Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004444.1

Orthogroup ID

OG0012548

Physical Location & Seq

Genomic Coordinates Reverse (-)

11610 .. 17082

Gene Structure 5473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004444.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgggtgggatggcgaggagctgcgtacaatcaattctaaagttggtgaactcggtgaatgggatggttgggctggccatggttttgtactcgttgtggttgattagagcctggcacaagagcatggctgacttgccatttgaagactctgattatccaacaatcccttggttcatatacatttttcttggccttggggttactctgtgtgtgatcacatgttcaggacatattgctgcagacactgcaaatggttgttgcctttatttgtacatgctgtttgtctttttactcctcatgcttgaaactggagtgactgctgatatatatttaaaccatgactgggaagaggactttcctgatgatccaactgggagatttgatcaattcaaagcatttgtaaggtcaaacttggacatctgcaaatggattggcatgtcagttatatgcgtacagggacttacattgttattggcaatgatactcaaagcttttgggccacatcattattatgatagtgatgatgataatgttcctgagagggtttcacttctgaatcaccccaatccttatgtcgttggcgaccctatttatggttccaaaaatgatgcttggcatataaggatcaacagcaaggtaaaattgttaaaaaccttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

219

Amino Acids

24.74

Weight (kDa)

5.36

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20740 AT2G20740 AT2G20740
fragaria_vesca	FvH4_6g26130 FvH4_6g26130
malus_domestica	MD17G1242500.v1.1
prunus_persica	Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1 Prupe.3G155500_v2.0.a1
pyrus_communis	pycom17g24530
rosa_chinensis	RchiOBHm_Chr2g0126211
rosa_multiflora	Rmu_sc0004444.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117380
rosa_rugosa	Rorug02G0261700 Rorug02G0261800 Rorug02G0261800
rosa_samantha	Rh2BG327300
rosa_wichuraiana	Rw2G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	359, 632
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	4 cut(s)	27, 89, 272, 453
AfiI	CCNNNNNNNGG	2 cut(s)	343, 593
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	143, 305, 391
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	21, 491
AluI	AGCT	2 cut(s)	21, 491
AlwI	GGATC	2 cut(s)	359, 632
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	75, 190, 497
ApeKI	GCWGC	2 cut(s)	21, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	58, 67, 551
BalI	TGGCCA	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	8, 223
BccI	CCATC	2 cut(s)	4, 58
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	2 cut(s)	213, 382
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	22, 237
BlsI	GCNGC	2 cut(s)	23, 238
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	2 cut(s)	352, 381
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	2 cut(s)	352, 381
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	78, 167, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 593
Bse1I	ACTGG	3 cut(s)	313, 347, 376
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	78, 167, 193
BseGI	GGATG	2 cut(s)	15, 69
BseLI	CCNNNNNNNGG	2 cut(s)	343, 593
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	3 cut(s)	313, 347, 376
BseRI	GAGGAG	2 cut(s)	31, 284
BseXI	GCAGC	2 cut(s)	8, 223
BshFI	GGCC	3 cut(s)	77, 192, 499
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	2 cut(s)	343, 593
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	77, 192, 499
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	213, 364, 382, 624
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	3 cut(s)	77, 192, 499
BspCNI	CTCAG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	598
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	359, 632
BsrDI	GCAATG	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	313, 347, 376
BssECI	CCNNGG	3 cut(s)	78, 167, 193
BssMI	GATC	4 cut(s)	213, 364, 382, 624
BssT1I	CCWWGG	3 cut(s)	78, 167, 193
Bst2UI	CCWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	15, 69
BstKTI	GATC	4 cut(s)	216, 367, 385, 627
BstMBI	GATC	4 cut(s)	213, 364, 382, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	3 cut(s)	222, 277, 439
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	8, 223
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	77, 192, 499
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	15, 69
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	4 cut(s)	26, 88, 271, 452
CviAII	CATG	7 cut(s)	79, 124, 219, 274, 298, 338, 436
CviJI	RGCY	8 cut(s)	21, 73, 77, 110, 128, 192, 491, 499
CviKI_1	RGCY	8 cut(s)	21, 73, 77, 110, 128, 192, 491, 499
CviQI	GTAC	4 cut(s)	26, 88, 271, 452
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	4 cut(s)	215, 366, 384, 626
DpnII	GATC	4 cut(s)	213, 364, 382, 624
DraI	TTTAAA	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	3 cut(s)	78, 167, 193
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	3 cut(s)	78, 167, 193
ErhI	CCWWGG	3 cut(s)	78, 167, 193
FaeI	CATG	7 cut(s)	82, 127, 222, 277, 301, 341, 439
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	7 cut(s)	78, 123, 218, 273, 297, 337, 435
FbaI	TGATCA	2 cut(s)	213, 382
Fnu4HI	GCNGC	2 cut(s)	22, 237
FokI	GGATG	2 cut(s)	22, 76
Fsp4HI	GCNGC	2 cut(s)	22, 237
GluI	GCNGC	2 cut(s)	22, 237
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	77, 192, 499
Hin1II	CATG	7 cut(s)	82, 127, 222, 277, 301, 341, 439
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	146, 556
HphI	GGTGA	3 cut(s)	58, 67, 551
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	151, 555
Hpy188III	TCNNGA	3 cut(s)	225, 359, 536
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	239, 248, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	537
Hsp92II	CATG	7 cut(s)	82, 127, 222, 277, 301, 341, 439
Ksp22I	TGATCA	2 cut(s)	213, 382
Kzo9I	GATC	4 cut(s)	213, 364, 382, 624
LmnI	GCTCC	1 cut(s)	18
Lsp1109I	GCAGC	2 cut(s)	8, 223
LweI	GCATC	1 cut(s)	598
MaeIII	GTNAC	2 cut(s)	199, 313
MalI	GATC	4 cut(s)	215, 366, 384, 626
MboI	GATC	4 cut(s)	213, 364, 382, 624
MboII	GAAGA	2 cut(s)	155, 359
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	3 cut(s)	33, 386, 641
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	182, 392
MnlI	CCTC	4 cut(s)	9, 305, 343, 534
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	2 cut(s)	332, 647
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	4 cut(s)	213, 364, 382, 624
NlaIII	CATG	7 cut(s)	82, 127, 222, 277, 301, 341, 439
NlaIV	GGNNCC	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	3 cut(s)	222, 277, 439
PciI	ACATGT	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	23, 238
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	245
RsaI	GTAC	4 cut(s)	27, 89, 272, 453
RsaNI	GTAC	4 cut(s)	26, 88, 271, 452
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	332, 647
SatI	GCNGC	2 cut(s)	22, 237
Sau3AI	GATC	4 cut(s)	213, 364, 382, 624
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	112
SetI	ASST	5 cut(s)	23, 407, 493, 639, 656
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	3 cut(s)	33, 386, 641
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	3 cut(s)	78, 167, 193
TasI	AATT	3 cut(s)	33, 386, 641
TatI	WGTACW	2 cut(s)	87, 270
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	2 cut(s)	332, 647
Tru9I	TTAA	2 cut(s)	332, 647
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	21, 236
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	250
XceI	RCATGY	3 cut(s)	222, 277, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.