Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Forward (+)

1422805 .. 1427224

Gene Structure 4420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGAATCTTCAGACAAGGTGGTGGAGACTGTGATAGTAGGAAACTATGTAGAAATGGAGGCTGATGGGAAAGGCAAGGATCTCAAGTCCAAGCTTTCCAAGTTCTTCTGGGATGGTGGCTCTACTTATGATGCTTGGTTCAGCTGTGCTTCTAATCAGGTGGCTCAAGTCCTGCTTACTCTGCCATACTCATTTTCACAGCTGGGAATGCTTTCAGGGATACTCTTCCAGCTCTTCTATGGCTTGTTGGGTAGCTGGACTGCTTATCTCATTAGTGTGCTCTATGTTGAATACAGAACCAGAAAAGAAAGAGAAAAAGTTGATTTCAGAAACCATGTCATTCAGTGGTTTGAAGTTCTTGATGGGCTGCTTGGGAAGCACTGGAGGAACGTGGGGTTGGCATTCAACTGCACATTTCTTCTGTTTGGATCTGTAATTCAGCTCATTGCTTGTGCAAGCAACATATATTACATAAATGACAATATGGACAAGAGGACTTGGACTTACATCTTCGGAGCTTGTTGTGCCACCACCGTCTTTATTCCTTCTTTTCACAACTACAGAATCTGGTCCTTTTTGGGACTAGTAATGACCACCTACACTGCTTGGTACCTCACCATTGCTTCAATCCTCCATGGTCAGGTTGAGGGAGTGAAGCACTCTGGTCCAACTAAGCTGGTGCTATACTTCACAGGTGCCACAAACATTCTCTACACTTTTGGGGGACATGCTGTTACTGTAGAGATCATGCACGCAATGTGGAAGCCTCAGAAGTTCAAGGCCATATATTTACTGGCAACCATCTATGTGCTGACACTGACCCTTCCTTCTGCATCAGCTGTATACTGGGCATTTGGAGACTTGCTTCTTAATCACTCCAATGCCTTTGCTCTCCTCCCCAAATCTCCCTTCAGAGACATGGCAGTCATTTTAATGCTCATCCACCAGTTTATAACATTTGGGTTTGCATGCACACCACTATACTTTGTGTGGGAGAAAGCCATTGGCATGCATGATTGCAAGAGCTTATGCAAGAGAGCAGCAGCAAGATTGCCAGTGGTGATCCCCATTTGGTTCTTGGCCATCATCTTCCCATTTTTTGGACCAATAAACTCCACAGTTGGATCACTTCTGGTTAGCTTCACAGTCTACATCATCCCATCTTTGGCCCACATTTTCACCTACAGATCAGCTGCTGCTAGAGAGAATGCAGTGGAACGGCCACCGAGATTTCTAGGAGGGTGGATCGGGTCGTACACGATCAATGTGTTTGTGGTGGTGTGGGTGTTCGTGGTTGGGTTTGGATTTGGTGGGTGGGCGAGCATTACAAACTTTGTGCGCCAGATTGACACATTTGGGCTGTTCACAAAGTGTTACCAGTGTCCTCCTCAAGCAGCACCAATGGTCTTCAACGCTACTGCTCATGCAGCTCCTCCTCCTCTCCACCACCCCCTCCTCAACCACACTCACCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

493

Amino Acids

55.44

Weight (kDa)

