Rorug02G0261700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012548
Physical Location & Seq
Forward (+)
27474142 .. 27475245
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0261700.1

Sequence Viewer

Length: 1104 bp
ATGCTCTTTTTTGTCATCTCAGGCCTTGTGGTGAATCTCATTCAAGCCATTTTCTTCGTCCTGATTCGGCCCTTATCTAAGAATATATACAGAAGGATAAACGGAGTAGTGGCAGAATTGTTATGGCTGGAGGTGGTGTGGCTCGTGGAGTGGGGTGCAGGCCTTGAGATTCAAGTACACACAGATAATGACCCCAAAACAATGACCGGCGTGATGGGTAGAGAAAATGCCATTGTCGTTTCTAATTACGGAAATGATATCAATTTCATTCCGGTCCTGGCTCAGCGCTCTGGTTGCCTCTGCAGCTCATTATTTAGTGTCAACGGTAAATTCACCAAGTTCCTTCCTGTCATCGGTTGGGCGATGTGGTTCTCTGAAAATATCTTTATGGAGAGTAACTATTGGGGTCCGAACCAAGACAAAGCCTCGGCATATATATCAGGTCTCCGTGGACTCAAGAACTTCCCTCGGCCTATATGGATGACTCTACGTTCAGAAGAAACAGGGGGAGGTGGGATGAGAAGTGAGGCCATTGTCTCTGTAGTGAAACACATGAGGTCTTTTGTTCCAGCCGTGTATGATGTTACAATCGCTTTCCCTGAAGTTCGTTCAGATTCACCTCAAACACTGTTACAACTCTTCTACGAGAGGCTGAGGCGACGAAAGTCATATGTGGTGCATGTGCATGTTAAGCGGCATGAGATTAGGGGTTTGCCTCGTAAACATGGTGCCCTTGAGAAATGGTGTGAGGGTGTGTTGGAGGCCAAGCAAGCCTTATTGGACCAACACAGAGCAGACCAAACTTTTGGTGACCAAGTACAAGTACTAGAAACATGCTCTGGTAAACGCCGGCCACTTATGCCTCTTTTGGTTGTTATCTCTTGGGCACTTGTATTTGTATTCTCGGCAATCAAGTTCCCCCTCTTGTCTTTACTAGTGCTACTCATTGCATCCTCAGGCCTGACTTTCTTTCTCAATCGGGGTCGCTTGTCTTCCCTACTGCTGAATCTTACAGCCTTCCTTCTTAGACGTGCTTTTGGTTCTCAAGTTGCATCACTTCTCCTCATTAGTGCTTCTTATTACATTTACTTCCTTCCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

367

Amino Acids

41.52

Weight (kDa)

