 cut(s) 167, 193
BseGI GGATG 2 cut(s) 69, 157
BseLI CCNNNNNNNGG 4 cut(s) 43, 117, 343, 602
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 237, 528
BseNI ACTGG 2 cut(s) 347, 376
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 8, 223, 329
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 3 cut(s) 77, 192, 499
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 4 cut(s) 43, 117, 343, 602
BsmFI GGGAC 1 cut(s) 471
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 77, 192, 499
Bsp143I GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
BspACI CCGC 2 cut(s) 6, 548
BspANI GGCC 3 cut(s) 77, 192, 499
BspCNI CTCAG 2 cut(s) 236, 529
BspLI GGNNCC 1 cut(s) 607
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 3 cut(s) 206, 359, 641
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 2 cut(s) 347, 376
BssECI CCNNGG 2 cut(s) 167, 193
BssMI GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
BssT1I CCWWGG 2 cut(s) 167, 193
Bst2UI CCWGG 2 cut(s) 112, 652
Bst4CI ACNGT 1 cut(s) 462
Bst6I CTCTTC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 223, 537
BstEII GGTNACC 1 cut(s) 590
BstENI CCTNNNNNAGG 1 cut(s) 115
BstF5I GGATG 2 cut(s) 69, 157
BstKTI GATC 7 cut(s) 84, 145, 201, 216, 367, 385, 636
BstMBI GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
BstMWI GCNNNNNNNGC 2 cut(s) 245, 314
BstNI CCWGG 2 cut(s) 112, 652
BstNSI RCATGY 1 cut(s) 222
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 2 cut(s) 110, 650
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 8, 223, 329
BstV2I GAAGAC 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 3 cut(s) 77, 192, 499
BtsCI GGATG 2 cut(s) 69, 157
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
CaiI CAGNNNCTG 2 cut(s) 245, 460
Cfr13I GGNCC 3 cut(s) 108, 497, 606
CsiI ACCWGGT 1 cut(s) 650
Csp6I GTAC 4 cut(s) 26, 88, 271, 529
CviAII CATG 8 cut(s) 79, 85, 124, 219, 274, 298, 338, 621
CviJI RGCY 8 cut(s) 21, 77, 192, 308, 320, 435, 491, 499
CviKI_1 RGCY 8 cut(s) 21, 77, 192, 308, 320, 435, 491, 499
CviQI GTAC 4 cut(s) 26, 88, 271, 529
DdeI CTNAG 2 cut(s) 223, 537
DpnI GATC 7 cut(s) 83, 144, 200, 215, 366, 384, 635
DpnII GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
DraIII CACNNNGTG 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 167, 193
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 108, 606
Eco57I CTGAAG 1 cut(s) 575
Eco91I GGTNACC 1 cut(s) 590
EcoNI CCTNNNNNAGG 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 110, 650
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 167, 193
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 2 cut(s) 167, 193
FaeI CATG 8 cut(s) 82, 88, 127, 222, 277, 301, 341, 624
FaqI GGGAC 1 cut(s) 471
FatI CATG 8 cut(s) 78, 84, 123, 218, 273, 297, 337, 620
FbaI TGATCA 4 cut(s) 81, 142, 213, 382
Fnu4HI GCNGC 3 cut(s) 22, 237, 318
FokI GGATG 2 cut(s) 76, 144
Fsp4HI GCNGC 3 cut(s) 22, 237, 318
GluI GCNGC 3 cut(s) 22, 237, 318
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 3 cut(s) 77, 192, 499
Hin1II CATG 8 cut(s) 82, 88, 127, 222, 277, 301, 341, 624
HphI GGTGA 4 cut(s) 58, 67, 193, 602
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 359, 553
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 5 cut(s) 239, 248, 423, 454, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 314
HpyF3I CTNAG 2 cut(s) 223, 537
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 8 cut(s) 82, 88, 127, 222, 277, 301, 341, 624
Ksp22I TGATCA 4 cut(s) 81, 142, 213, 382
Kzo9I GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
LmnI GCTCC 2 cut(s) 18, 555
Lsp1109I GCAGC 3 cut(s) 8, 223, 329
LweI GCATC 1 cut(s) 607
MabI ACCWGGT 1 cut(s) 650
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 128, 532, 590
MalI GATC 7 cut(s) 83, 144, 200, 215, 366, 384, 635
MbiI CCGCTC 1 cut(s) 550
MboI GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
MboII GAAGA 3 cut(s) 277, 359, 568
MfeI CAATTG 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 3 cut(s) 386, 395, 441
MluNI TGGCCA 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 47, 305, 343, 396, 585
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 622
MscI TGGCCA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 112, 652
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 112, 652
MwoI GCNNNNNNNGC 2 cut(s) 245, 314
NdeII GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
NlaIII CATG 8 cut(s) 82, 88, 127, 222, 277, 301, 341, 624
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 2 cut(s) 128, 590
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 222
PctI GAATGC 1 cut(s) 565
PkrI GCNGC 3 cut(s) 23, 238, 319
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 110, 650
PspEI GGTNACC 1 cut(s) 590
PspGI CCWGG 2 cut(s) 110, 650
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 3 cut(s) 108, 497, 606
PspPPI RGGWCCY 1 cut(s) 108
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 2 cut(s) 245, 460
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 4 cut(s) 27, 89, 272, 530
RsaNI GTAC 4 cut(s) 26, 88, 271, 529
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 3 cut(s) 22, 237, 318
Sau3AI GATC 7 cut(s) 81, 142, 198, 213, 364, 382, 633
Sau96I GGNCC 3 cut(s) 108, 497, 606
ScrFI CCNGG 2 cut(s) 112, 652
SexAI ACCWGGT 1 cut(s) 650
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 2 cut(s) 108, 606
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 3 cut(s) 386, 395, 441
SsiI CCGC 2 cut(s) 6, 548
StyD4I CCNGG 2 cut(s) 110, 650
StyI CCWWGG 2 cut(s) 167, 193
TaaI ACNGT 1 cut(s) 462
TaiI ACGT 1 cut(s) 534
TasI AATT 3 cut(s) 386, 395, 441
TatI WGTACW 1 cut(s) 87
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 128, 590
TseI GCWGC 3 cut(s) 21, 236, 317
Tsp45I GTSAC 2 cut(s) 128, 590
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 108, 606
XagI CCTNNNNNAGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 395
XceI RCATGY 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.