8.93

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 429	1.1e-80	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
AasI	GACNNNNNNGTC	1 cut(s)	923
Acc65I	GGTACC	1 cut(s)	609
AccB1I	GGYRCC	2 cut(s)	609, 695
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AccI	GTMKAC	2 cut(s)	843, 1149
AclWI	GGATC	5 cut(s)	87, 436, 1057, 1132, 1253
AcoI	YGGCCR	2 cut(s)	1080, 1220
AcuI	CTGAAG	1 cut(s)	895
AdeI	CACNNNGTG	1 cut(s)	1371
AfaI	GTAC	2 cut(s)	611, 1256
AfiI	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
AgsI	TTSAA	6 cut(s)	290, 353, 406, 627, 778, 1411
AhlI	ACTAGT	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 893, 925
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	3 cut(s)	20, 852, 909
AlwI	GGATC	5 cut(s)	87, 436, 1057, 1132, 1253
AlwNI	CAGNNNCTG	2 cut(s)	567, 1196
AoxI	GGCC	4 cut(s)	780, 1080, 1167, 1220
ApeKI	GCWGC	7 cut(s)	367, 1040, 1043, 1193, 1196, 1394, 1427
Asp700I	GAANNNNTTC	1 cut(s)	211
Asp718I	GGTACC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	1341
AspS9I	GGNCC	4 cut(s)	570, 665, 1103, 1168
AsuHPI	GGTGA	4 cut(s)	607, 1072, 1171, 1460
AvaII	GGWCC	3 cut(s)	570, 665, 1103
BalI	TGGCCA	1 cut(s)	1082
BanI	GGYRCC	2 cut(s)	609, 695
BbsI	GAAGAC	1 cut(s)	1399
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	7 cut(s)	354, 1052, 1055, 1180, 1183, 1406, 1439
BccI	CCATC	6 cut(s)	59, 107, 356, 809, 1091, 1168
BceAI	ACGGC	1 cut(s)	1235
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	20, 852, 909
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	3 cut(s)	584, 1200, 1235
BfmI	CTRYAG	3 cut(s)	559, 738, 1183
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	7 cut(s)	368, 1041, 1044, 1194, 1197, 1395, 1428
BlsI	GCNGC	7 cut(s)	369, 1042, 1045, 1195, 1198, 1396, 1429
Bme18I	GGWCC	3 cut(s)	570, 665, 1103
BmgT120I	GGNCC	4 cut(s)	570, 665, 1103, 1168
BmiI	GGNNCC	2 cut(s)	611, 697
BmrI	ACTGGG	1 cut(s)	856
BmsI	GCATC	2 cut(s)	121, 842
BmuI	ACTGGG	1 cut(s)	856
BpiI	GAAGAC	1 cut(s)	1399
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	3 cut(s)	68, 150, 1374
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
Bse1I	ACTGG	6 cut(s)	386, 798, 851, 946, 1055, 1378
Bse3DI	GCAATG	3 cut(s)	444, 618, 762
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	3 cut(s)	118, 939, 1155
BseLI	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
BseMI	GCAATG	3 cut(s)	444, 618, 762
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	6 cut(s)	386, 798, 851, 946, 1055, 1378
BseRI	GAGGAG	6 cut(s)	884, 1377, 1422, 1425, 1428, 1445
BseXI	GCAGC	7 cut(s)	354, 1052, 1055, 1180, 1183, 1406, 1439
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	4 cut(s)	782, 1082, 1169, 1222
BshNI	GGYRCC	2 cut(s)	609, 695
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	594, 738
BslI	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
BsmAI	GTCTC	3 cut(s)	20, 852, 909
BsmFI	GGGAC	2 cut(s)	594, 738
BsmI	GAATGC	3 cut(s)	213, 401, 1213
BsnI	GGCC	4 cut(s)	782, 1082, 1169, 1222
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
Bsp19I	CCATGG	1 cut(s)	634
BspANI	GGCC	4 cut(s)	782, 1082, 1169, 1222
BspCNI	CTCAG	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	611, 697
BspPI	GGATC	5 cut(s)	87, 436, 1057, 1132, 1253
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	2 cut(s)	609, 695
