Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Forward (+)

9034056 .. 9036636

Gene Structure 2581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGAACGGTGAGAAAGCAGCTGAGACTGTCGTTGTTGGGAACTATGTTGAGATGGAGAAGGATGGTAAAGCTTTAGACATCAAATCTAAGCTATCTGACATGTTTTGGCATGGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTGTTGACACTGCCATACTCGTTCTCACAGCTGGGGATGCTCTCAGGGATTCTGTTTCAGCTCTTTTATGGCATCTTAGGTAGTTGGACTGCTTACCTCATCAGTATTCTCTATGTTGAATACAGAACCAGAAAGGAAAGAGAGAAAGTTAACTTCAGAAACCATGTCATTCAGTGGTTTGAGGTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACAGTCTTTATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGGTAGAAGGAGTGAAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTACACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCTCAGAAGTTCAAGTCCATATACCTGTTTGCAACACTCTACGTGCTGACGCTAACGCTGCCTTCTGCGTCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAACCATTCAAACGCATTTGCTCTTCTCCCAAAGAATCTTTACCGTGACTTTGCAGTTGTGCTTATGCTCATCCATCAGTTCATCACCTTTGGTTTTGCTTGCACGCCACTCTACTTTGTGTGGGAGAAGCTAATAGGGATGCATGAGTGCAGAAGCATGTGTAAACGAGCCGCTGCGAGGCTCCCTGTCGTTATACCCATTTGGTTTCTTGCTATCATATTCCCGTTCTTTGGTCCCATTAACTCAACCGTAGGATCTCTTCTCGTCAGCTTCACTGTCTACATCATCCCAGCACTAGCTCACATCTTCACCTTCCGCTCATCCGCCGCACGTGAAAACGCTGTGGAGCAGCCACCAAGGTTTCTAGGACGATGGACTGGGGCATTCACGATCAATGCCTTCATAGTTGTGTGGGTGTTCATTGTTGGATTCGGGTTCGGTGGTTGGGCTAGTATGATCAATTTTGTACACCAGATTGACACCTTTGGCCTCTTCACCAAATGCTACCAATGCCCACCACCGGTTATGGTCTCACCTCCTCCAATCAGCCATCCTCACTTCAATCACACTCACGGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

483

Amino Acids

54.7

Weight (kDa)

