Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Reverse (-)

23979378 .. 23984037

Gene Structure 4660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1118600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGAGTCATCAGATAAGGTGGTGGAAACAGTGATAGTAGGAAATTATGTAGAAATGGAGGCAGATGGGAAGGCCAAGAGCTTCAAGAGCAAGCTCTCCAAGTTCTTCTGGGATGGTGGGTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCTAATCAGGTGGCTCAAGTTCTGCTTACTTTGCCGTACTCGTTCTCGCAGCTGGGAATGCTCTCTGGGATTCTCTTCCAGCTTTTCTATGGCTTGCTGGGCAGCTGGACTGCTTACCTTATTAGCACACTCTATATTGAATACAGAACAAGAAAAGAAAGAGAAAAGGTTGATTTCAGAAACCATGTCATCCAGTGGTTTGAAGTTCTTGATGGGCTGCTTGGGAAACACTGGAGGAACGTGGGGTTGGCATTTAACTGCACATTTCTTCTGTTTGGATCTGTCATTCAGCTGATAGCTTGTGCAAGTAATATATATTACATAAATGATAATCTGGACAAGAGGACTTGGACTTACATCTTCGGAGCTTGCTGTGCCACCACTGTCTTTATCCCTTCATTTCACAACTACAGAGTTTGGTCATTTTTGGGCCTTGTTATGACCACTTACACTGCTTGGTACCTTACCATTGCCTCCTTCCTCCATGGCCAGGTTGAGGGAGTGAAGCACTCTGGTCCGACTAAGGTGGTGCTATACTTCACTGGGGCCACAAACATTCTCTACACTTTTGGAGGACATGCTGTTACTGTGGAGATCATGCATGCGATGTGGAAACCTCAGAAGTTCAAGGCCATATATTTATTTGCTACCCTGTATGTGCTGACATTGACCCTTCCCTCTGCATCAGCAGTGTATTGGGCATTTGGAGACTTGCTTCTTAACCACTCCAACGCTTTCTCTCTCCTCCCTAAATCTCCCTTCAGAGACATGGCTGTCATTTTAATGCTCATCCACCAGTTTATAACATTTGGGTTTGCATGCACACCACTATACTTTGTGTGGGAGAAAGCCATAGGCATGCATGAATGTAAAAGCTTGTGCAAGAGAGCAGCAGCAAGACTGCCTGTGGTGATCCCAATCTGGTTCTTGGCCATCATCTTCCCATTCTTTGGACCTATCAACTCCACCGTTGGATCACTCCTAGTCAGCTTCACAGTCTACATCATCCCAGCTCTGGCCCATATTTTCACTTACAGATCAGCTGCTGCAAGAGAGAATGCTGTGGAGAGTCCCCCAAGGTTCCTAGGAGGATGGATAGGATCATACACAATCAATGTGTTTGTGGTGGTGTGGGTGTTTGTAGTTGGATTTGGATTCGGTGGGTGGGCGAGCATTACGAACTTTGTACACCAGATCGACACATTTGGCCTCTTCACCAAGTGTTACCAATGCCCTCTGCCGCCGCCGCCCACGATCTTCAACACAACCTCAGCTCCTCCTCCTCTCCACCACCTTCTGCCTCGTAATCACTCCCATACCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

492

Amino Acids

55.35

Weight (kDa)

