FvH4_6g26130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012548
Physical Location & Seq
Reverse (-)
19981735 .. 19988716
6982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26130.t1

Sequence Viewer

Length: 642 bp
ATGGCTGCGATGGCGAGGAGCTGCGTACAATCAATATTAAAGTTGGTGAACTCGGTGAATGGGATGGTTGGGCTGGCCATGATCTTGTACTCCTTGTGGTTGATTAGAGCCTGGCAGAAGTGCATCGGTTACTTGCCATTTGAAGACTCTGATTCTCCAACTATACCTTGGTTCATATACATTTTTCTTGGCCTTGGGGTTACTCTGTGTGTCATCACATGTTCAGGACATATTGCTGCAGACACTGCAAATGGTTGTTGCCTTTATTTGTACATGCTGTTCCTCTTTTTACTCCTCATGCTTGAAGCTGGAGTGACTGCTGATATATACTTAAACCATGACTGGGAAGAGGACTTTCCGGATGATCCAACTGGGAAATTTGATCAATTCAAAACATTTGTAATGTCAAACTTGGACATCTGCAAATGGATTAGCTTGTCAGTTATATGCGTACAGGGACTAACCCTTCTATTGGCAATGATACTCAAAGCTTTTGGGCCACATCATGATTATGATAGTGATGATGATTATGTTCCCGAGAGGGTTTCACTCCTGAATCACCCACCTCCTTATGTCATTGGTGACCCTATCTATGGGTCAGATGCTTGGCATACAAGGATCAACAAGAAGATAAACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

214

Amino Acids

24.04

Weight (kDa)