8.87

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	38 - 431	6.8e-79	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	609
AccBSI	CCGCTC	1 cut(s)	1188
AccI	GTMKAC	1 cut(s)	1149
AciI	CCGC	5 cut(s)	839, 1041, 1186, 1194, 1197
AclWI	GGATC	3 cut(s)	436, 572, 1132
AcuI	CTGAAG	1 cut(s)	310
AcvI	CACGTG	1 cut(s)	1202
AfaI	GTAC	2 cut(s)	611, 1338
AfiI	CCNNNNNNNGG	4 cut(s)	640, 1047, 1100, 1390
AflIII	ACRYGT	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	1390
AgsI	TTSAA	5 cut(s)	290, 440, 778, 879, 1432
Alw26I	GTCTC	2 cut(s)	20, 1405
AlwI	GGATC	3 cut(s)	436, 572, 1132
AlwNI	CAGNNNCTG	1 cut(s)	567
AoxI	GGCC	3 cut(s)	696, 1357, 1444
ApeKI	GCWGC	4 cut(s)	20, 823, 1043, 1219
AsiGI	ACCGGT	1 cut(s)	1390
Asp718I	GGTACC	1 cut(s)	609
AspS9I	GGNCC	3 cut(s)	665, 696, 1103
AsuHPI	GGTGA	7 cut(s)	23, 607, 869, 946, 1171, 1357, 1395
AvaII	GGWCC	2 cut(s)	665, 1103
BanI	GGYRCC	1 cut(s)	609
BarI	GAAGNNNNNNTAC	2 cut(s)	1113, 1145
BbrPI	CACGTG	1 cut(s)	1202
BbvI	GCAGC	4 cut(s)	32, 810, 1030, 1231
BccI	CCATC	6 cut(s)	49, 59, 356, 951, 1236, 1428
BclI	TGATCA	1 cut(s)	1326
BcoDI	GTCTC	2 cut(s)	20, 1405
BfaI	CTAG	3 cut(s)	1166, 1235, 1320
BfmI	CTRYAG	2 cut(s)	559, 738
BisI	GCNGC	6 cut(s)	21, 824, 1041, 1044, 1197, 1220
BlsI	GCNGC	6 cut(s)	22, 825, 1042, 1045, 1198, 1221
Bme18I	GGWCC	2 cut(s)	665, 1103
BmgT120I	GGNCC	3 cut(s)	665, 696, 1103
BmiI	GGNNCC	4 cut(s)	611, 697, 1052, 1105
BmrI	ACTGGG	1 cut(s)	1257
BmsI	GCATC	4 cut(s)	121, 198, 252, 999
BmuI	ACTGGG	1 cut(s)	1257
BsaAI	YACGTR	2 cut(s)	808, 1202
BsaI	GGTCTC	1 cut(s)	1405
BsaJI	CCNNGG	2 cut(s)	634, 1226
BsaWI	WCCGGW	1 cut(s)	1390
Bsc4I	CCNNNNNNNGG	4 cut(s)	640, 1047, 1100, 1390
Bse118I	RCCGGY	1 cut(s)	1390
Bse1I	ACTGG	1 cut(s)	1252
Bse3DI	GCAATG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	634, 1226
BseGI	GGATG	7 cut(s)	70, 213, 939, 1014, 1155, 1190, 1420
BseLI	CCNNNNNNNGG	4 cut(s)	640, 1047, 1100, 1390
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	3 cut(s)	15, 228, 782
BseNI	ACTGG	1 cut(s)	1252
BseRI	GAGGAG	1 cut(s)	1398
BseXI	GCAGC	4 cut(s)	32, 810, 1030, 1231
BseYI	CCCAGC	2 cut(s)	202, 1159
BsgI	GTGCAG	2 cut(s)	394, 1039
BshFI	GGCC	3 cut(s)	698, 1359, 1446
BshNI	GGYRCC	1 cut(s)	609
BshTI	ACCGGT	1 cut(s)	1390
BsiSI	CCGG	1 cut(s)	1391
BslFI	GGGAC	1 cut(s)	1089
BslI	CCNNNNNNNGG	4 cut(s)	640, 1047, 1100, 1390
BsmAI	GTCTC	2 cut(s)	20, 1405
BsmFI	GGGAC	1 cut(s)	1089
BsmI	GAATGC	2 cut(s)	658, 1253
BsnI	GGCC	3 cut(s)	698, 1359, 1446
Bso31I	GGTCTC	1 cut(s)	1405
Bsp1407I	TGTACA	1 cut(s)	1336
Bsp143I	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	5 cut(s)	839, 1041, 1186, 1194, 1197
BspANI	GGCC	3 cut(s)	698, 1359, 1446
BspCNI	CTCAG	3 cut(s)	16, 227, 781
BspLI	GGNNCC	4 cut(s)	611, 697, 1052, 1105
BspPI	GGATC	3 cut(s)	436, 572, 1132
BspQI	GCTCTTC	1 cut(s)	897
BspT107I	GGYRCC	1 cut(s)	609
BspTNI	GGTCTC	1 cut(s)	1405
BsrBI	CCGCTC	1 cut(s)	1188
BsrDI	GCAATG	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	1390
BsrGI	TGTACA	1 cut(s)	1336
BsrI	ACTGG	1 cut(s)	1252
BssAI	RCCGGY	1 cut(s)	1390
BssECI	CCNNGG	2 cut(s)	634, 1226
BssMI	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