9.74

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 219 - 295 7.5e-12 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AciI CCGC 1 cut(s) 694
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 3 cut(s) 177, 819, 825
AfeI AGCGCT 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 44, 173
AhlI ACTAGT 1 cut(s) 934
AjiI CACGTC 1 cut(s) 1031
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 449, 541
Aor51HI AGCGCT 1 cut(s) 287
AoxI GGCC 8 cut(s) 22, 68, 160, 470, 528, 762, 851, 958
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 4 cut(s) 69, 274, 407, 781
AsuHPI GGTGA 4 cut(s) 43, 325, 609, 821
AvaII GGWCC 3 cut(s) 274, 407, 781
AxyI CCTNAGG 1 cut(s) 955
BaeGI GKGCMC 2 cut(s) 733, 889
BanI GGYRCC 1 cut(s) 728
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 984
BbvCI CCTCAGC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 315
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 449, 541
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 2 cut(s) 827, 935
BfmI CTRYAG 2 cut(s) 301, 540
BfoI RGCGCY 1 cut(s) 289
BisI GCNGC 2 cut(s) 304, 695
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 2 cut(s) 305, 696
BmcAI AGTACT 1 cut(s) 825
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 3 cut(s) 274, 407, 781
BmgBI CACGTC 1 cut(s) 1031
BmgT120I GGNCC 4 cut(s) 69, 274, 407, 781
BmiI GGNNCC 2 cut(s) 408, 730
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 959, 1061
BoxI GACNNNNGTC 1 cut(s) 664
BpiI GAAGAC 1 cut(s) 984
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 653
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 4 cut(s) 185, 440, 755, 1029
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 426, 448, 467
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse118I RCCGGY 2 cut(s) 206, 849
Bse21I CCTNAGG 1 cut(s) 955
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 426, 448, 467
BseGI GGATG 3 cut(s) 486, 522, 950
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 4 cut(s) 33, 296, 644, 969
BseRI GAGGAG 1 cut(s) 1052
BseSI GKGCMC 2 cut(s) 733, 889
BseXI GCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 8 cut(s) 24, 70, 162, 472, 530, 764, 853, 960
BshNI GGYRCC 1 cut(s) 728
BsiSI CCGG 3 cut(s) 207, 272, 850
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 449, 541
BsnI GGCC 8 cut(s) 24, 70, 162, 472, 530, 764, 853, 960
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 733, 889
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 1 cut(s) 694
BspANI GGCC 8 cut(s) 24, 70, 162, 472, 530, 764, 853, 960
BspCNI CTCAG 4 cut(s) 32, 295, 645, 968
BspLI GGNNCC 2 cut(s) 408, 730
BspMAI CTGCAG 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 945
BsrFI RCCGGY 2 cut(s) 206, 849
BssAI RCCGGY 2 cut(s) 206, 849
BssECI CCNNGG 3 cut(s) 426, 448, 467
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 326, 630
Bst6I CTCTTC 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 160, 771, 851
BstDEI CTNAG 7 cut(s) 19, 78, 282, 653, 955, 1025, 1101
BstDSI CCRYGG 1 cut(s) 448
BstEII GGTNACC 1 cut(s) 809
BstF5I GGATG 3 cut(s) 486, 522, 950
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstMAI GTCTC 2 cut(s) 449, 541
BstMWI GCNNNNNNNGC 5 cut(s) 294, 303, 691, 770, 859
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 3 cut(s) 683, 689, 837
BstPAI GACNNNNGTC 1 cut(s) 664
BstPI GGTNACC 1 cut(s) 809
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 301, 540
BstSLI GKGCMC 2 cut(s) 733, 889
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 984
BstXI CCANNNNNNTGG 1 cut(s) 806
Bsu36I CCTNAGG 1 cut(s) 955
BsuRI GGCC 8 cut(s) 24, 70, 162, 472, 530, 764, 853, 960
BtgI CCRYGG 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 377
BtrI CACGTC 1 cut(s) 1031
BtsCI GGATG 3 cut(s) 486, 522, 950
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 3 cut(s) 160, 771, 851
CfoI GCGC 1 cut(s) 288
Cfr10I RCCGGY 2 cut(s) 206, 849
Cfr13I GGNCC 4 cut(s) 69, 274, 407, 781
Csp6I GTAC 3 cut(s) 176, 818, 824
CviAII CATG 6 cut(s) 553, 680, 686, 698, 725, 834
CviQI GTAC 3 cut(s) 176, 818, 824
DdeI CTNAG 7 cut(s) 19, 78, 282, 653, 955, 1025, 1101
EaeI YGGCCR 1 cut(s) 851
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco147I AGGCCT 3 cut(s) 24, 162, 960