BsrDI	GCAATG	3 cut(s)	444, 618, 762
BsrI	ACTGG	6 cut(s)	386, 798, 851, 946, 1055, 1378
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
BssNAI	GTATAC	1 cut(s)	844
BssT1I	CCWWGG	1 cut(s)	634
Bst1107I	GTATAC	1 cut(s)	844
Bst4CI	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
Bst6I	CTCTTC	2 cut(s)	230, 239
BstC8I	GCNNGC	5 cut(s)	457, 753, 970, 1010, 1321
BstDEI	CTNAG	2 cut(s)	672, 768
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	3 cut(s)	118, 939, 1155
BstHHI	GCGC	1 cut(s)	1341
BstKTI	GATC	8 cut(s)	82, 431, 747, 1065, 1127, 1190, 1248, 1263
BstMAI	GTCTC	3 cut(s)	20, 852, 909
BstMBI	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 208, 376, 524, 1427
BstNSI	RCATGY	3 cut(s)	731, 972, 1012
BstSFI	CTRYAG	3 cut(s)	559, 738, 1183
BstV1I	GCAGC	7 cut(s)	354, 1052, 1055, 1180, 1183, 1406, 1439
BstV2I	GAAGAC	1 cut(s)	1399
BstX2I	RGATCY	2 cut(s)	79, 428
BstYI	RGATCY	2 cut(s)	79, 428
BstZ17I	GTATAC	1 cut(s)	844
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	4 cut(s)	782, 1082, 1169, 1222
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	118, 939, 1155
BtsI	GCAGTG	2 cut(s)	600, 1218
BtsIMutI	CAGTG	7 cut(s)	350, 379, 600, 815, 1062, 1218, 1385
Cac8I	GCNNGC	5 cut(s)	457, 753, 970, 1010, 1321
CaiI	CAGNNNCTG	2 cut(s)	567, 1196
CfoI	GCGC	1 cut(s)	1341
Cfr13I	GGNCC	4 cut(s)	570, 665, 1103, 1168
Csp6I	GTAC	2 cut(s)	610, 1255
CviAII	CATG	9 cut(s)	335, 635, 728, 748, 919, 969, 1009, 1013, 1424
CviQI	GTAC	2 cut(s)	610, 1255
DdeI	CTNAG	2 cut(s)	672, 768
DpnI	GATC	8 cut(s)	81, 430, 746, 1064, 1126, 1189, 1247, 1262
DpnII	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
DraIII	CACNNNGTG	1 cut(s)	1371
DrdI	GACNNNNNNGTC	1 cut(s)	923
DseDI	GACNNNNNNGTC	1 cut(s)	923
EaeI	YGGCCR	2 cut(s)	1080, 1220
Eam1104I	CTCTTC	2 cut(s)	230, 239
EarI	CTCTTC	2 cut(s)	230, 239
Eco130I	CCWWGG	1 cut(s)	634
Eco47I	GGWCC	3 cut(s)	570, 665, 1103
Eco57I	CTGAAG	1 cut(s)	895
EcoT14I	CCWWGG	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	9 cut(s)	338, 638, 731, 751, 922, 972, 1012, 1016, 1427
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	2 cut(s)	594, 738
FatI	CATG	9 cut(s)	334, 634, 727, 747, 918, 968, 1008, 1012, 1423
FblI	GTMKAC	2 cut(s)	843, 1149
Fnu4HI	GCNGC	7 cut(s)	368, 1041, 1044, 1194, 1197, 1395, 1428
FokI	GGATG	3 cut(s)	125, 926, 1142
Fsp4HI	GCNGC	7 cut(s)	368, 1041, 1044, 1194, 1197, 1395, 1428
FspBI	CTAG	3 cut(s)	584, 1200, 1235
GlaI	GCGC	1 cut(s)	1340
GluI	GCNGC	7 cut(s)	368, 1041, 1044, 1194, 1197, 1395, 1428
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	4 cut(s)	782, 1082, 1169, 1222
HhaI	GCGC	1 cut(s)	1341
Hin1II	CATG	9 cut(s)	338, 638, 731, 751, 922, 972, 1012, 1016, 1427
Hin6I	GCGC	1 cut(s)	1339
HinP1I	GCGC	1 cut(s)	1339
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	5, 564
HphI	GGTGA	4 cut(s)	607, 1072, 1171, 1460
Hpy166II	GTNNAC	4 cut(s)	844, 1150, 1257, 1365
Hpy188I	TCNGA	5 cut(s)	13, 329, 515, 771, 914
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	4 cut(s)	844, 1150, 1257, 1365
HpyAV	CCTTC	4 cut(s)	555, 833, 837, 919
HpyCH4III	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
HpyCH4IV	ACGT	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 208, 376, 524, 1427
HpyF3I	CTNAG	2 cut(s)	672, 768