8.93

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 429	6.6e-79	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
AasI	GACNNNNNNGTC	1 cut(s)	923
Acc65I	GGTACC	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	609
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AccI	GTMKAC	1 cut(s)	1149
AciI	CCGC	3 cut(s)	1391, 1394, 1397
AclWI	GGATC	4 cut(s)	436, 1057, 1132, 1258
AcoI	YGGCCR	2 cut(s)	637, 1080
AcuI	CTGAAG	1 cut(s)	895
AdeI	CACNNNGTG	1 cut(s)	1371
AfaI	GTAC	3 cut(s)	188, 611, 1338
AfiI	CCNNNNNNNGG	4 cut(s)	640, 646, 1100, 1165
AgsI	TTSAA	5 cut(s)	85, 290, 353, 778, 1411
AjnI	CCWGG	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
Alw26I	GTCTC	2 cut(s)	852, 909
AlwI	GGATC	4 cut(s)	436, 1057, 1132, 1258
AlwNI	CAGNNNCTG	1 cut(s)	1196
AoxI	GGCC	8 cut(s)	72, 580, 637, 696, 780, 1080, 1167, 1357
ApeKI	GCWGC	7 cut(s)	199, 252, 367, 1040, 1043, 1193, 1196
Asp718I	GGTACC	1 cut(s)	609
AspA2I	CCTAGG	1 cut(s)	1234
AspS9I	GGNCC	5 cut(s)	580, 665, 696, 1103, 1168
AsuHPI	GGTGA	2 cut(s)	1072, 1357
AvaII	GGWCC	2 cut(s)	665, 1103
AvrII	CCTAGG	1 cut(s)	1234
BalI	TGGCCA	2 cut(s)	639, 1082
BanI	GGYRCC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	1420
BbvI	GCAGC	7 cut(s)	211, 264, 354, 1052, 1055, 1180, 1183
BccI	CCATC	5 cut(s)	59, 107, 356, 1091, 1236
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	641
BcoDI	GTCTC	2 cut(s)	852, 909
BfaI	CTAG	2 cut(s)	1133, 1235
BfmI	CTRYAG	1 cut(s)	559
BlnI	CCTAGG	1 cut(s)	1234
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	2 cut(s)	665, 1103
BmgT120I	GGNCC	5 cut(s)	580, 665, 696, 1103, 1168
BmiI	GGNNCC	3 cut(s)	611, 697, 1232
BmrFI	CCNGG	1 cut(s)	641
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	2 cut(s)	121, 842
BmuI	ACTGGG	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	1420
BpuEI	CTTGAG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	1067
BsaJI	CCNNGG	3 cut(s)	634, 1226, 1234
BsaXI	ACNNNNNCTCC	2 cut(s)	1408, 1438
Bsc4I	CCNNNNNNNGG	4 cut(s)	640, 646, 1100, 1165
Bse1I	ACTGG	4 cut(s)	343, 386, 697, 946
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	1067
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	3 cut(s)	634, 1226, 1234
BseGI	GGATG	5 cut(s)	118, 339, 939, 1155, 1247
BseJI	GATNNNNATC	1 cut(s)	1067
BseLI	CCNNNNNNNGG	4 cut(s)	640, 646, 1100, 1165
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	782, 1434
BseNI	ACTGG	4 cut(s)	343, 386, 697, 946
BseRI	GAGGAG	4 cut(s)	884, 1416, 1419, 1422
BseXI	GCAGC	7 cut(s)	211, 264, 354, 1052, 1055, 1180, 1183
BseYI	CCCAGC	3 cut(s)	202, 247, 1159
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	8 cut(s)	74, 582, 639, 698, 782, 1082, 1169, 1359
BshNI	GGYRCC	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	1206
BslI	CCNNNNNNNGG	4 cut(s)	640, 646, 1100, 1165
BsmAI	GTCTC	2 cut(s)	852, 909
BsmFI	GGGAC	1 cut(s)	1206
BsmI	GAATGC	2 cut(s)	213, 1213
BsnI	GGCC	8 cut(s)	74, 582, 639, 698, 782, 1082, 1169, 1359
Bsp1407I	TGTACA	1 cut(s)	1336
Bsp143I	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	3 cut(s)	1391, 1394, 1397
BspANI	GGCC	8 cut(s)	74, 582, 639, 698, 782, 1082, 1169, 1359
BspCNI	CTCAG	2 cut(s)	781, 1433
BspLI	GGNNCC	3 cut(s)	611, 697, 1232
BspPI	GGATC	4 cut(s)	436, 1057, 1132, 1258
BspT107I	GGYRCC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	618