Eco31I GGTCTC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 3 cut(s) 274, 407, 781
Eco47III AGCGCT 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 621
Eco81I CCTNAGG 1 cut(s) 955
Eco91I GGTNACC 1 cut(s) 809
EcoO65I GGTNACC 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 259
FaeI CATG 6 cut(s) 556, 683, 689, 701, 728, 837
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FatI CATG 6 cut(s) 552, 679, 685, 697, 724, 833
FauNDI CATATG 1 cut(s) 670
Fnu4HI GCNGC 2 cut(s) 304, 695
FokI GGATG 3 cut(s) 493, 529, 937
Fsp4HI GCNGC 2 cut(s) 304, 695
FspBI CTAG 2 cut(s) 827, 935
GlaI GCGC 1 cut(s) 287
GluI GCNGC 2 cut(s) 304, 695
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 8 cut(s) 24, 70, 162, 472, 530, 764, 853, 960
HapII CCGG 3 cut(s) 207, 272, 850
HhaI GCGC 1 cut(s) 288
Hin1II CATG 6 cut(s) 556, 683, 689, 701, 728, 837
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 7 cut(s) 34, 64, 169, 453, 484, 614, 1006
HpaII CCGG 3 cut(s) 207, 272, 850
HphI GGTGA 4 cut(s) 43, 325, 609, 821
Hpy166II GTNNAC 5 cut(s) 178, 322, 452, 722, 845
Hpy188I TCNGA 4 cut(s) 376, 411, 496, 613
Hpy188III TCNNGA 2 cut(s) 61, 457
Hpy8I GTNNAC 5 cut(s) 178, 322, 452, 722, 845
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 5 cut(s) 87, 353, 1027, 1031, 1103
HpyCH4III ACNGT 2 cut(s) 326, 630
HpyCH4IV ACGT 2 cut(s) 490, 1030
HpyCH4V TGCA 6 cut(s) 158, 303, 679, 685, 950, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 294, 303, 691, 770, 859
HpyF3I CTNAG 7 cut(s) 19, 78, 282, 653, 955, 1025, 1101
HpySE526I ACGT 2 cut(s) 490, 1030
Hsp92II CATG 6 cut(s) 556, 683, 689, 701, 728, 837
HspAI GCGC 1 cut(s) 286
KroI GCCGGC 1 cut(s) 849
KroNI GCCGGC 1 cut(s) 851
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 2 cut(s) 959, 1061
MaeI CTAG 2 cut(s) 827, 935
MaeII ACGT 2 cut(s) 490, 1030
MaeIII GTNAC 4 cut(s) 395, 583, 630, 809
MboII GAAGA 4 cut(s) 46, 509, 631, 984
MhlI GDGCHC 2 cut(s) 733, 889
MluCI AATT 4 cut(s) 116, 244, 262, 329
MlyI GAGTC 2 cut(s) 447, 478
MmeI TCCRAC 1 cut(s) 738
MroNI GCCGGC 1 cut(s) 849
MseI TTAA 1 cut(s) 690
MslI CAYNNNNRTG 1 cut(s) 684
MspI CCGG 3 cut(s) 207, 272, 850
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 5 cut(s) 294, 303, 691, 770, 859
NaeI GCCGGC 1 cut(s) 851
NdeI CATATG 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 849
NlaIII CATG 6 cut(s) 556, 683, 689, 701, 728, 837
NlaIV GGNNCC 2 cut(s) 408, 730
NmeAIII GCCGAG 3 cut(s) 407, 448, 884
NmuCI GTSAC 1 cut(s) 809
NspI RCATGY 3 cut(s) 683, 689, 837
PceI AGGCCT 3 cut(s) 24, 162, 960
PdiI GCCGGC 1 cut(s) 851
PfeI GAWTC 5 cut(s) 34, 64, 169, 614, 1006
PkrI GCNGC 2 cut(s) 305, 696
PleI GAGTC 2 cut(s) 447, 478
PpsI GAGTC 2 cut(s) 447, 478
PshAI GACNNNNGTC 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 408, 730
PspPI GGNCC 4 cut(s) 69, 274, 407, 781
PstI CTGCAG 1 cut(s) 305
RsaI GTAC 3 cut(s) 177, 819, 825
RsaNI GTAC 3 cut(s) 176, 818, 824
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 2 cut(s) 304, 695
Sau96I GGNCC 4 cut(s) 69, 274, 407, 781
ScaI AGTACT 1 cut(s) 825
SchI GAGTC 2 cut(s) 447, 478
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 2 cut(s) 733, 889
SetI ASST 8 cut(s) 135, 308, 445, 493, 514, 560, 622, 1033
SfaNI GCATC 2 cut(s) 959, 1061
SfcI CTRYAG 2 cut(s) 301, 540
SinI GGWCC 3 cut(s) 274, 407, 781
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 4 cut(s) 164, 455, 734, 1044
SmoI CTYRAG 4 cut(s) 164, 455, 734, 1044
SpeI ACTAGT 1 cut(s) 934
Sse9I AATT 4 cut(s) 116, 244, 262, 329
SseBI AGGCCT 3 cut(s) 24, 162, 960
SsiI CCGC 1 cut(s) 694
SspMI CTAG 2 cut(s) 827, 935
StuI AGGCCT 3 cut(s) 24, 162, 960
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 326, 630
TaiI ACGT 2 cut(s) 493, 1033
TasI AATT 4 cut(s) 116, 244, 262, 329
TatI WGTACW 3 cut(s) 175, 817, 823
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 5 cut(s) 34, 64, 169, 614, 1006
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 3 cut(s) 117, 264, 437
TspRI CASTG 1 cut(s) 633
VpaK11BI GGWCC 3 cut(s) 274, 407, 781
XapI RAATTY 1 cut(s) 329
XceI RCATGY 3 cut(s) 683, 689, 837
XspI CTAG 2 cut(s) 827, 935
ZrmI AGTACT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.