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	9 cut(s)	338, 638, 731, 751, 922, 972, 1012, 1016, 1427
HspAI	GCGC	1 cut(s)	1339
KpnI	GGTACC	1 cut(s)	613
Kzo9I	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	2 cut(s)	515, 1435
Lsp1109I	GCAGC	7 cut(s)	354, 1052, 1055, 1180, 1183, 1406, 1439
LweI	GCATC	2 cut(s)	121, 842
MaeI	CTAG	3 cut(s)	584, 1200, 1235
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	733, 1373
MalI	GATC	8 cut(s)	81, 430, 746, 1064, 1126, 1189, 1247, 1262
MboI	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
MboII	GAAGA	7 cut(s)	97, 217, 226, 410, 502, 1081, 1399
MflI	RGATCY	2 cut(s)	79, 428
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	1082
MluCI	AATT	1 cut(s)	435
MluNI	TGGCCA	1 cut(s)	1082
MmeI	TCCRAC	2 cut(s)	692, 1102
Mox20I	TGGCCA	1 cut(s)	1082
Mph1103I	ATGCAT	1 cut(s)	1014
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	1082
MseI	TTAA	2 cut(s)	870, 932
MslI	CAYNNNNRTG	5 cut(s)	275, 806, 879, 932, 1007
Msp20I	TGGCCA	1 cut(s)	1082
MspA1I	CMGCKG	4 cut(s)	144, 202, 839, 1193
Mva1269I	GAATGC	3 cut(s)	213, 401, 1213
MwoI	GCNNNNNNNGC	5 cut(s)	181, 208, 376, 524, 1427
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
NlaIII	CATG	9 cut(s)	338, 638, 731, 751, 922, 972, 1012, 1016, 1427
NlaIV	GGNNCC	2 cut(s)	611, 697
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	3 cut(s)	731, 972, 1012
PaeI	GCATGC	2 cut(s)	972, 1012
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	3 cut(s)	213, 401, 1213
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	5, 564
PflMI	CCANNNNNTGG	1 cut(s)	1100
PkrI	GCNGC	7 cut(s)	369, 1042, 1045, 1195, 1198, 1396, 1429
PsiI	TTATAA	1 cut(s)	953
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	611, 697
PspPI	GGNCC	4 cut(s)	570, 665, 1103, 1168
PstNI	CAGNNNCTG	2 cut(s)	567, 1196
PsuI	RGATCY	2 cut(s)	79, 428
PvuII	CAGCTG	4 cut(s)	144, 202, 839, 1193
RsaI	GTAC	2 cut(s)	611, 1256
RsaNI	GTAC	2 cut(s)	610, 1255
RseI	CAYNNNNRTG	5 cut(s)	275, 806, 879, 932, 1007
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	870, 932
SatI	GCNGC	7 cut(s)	368, 1041, 1044, 1194, 1197, 1395, 1428
Sau3AI	GATC	8 cut(s)	79, 428, 744, 1062, 1124, 1187, 1245, 1260
Sau96I	GGNCC	4 cut(s)	570, 665, 1103, 1168
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	121, 842
SfcI	CTRYAG	3 cut(s)	559, 738, 1183
SinI	GGWCC	3 cut(s)	570, 665, 1103
SmiMI	CAYNNNNRTG	5 cut(s)	275, 806, 879, 932, 1007
SmlI	CTYRAG	3 cut(s)	83, 165, 1389
SmoI	CTYRAG	3 cut(s)	83, 165, 1389
SpeI	ACTAGT	1 cut(s)	583
SphI	GCATGC	2 cut(s)	972, 1012
Sse9I	AATT	1 cut(s)	435
SspMI	CTAG	3 cut(s)	584, 1200, 1235
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
TaiI	ACGT	1 cut(s)	393
TasI	AATT	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	5, 564
Tru1I	TTAA	2 cut(s)	870, 932
Tru9I	TTAA	2 cut(s)	870, 932
TscAI	CASTG	7 cut(s)	350, 386, 607, 822, 1062, 1218, 1385
TseI	GCWGC	7 cut(s)	367, 1040, 1043, 1193, 1196, 1394, 1427
TspRI	CASTG	7 cut(s)	350, 386, 607, 822, 1062, 1218, 1385
Van91I	CCANNNNNTGG	1 cut(s)	1100
VpaK11BI	GGWCC	3 cut(s)	570, 665, 1103
XceI	RCATGY	3 cut(s)	731, 972, 1012
XcmI	CCANNNNNNNNNTGG	3 cut(s)	236, 790, 1075
XmiI	GTMKAC	2 cut(s)	843, 1149
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	3 cut(s)	584, 1200, 1235
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.