BsrGI	TGTACA	1 cut(s)	1336
BsrI	ACTGG	4 cut(s)	343, 386, 697, 946
BssECI	CCNNGG	3 cut(s)	634, 1226, 1234
BssMI	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
BssT1I	CCWWGG	3 cut(s)	634, 1226, 1234
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
Bst6I	CTCTTC	2 cut(s)	230, 1367
BstAUI	TGTACA	1 cut(s)	1336
BstC8I	GCNNGC	7 cut(s)	92, 245, 520, 753, 970, 1010, 1321
BstDEI	CTNAG	3 cut(s)	672, 768, 1420
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	5 cut(s)	118, 339, 939, 1155, 1247
BstKTI	GATC	8 cut(s)	431, 747, 1065, 1127, 1190, 1253, 1347, 1407
BstMAI	GTCTC	2 cut(s)	852, 909
BstMBI	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 131, 181, 208, 249, 524, 1396
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	4 cut(s)	731, 755, 972, 1012
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	7 cut(s)	211, 264, 354, 1052, 1055, 1180, 1183
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	8 cut(s)	74, 582, 639, 698, 782, 1082, 1169, 1359
BtgI	CCRYGG	1 cut(s)	634
BtgZI	GCGATG	1 cut(s)	770
BtsCI	GGATG	5 cut(s)	118, 339, 939, 1155, 1247
BtsI	GCAGTG	2 cut(s)	600, 846
BtsIMutI	CAGTG	7 cut(s)	36, 350, 379, 531, 600, 690, 846
Cac8I	GCNNGC	7 cut(s)	92, 245, 520, 753, 970, 1010, 1321
CaiI	CAGNNNCTG	1 cut(s)	1196
Cfr13I	GGNCC	5 cut(s)	580, 665, 696, 1103, 1168
Csp6I	GTAC	3 cut(s)	187, 610, 1337
CviAII	CATG	9 cut(s)	335, 635, 728, 748, 752, 919, 969, 1009, 1013
CviQI	GTAC	3 cut(s)	187, 610, 1337
DdeI	CTNAG	3 cut(s)	672, 768, 1420
DpnI	GATC	8 cut(s)	430, 746, 1064, 1126, 1189, 1252, 1346, 1406
DpnII	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
DraIII	CACNNNGTG	1 cut(s)	1371
DrdI	GACNNNNNNGTC	1 cut(s)	923
DseDI	GACNNNNNNGTC	1 cut(s)	923
EaeI	YGGCCR	2 cut(s)	637, 1080
Eam1104I	CTCTTC	2 cut(s)	230, 1367
EarI	CTCTTC	2 cut(s)	230, 1367
Eco130I	CCWWGG	3 cut(s)	634, 1226, 1234
Eco47I	GGWCC	2 cut(s)	665, 1103
Eco57I	CTGAAG	1 cut(s)	895
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	3 cut(s)	634, 1226, 1234
EcoT22I	ATGCAT	2 cut(s)	753, 1014
ErhI	CCWWGG	3 cut(s)	634, 1226, 1234
FaeI	CATG	9 cut(s)	338, 638, 731, 751, 755, 922, 972, 1012, 1016
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	1206
FatI	CATG	9 cut(s)	334, 634, 727, 747, 751, 918, 968, 1008, 1012
FblI	GTMKAC	1 cut(s)	1149
FokI	GGATG	5 cut(s)	125, 326, 926, 1142, 1254
FspBI	CTAG	2 cut(s)	1133, 1235
GsaI	CCCAGC	3 cut(s)	206, 251, 1163
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	8 cut(s)	74, 582, 639, 698, 782, 1082, 1169, 1359
Hin1II	CATG	9 cut(s)	338, 638, 731, 751, 755, 922, 972, 1012, 1016
HindIII	AAGCTT	1 cut(s)	1024
HinfI	GANTC	4 cut(s)	5, 220, 1219, 1305
HphI	GGTGA	2 cut(s)	1072, 1357
Hpy166II	GTNNAC	2 cut(s)	1150, 1339
Hpy188I	TCNGA	6 cut(s)	13, 329, 515, 669, 771, 914
Hpy188III	TCNNGA	3 cut(s)	85, 359, 485
Hpy8I	GTNNAC	2 cut(s)	1150, 1339
HpyAV	CCTTC	6 cut(s)	64, 555, 637, 833, 919, 1454
HpyCH4III	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	9 cut(s)	411, 455, 751, 833, 968, 972, 1012, 1032, 1199
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 131, 181, 208, 249, 524, 1396
HpyF3I	CTNAG	3 cut(s)	672, 768, 1420
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	9 cut(s)	338, 638, 731, 751, 755, 922, 972, 1012, 1016
KpnI	GGTACC	1 cut(s)	613
