Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012548

Physical Location & Seq

Genomic Coordinates Reverse (-)

27477396 .. 27479615

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTGATTCTTCTTCTTCTTCTTCTTCCTGTTGTTGCGCTCTTGGCTTTGGTCGCGTATCTGGAAGGGTTTCACTTCGTTGATTTCATGTGCTGTGTTACTGGTAACGTCACTCGGTGTGTGGCATTTTTCACTGCTGCGGTAGCTGCATCTGCTTATGTCGAAGTTTCAGGGGTGGGGTGGTTGATTTTGTTTGCATTTCACTTTTACTACCTGTTTGGGCTTTTCGCTTGGTGCAATGCAAGAGTTAGGAGGACTCAGAGGCGTCTTCGTAGAAGGCTCAGGTCTGTTTTAGCCTGGAGTCGGTGGATGTATTACCATGTTTGCTCAGCTCAGGCTTGTATGGACTTCCTGATCTTGTGTACATCGAAGAGGGGTACCCATCTGGGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

131

Amino Acids

15.07

Weight (kDa)

9.83

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20740 AT2G20740 AT2G20740
fragaria_vesca	FvH4_6g26130 FvH4_6g26130
malus_domestica	MD17G1242500.v1.1
prunus_persica	Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1
pyrus_communis	pycom17g24530
rosa_chinensis	RchiOBHm_Chr2g0126211
rosa_multiflora	Rmu_sc0004444.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117380
rosa_rugosa	Rorug02G0261700 Rorug02G0261800 Rorug02G0261800
rosa_samantha	Rh2BG327300
rosa_wichuraiana	Rw2G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	140, 391
AcyI	GRCGYC	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	364, 379
AfiI	CCNNNNNNNGG	2 cut(s)	303, 387
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	2 cut(s)	146, 332
AluI	AGCT	2 cut(s)	146, 332
ApeKI	GCWGC	2 cut(s)	137, 146
Asp700I	GAANNNNTTC	1 cut(s)	69
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	124, 133
BccI	CCATC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	298
BisI	GCNGC	2 cut(s)	138, 147
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	2 cut(s)	139, 148
Bme1390I	CCNGG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	281, 333
Bpu1102I	GCTNAGC	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 387
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	303, 387
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	4 cut(s)	272, 295, 342, 347
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	124, 133
Bsh1236I	CGCG	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	303, 387
Bsp1407I	TGTACA	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	354
Bsp1720I	GCTNAGC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	140, 391
BspCNI	CTCAG	4 cut(s)	271, 294, 341, 346
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	258, 281, 328, 333
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 53, 143, 146, 152
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	124, 133
BstV2I	GAAGAC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	40
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	363, 378
CviAII	CATG	2 cut(s)	88, 320
CviJI	RGCY	7 cut(s)	47, 146, 223, 280, 296, 332, 338
CviKI_1	RGCY	7 cut(s)	47, 146, 223, 280, 296, 332, 338
CviQI	GTAC	2 cut(s)	363, 378
DdeI	CTNAG	4 cut(s)	258, 281, 328, 333
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	91, 323
FaiI	YATR	4 cut(s)	89, 159, 321, 344
FatI	CATG	2 cut(s)	87, 319
Fnu4HI	GCNGC	2 cut(s)	138, 147
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	138, 147
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	138, 147
GsuI	CTGGAG	1 cut(s)	319
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	91, 323
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	3 cut(s)	7, 256, 301
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	2 cut(s)	62, 352
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	59, 270
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	149, 197, 237, 242
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 53, 143, 146, 152
HpyF3I	CTNAG	4 cut(s)	258, 281, 328, 333
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	91, 323
HspAI	GCGC	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	354
Lsp1109I	GCAGC	2 cut(s)	124, 133
LweI	GCATC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	3 cut(s)	97, 104, 109
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	7 cut(s)	5, 8, 11, 14, 17, 260, 382
MlyI	GAGTC	2 cut(s)	250, 310
MnlI	CCTC	3 cut(s)	246, 255, 366
MroXI	GAANNNNTTC	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	5 cut(s)	44, 53, 143, 146, 152
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	91, 323
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	139, 148
PleI	GAGTC	2 cut(s)	250, 309
PpsI	GAGTC	2 cut(s)	250, 309
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	379
RsaI	GTAC	2 cut(s)	364, 379
RsaNI	GTAC	2 cut(s)	363, 378
SatI	GCNGC	2 cut(s)	138, 147
Sau3AI	GATC	1 cut(s)	354
SchI	GAGTC	2 cut(s)	250, 310
ScrFI	CCNGG	1 cut(s)	298
SetI	ASST	5 cut(s)	111, 148, 216, 287, 334
SfaNI	GCATC	1 cut(s)	158
SsiI	CCGC	2 cut(s)	140, 391
StyD4I	CCNGG	1 cut(s)	296
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	162, 368
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	137, 146
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.