4.9

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 12 - 115 7.7e-10 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 358
AclWI GGATC 2 cut(s) 359, 626
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 377
AfaI GTAC 4 cut(s) 27, 89, 272, 453
AfiI CCNNNNNNNGG 3 cut(s) 343, 472, 593
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 3 cut(s) 143, 305, 391
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 4 cut(s) 21, 308, 435, 491
AluI AGCT 4 cut(s) 21, 308, 435, 491
AlwI GGATC 2 cut(s) 359, 626
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 536
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 3 cut(s) 75, 190, 497
ApeKI GCWGC 3 cut(s) 5, 21, 236
ApoI RAATTY 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 4 cut(s) 58, 67, 551, 593
AvaI CYCGRG 1 cut(s) 536
BalI TGGCCA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 8, 223
BccI CCATC 2 cut(s) 4, 58
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 3 cut(s) 6, 22, 237
BlsI GCNGC 3 cut(s) 7, 23, 238
Bme1390I CCNGG 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 497
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 2 cut(s) 352, 381
BmsI GCATC 2 cut(s) 132, 592
BmuI ACTGGG 2 cut(s) 352, 381
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 167, 193
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 472, 593
Bse1I ACTGG 2 cut(s) 347, 376
Bse3DI GCAATG 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 167, 193
BseGI GGATG 2 cut(s) 69, 367
BseLI CCNNNNNNNGG 3 cut(s) 343, 472, 593
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 2 cut(s) 347, 376
BseRI GAGGAG 2 cut(s) 31, 284
BseXI GCAGC 2 cut(s) 8, 223
BshFI GGCC 3 cut(s) 77, 192, 499
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 3 cut(s) 343, 472, 593
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 3 cut(s) 77, 192, 499
BsoBI CYCGRG 1 cut(s) 536
Bsp13I TCCGGA 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 4 cut(s) 81, 364, 382, 618
BspANI GGCC 3 cut(s) 77, 192, 499
BspEI TCCGGA 1 cut(s) 358
BspHI TCATGA 1 cut(s) 505
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 2 cut(s) 359, 626
BsrDI GCAATG 1 cut(s) 483
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 2 cut(s) 347, 376
BssECI CCNNGG 2 cut(s) 167, 193
BssMI GATC 4 cut(s) 81, 364, 382, 618
BssT1I CCWWGG 2 cut(s) 167, 193
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 581
BstF5I GGATG 2 cut(s) 69, 367
BstKTI GATC 4 cut(s) 84, 367, 385, 621
BstMBI GATC 4 cut(s) 81, 364, 382, 618
BstMWI GCNNNNNNNGC 2 cut(s) 11, 245
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 222, 277
BstPI GGTNACC 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 8, 223
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 77, 192, 499
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 69, 367
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 497
Csp6I GTAC 4 cut(s) 26, 88, 271, 452
CviAII CATG 6 cut(s) 79, 219, 274, 298, 338, 506
CviQI GTAC 4 cut(s) 26, 88, 271, 452
DpnI GATC 4 cut(s) 83, 366, 384, 620
DpnII GATC 4 cut(s) 81, 364, 382, 618
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 167, 193
Eco88I CYCGRG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 167, 193
ErhI CCWWGG 2 cut(s) 167, 193
FaeI CATG 6 cut(s) 82, 222, 277, 301, 341, 509
FaqI GGGAC 1 cut(s) 471
FatI CATG 6 cut(s) 78, 218, 273, 297, 337, 505
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 6, 22, 237
FokI GGATG 2 cut(s) 76, 374
Fsp4HI GCNGC 3 cut(s) 6, 22, 237
GluI GCNGC 3 cut(s) 6, 22, 237
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 3 cut(s) 77, 192, 499
HapII CCGG 1 cut(s) 359
Hin1II CATG 6 cut(s) 82, 222, 277, 301, 341, 509
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 3 cut(s) 146, 152, 556
HpaII CCGG 1 cut(s) 359
HphI GGTGA 4 cut(s) 58, 67, 551, 593
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 151, 601
Hpy188III TCNNGA 5 cut(s) 225, 359, 506, 536, 553
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 476
HpyCH4V TGCA 4 cut(s) 123, 239, 248, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 245
Hsp92II CATG 6 cut(s) 82, 222, 277, 301, 341, 509
Kpn2I TCCGGA 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 81, 364, 382, 618
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 2 cut(s) 8, 223
LweI GCATC 2 cut(s) 132, 592
MaeIII GTNAC 4 cut(s) 128, 199, 313, 581
MalI GATC 4 cut(s) 83, 366, 384, 620
MboI GATC 4 cut(s) 81, 364, 382, 618
MboII GAAGA 3 cut(s) 155, 359, 640
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 2 cut(s) 377, 386
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 182, 392
MnlI CCTC 6 cut(s) 9, 293, 305, 343, 534, 576
Mox20I TGGCCA 1 cut(s) 77
MroI TCCGGA 1 cut(s) 358
MscI TGGCCA 1 cut(s) 77
MseI TTAA 2 cut(s) 38, 332
MslI CAYNNNNRTG 1 cut(s) 510
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 11, 245
NdeII GATC 4 cut(s) 81, 364, 382, 618
NlaIII CATG 6 cut(s) 82, 222, 277, 301, 341, 509
NmuCI GTSAC 2 cut(s) 313, 581
NspI RCATGY 2 cut(s) 222, 277
PagI TCATGA 1 cut(s) 505
PciI ACATGT 1 cut(s) 218
PfeI GAWTC 2 cut(s) 152, 556
PkrI GCNGC 3 cut(s) 7, 23, 238
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 1 cut(s) 497
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 4 cut(s) 27, 89, 272, 453
RsaNI GTAC 4 cut(s) 26, 88, 271, 452
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 2 cut(s) 38, 332
SatI GCNGC 3 cut(s) 6, 22, 237
Sau3AI GATC 4 cut(s) 81, 364, 382, 618
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 112
SetI ASST 7 cut(s) 23, 169, 310, 437, 493, 568, 641
SfaNI GCATC 2 cut(s) 132, 592
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 2 cut(s) 377, 386
SspI AATATT 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 2 cut(s) 167, 193
TasI AATT 2 cut(s) 377, 386
TatI WGTACW 2 cut(s) 87, 270
TfiI GAWTC 2 cut(s) 152, 556
Tru1I TTAA 2 cut(s) 38, 332
Tru9I TTAA 2 cut(s) 38, 332
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 313, 581
TseI GCWGC 3 cut(s) 5, 21, 236
Tsp45I GTSAC 2 cut(s) 313, 581
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 377
XceI RCATGY 2 cut(s) 222, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.