Kzo9I	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
LmnI	GCTCC	2 cut(s)	515, 1429
Lsp1109I	GCAGC	7 cut(s)	211, 264, 354, 1052, 1055, 1180, 1183
LweI	GCATC	2 cut(s)	121, 842
MaeI	CTAG	2 cut(s)	1133, 1235
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	733, 1373
MalI	GATC	8 cut(s)	430, 746, 1064, 1126, 1189, 1252, 1346, 1406
MboI	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
MboII	GAAGA	7 cut(s)	97, 217, 410, 502, 1081, 1354, 1399
MflI	RGATCY	1 cut(s)	428
MlsI	TGGCCA	2 cut(s)	639, 1082
MluCI	AATT	1 cut(s)	43
MluNI	TGGCCA	2 cut(s)	639, 1082
MlyI	GAGTC	2 cut(s)	14, 1228
MmeI	TCCRAC	4 cut(s)	692, 903, 1102, 1276
Mox20I	TGGCCA	2 cut(s)	639, 1082
Mph1103I	ATGCAT	2 cut(s)	753, 1014
MscI	TGGCCA	2 cut(s)	639, 1082
MseI	TTAA	4 cut(s)	405, 870, 932, 1474
MslI	CAYNNNNRTG	2 cut(s)	932, 1007
Msp20I	TGGCCA	2 cut(s)	639, 1082
MspA1I	CMGCKG	5 cut(s)	144, 202, 255, 442, 1193
MspR9I	CCNGG	1 cut(s)	641
Mva1269I	GAATGC	2 cut(s)	213, 1213
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	7 cut(s)	87, 131, 181, 208, 249, 524, 1396
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
NlaIII	CATG	9 cut(s)	338, 638, 731, 751, 755, 922, 972, 1012, 1016
NlaIV	GGNNCC	3 cut(s)	611, 697, 1232
NsiI	ATGCAT	2 cut(s)	753, 1014
NspI	RCATGY	4 cut(s)	731, 755, 972, 1012
PaeI	GCATGC	3 cut(s)	755, 972, 1012
PctI	GAATGC	2 cut(s)	213, 1213
PfeI	GAWTC	2 cut(s)	220, 1305
PflMI	CCANNNNNTGG	1 cut(s)	1100
PleI	GAGTC	2 cut(s)	13, 1227
PpsI	GAGTC	2 cut(s)	13, 1227
PsiI	TTATAA	1 cut(s)	953
Psp6I	CCWGG	1 cut(s)	639
PspFI	CCCAGC	3 cut(s)	202, 247, 1159
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	3 cut(s)	611, 697, 1232
PspPI	GGNCC	5 cut(s)	580, 665, 696, 1103, 1168
PstNI	CAGNNNCTG	1 cut(s)	1196
PsuI	RGATCY	1 cut(s)	428
PvuII	CAGCTG	5 cut(s)	144, 202, 255, 442, 1193
RsaI	GTAC	3 cut(s)	188, 611, 1338
RsaNI	GTAC	3 cut(s)	187, 610, 1337
RseI	CAYNNNNRTG	2 cut(s)	932, 1007
SaqAI	TTAA	4 cut(s)	405, 870, 932, 1474
Sau3AI	GATC	8 cut(s)	428, 744, 1062, 1124, 1187, 1250, 1344, 1404
Sau96I	GGNCC	5 cut(s)	580, 665, 696, 1103, 1168
SchI	GAGTC	2 cut(s)	14, 1228
ScrFI	CCNGG	1 cut(s)	641
SfaNI	GCATC	2 cut(s)	121, 842
SfcI	CTRYAG	1 cut(s)	559
SinI	GGWCC	2 cut(s)	665, 1103
SmiMI	CAYNNNNRTG	2 cut(s)	932, 1007
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	3 cut(s)	755, 972, 1012
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	1391, 1394, 1397
SspMI	CTAG	2 cut(s)	1133, 1235
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	3 cut(s)	634, 1226, 1234
TaaI	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	1347
TasI	AATT	1 cut(s)	43
TatI	WGTACW	1 cut(s)	1336
TauI	GCSGC	3 cut(s)	1393, 1396, 1399
TfiI	GAWTC	2 cut(s)	220, 1305
Tru1I	TTAA	4 cut(s)	405, 870, 932, 1474
Tru9I	TTAA	4 cut(s)	405, 870, 932, 1474
TscAI	CASTG	7 cut(s)	36, 350, 386, 538, 607, 697, 846
TseI	GCWGC	7 cut(s)	199, 252, 367, 1040, 1043, 1193, 1196
TspDTI	ATGAA	2 cut(s)	537, 1029
TspRI	CASTG	7 cut(s)	36, 350, 386, 538, 607, 697, 846
Van91I	CCANNNNNTGG	1 cut(s)	1100
VpaK11BI	GGWCC	2 cut(s)	665, 1103
XceI	RCATGY	4 cut(s)	731, 755, 972, 1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmaJI	CCTAGG	1 cut(s)	1234
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	2 cut(s)	1133, 1235
Zsp2I	ATGCAT	2 cut(s)	753, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.