BssT1I	CCWWGG	2 cut(s)	634, 1226
Bst4CI	ACNGT	7 cut(s)	11, 31, 535, 739, 914, 1120, 1147
Bst6I	CTCTTC	3 cut(s)	897, 1134, 1367
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	1336
BstBAI	YACGTR	2 cut(s)	808, 1202
BstC8I	GCNNGC	5 cut(s)	457, 674, 753, 970, 974
BstDEI	CTNAG	5 cut(s)	24, 90, 214, 247, 768
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	7 cut(s)	70, 213, 939, 1014, 1155, 1190, 1420
BstKTI	GATC	5 cut(s)	431, 567, 1127, 1263, 1329
BstMAI	GTCTC	2 cut(s)	20, 1405
BstMBI	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 208, 376, 524, 823, 1380
BstNSI	RCATGY	5 cut(s)	106, 522, 731, 755, 1030
BstSFI	CTRYAG	2 cut(s)	559, 738
BstV1I	GCAGC	4 cut(s)	32, 810, 1030, 1231
BstX2I	RGATCY	3 cut(s)	428, 564, 1124
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	3 cut(s)	428, 564, 1124
BsuRI	GGCC	3 cut(s)	698, 1359, 1446
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	7 cut(s)	70, 213, 939, 1014, 1155, 1190, 1420
BtsI	GCAGTG	2 cut(s)	179, 600
BtsIMutI	CAGTG	4 cut(s)	179, 350, 600, 1143
Cac8I	GCNNGC	5 cut(s)	457, 674, 753, 970, 974
CaiI	CAGNNNCTG	1 cut(s)	567
Cfr10I	RCCGGY	1 cut(s)	1390
Cfr13I	GGNCC	3 cut(s)	665, 696, 1103
CseI	GACGC	2 cut(s)	822, 823
Csp6I	GTAC	2 cut(s)	610, 1337
CspAI	ACCGGT	1 cut(s)	1390
CviQI	GTAC	2 cut(s)	610, 1337
DdeI	CTNAG	5 cut(s)	24, 90, 214, 247, 768
DpnI	GATC	5 cut(s)	430, 566, 1126, 1262, 1328
DpnII	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
Eam1104I	CTCTTC	3 cut(s)	897, 1134, 1367
EarI	CTCTTC	3 cut(s)	897, 1134, 1367
EciI	GGCGGA	1 cut(s)	1183
Eco130I	CCWWGG	2 cut(s)	634, 1226
Eco31I	GGTCTC	1 cut(s)	1405
Eco47I	GGWCC	2 cut(s)	665, 1103
Eco57I	CTGAAG	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	1202
EcoT14I	CCWWGG	2 cut(s)	634, 1226
EcoT22I	ATGCAT	2 cut(s)	753, 1014
ErhI	CCWWGG	2 cut(s)	634, 1226
FaqI	GGGAC	1 cut(s)	1089
FbaI	TGATCA	1 cut(s)	1326
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	6 cut(s)	21, 824, 1041, 1044, 1197, 1220
FokI	GGATG	7 cut(s)	77, 220, 926, 1021, 1142, 1177, 1407
Fsp4HI	GCNGC	6 cut(s)	21, 824, 1041, 1044, 1197, 1220
FspBI	CTAG	3 cut(s)	1166, 1235, 1320
GluI	GCNGC	6 cut(s)	21, 824, 1041, 1044, 1197, 1220
GsaI	CCCAGC	2 cut(s)	206, 1163
HaeIII	GGCC	3 cut(s)	698, 1359, 1446
HapII	CCGG	1 cut(s)	1391
HgaI	GACGC	2 cut(s)	822, 823
HincII	GTYRAC	2 cut(s)	177, 322
HindII	GTYRAC	2 cut(s)	177, 322
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	4 cut(s)	220, 582, 904, 1299
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	1391
HphI	GGTGA	7 cut(s)	23, 607, 869, 946, 1171, 1357, 1395
Hpy166II	GTNNAC	6 cut(s)	177, 322, 725, 1034, 1150, 1339
Hpy188I	TCNGA	3 cut(s)	100, 329, 771
Hpy188III	TCNNGA	5 cut(s)	359, 485, 586, 663, 1258
Hpy8I	GTNNAC	6 cut(s)	177, 322, 725, 1034, 1150, 1339
HpyAV	CCTTC	9 cut(s)	55, 424, 428, 555, 559, 641, 837, 1192, 1279
HpyCH4III	ACNGT	7 cut(s)	11, 31, 535, 739, 914, 1120, 1147
HpyCH4IV	ACGT	2 cut(s)	807, 1201
HpyCH4V	TGCA	8 cut(s)	411, 527, 751, 797, 923, 972, 1012, 1020
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 208, 376, 524, 823, 1380
HpyF3I	CTNAG	5 cut(s)	24, 90, 214, 247, 768
HpySE526I	ACGT	2 cut(s)	807, 1201
KpnI	GGTACC	1 cut(s)	613
Ksp22I	TGATCA	1 cut(s)	1326
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	3 cut(s)	515, 1056, 1216
Lsp1109I	GCAGC	4 cut(s)	32, 810, 1030, 1231
LweI	GCATC	4 cut(s)	121, 198, 252, 999
MaeI	CTAG	3 cut(s)	1166, 1235, 1320
MaeII	ACGT	2 cut(s)	807, 1201
MaeIII	GTNAC	2 cut(s)	733, 914
MalI	GATC	5 cut(s)	430, 566, 1126, 1262, 1328
MbiI	CCGCTC	1 cut(s)	1188
MboI	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
MboII	GAAGA	4 cut(s)	884, 1121, 1168, 1354
MflI	RGATCY	3 cut(s)	428, 564, 1124
MluCI	AATT	1 cut(s)	1330
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	2 cut(s)	236, 1276
Mph1103I	ATGCAT	2 cut(s)	753, 1014
MseI	TTAA	3 cut(s)	321, 405, 1110
MslI	CAYNNNNRTG	1 cut(s)	1277
MspA1I	CMGCKG	4 cut(s)	23, 144, 202, 1043
MspI	CCGG	1 cut(s)	1391
Mva1269I	GAATGC	2 cut(s)	658, 1253
MwoI	GCNNNNNNNGC	6 cut(s)	131, 208, 376, 524, 823, 1380
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
NlaIV	GGNNCC	4 cut(s)	611, 697, 1052, 1105
NmuCI	GTSAC	1 cut(s)	914
NsiI	ATGCAT	2 cut(s)	753, 1014
NspI	RCATGY	5 cut(s)	106, 522, 731, 755, 1030
PaeI	GCATGC	1 cut(s)	755
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	897
PctI	GAATGC	2 cut(s)	658, 1253
PfeI	GAWTC	3 cut(s)	220, 904, 1299
PinAI	ACCGGT	1 cut(s)	1390
PkrI	GCNGC	6 cut(s)	22, 825, 1042, 1045, 1198, 1221
PleI	GAGTC	1 cut(s)	576
PmaCI	CACGTG	1 cut(s)	1202
PmlI	CACGTG	1 cut(s)	1202
PpsI	GAGTC	1 cut(s)	576
Ppu21I	YACGTR	2 cut(s)	808, 1202
PscI	ACATGT	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	1202
PspFI	CCCAGC	2 cut(s)	202, 1159
PspN4I	GGNNCC	4 cut(s)	611, 697, 1052, 1105
PspPI	GGNCC	3 cut(s)	665, 696, 1103
PstNI	CAGNNNCTG	1 cut(s)	567
PsuI	RGATCY	3 cut(s)	428, 564, 1124
PvuII	CAGCTG	3 cut(s)	23, 144, 202
RsaI	GTAC	2 cut(s)	611, 1338
RsaNI	GTAC	2 cut(s)	610, 1337
RseI	CAYNNNNRTG	1 cut(s)	1277
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	3 cut(s)	321, 405, 1110
SatI	GCNGC	6 cut(s)	21, 824, 1041, 1044, 1197, 1220
Sau3AI	GATC	5 cut(s)	428, 564, 1124, 1260, 1326
Sau96I	GGNCC	3 cut(s)	665, 696, 1103
SchI	GAGTC	1 cut(s)	576
SfaNI	GCATC	4 cut(s)	121, 198, 252, 999
SfcI	CTRYAG	2 cut(s)	559, 738
SinI	GGWCC	2 cut(s)	665, 1103
SmiMI	CAYNNNNRTG	1 cut(s)	1277
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	1 cut(s)	1330
SsiI	CCGC	5 cut(s)	839, 1041, 1186, 1194, 1197
SspMI	CTAG	3 cut(s)	1166, 1235, 1320
StyI	CCWWGG	2 cut(s)	634, 1226
TaaI	ACNGT	7 cut(s)	11, 31, 535, 739, 914, 1120, 1147
TaiI	ACGT	2 cut(s)	810, 1204
TasI	AATT	1 cut(s)	1330
TatI	WGTACW	1 cut(s)	1336
TauI	GCSGC	2 cut(s)	1043, 1199
TfiI	GAWTC	3 cut(s)	220, 904, 1299
Tru1I	TTAA	3 cut(s)	321, 405, 1110
Tru9I	TTAA	3 cut(s)	321, 405, 1110
TscAI	CASTG	4 cut(s)	186, 350, 607, 1150
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	4 cut(s)	20, 823, 1043, 1219
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	3 cut(s)	940, 1261, 1279
TspRI	CASTG	4 cut(s)	186, 350, 607, 1150
VpaK11BI	GGWCC	2 cut(s)	665, 1103
XceI	RCATGY	5 cut(s)	106, 522, 731, 755, 1030
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	3 cut(s)	1166, 1235, 1320
Zsp2I	ATGCAT	2 cut(s)	753, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.