Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Reverse (-)

13763474 .. 13766755

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10470.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTTGTTGTTAATTTGCAGTAATATATATTACATAAATGATAATCTGGACAAGAGGACTTGGACTTACATCTTCGGAGCTTGCTGTGCCACCACTGTCTTTATCCCTTCATTTCACAACTACAGAGTTTGGTCATTTTTGGGTCTTGTTATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCCTTCCTCCATGGCCAGGTTGAGGGAGTGAAGCACTCTGGTCCGACTAAGCTGGTGCTATACTTCACCGGGGCCACAAACATTCTATACACCTTCGGGGGACATGCTGTTACTGTGGAGATCATGCATGCTATGTGGAAACCTCAGAAGTTCAAGGCCATATATTTATTTGCTACCCTGTATGTGCTGACACTGACCCTTCCCTCTGCATCAGCAGTGTATTGGGCATTTGGAGACTTGCTTCTTAACCACTCCAACGCTTTCTCTCTCCTCCCTAAATCTCCCTTCAGAGACATGGCTGTCATTTTAATGCTCATCCACCAGTTTATAACATTTGGGTTTGCATGCACACCACTATACTTTGTGTGGGAGAAAGCCATTGGCATGCATGAATGCAAGAGCGTGTGCAAGAGAGCAGCAGCAAGACTGCCTGTGGTGATCCCCATCTGGTTCTTGGCCATCATCTTCCCATTCTTTGGACCAATCAATTCCACCGTTGGATCACTCCTAGTCAGCTTCACAGTCTACATCATCCCAGCCCTGGCCCACATTTTCACTTACCGATCAGCTGCTGCAAGAGAGAATGCAGTGGAGAGCCCACCGAGATTCCTAGGAGGATGGATAGGATCATACACAATCAATGTGTTTGTGGTGGTGTGGGTGTTTGTGGTCGGGTTTGGATTCGGGGGGTGGGCGATGTTACCAATGCCCTCCGCCGCTGCCGCCCATGGTCTTCAACACAACTTCCGCTCCTCCTCCTCTCCGCCACCCTCTGCCTCGCAATCACTCCCATACCCCTTGATTTATGCACTCCCACTTTTGGTTACTCCACGCCCGGTAGTAAGCCCAAATGGACACAACAACAAAGGTGTGGAGTTGAATGAAAACCCATCAAGGGAAGGAAGAAAAATGCTTGTGGCCTATATTACGATTTCCACACCTTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

379

Amino Acids

42.03

Weight (kDa)

9.43

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	936
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	5 cut(s)	900, 903, 909, 934, 950
AclWI	GGATC	3 cut(s)	619, 694, 820
AcoI	YGGCCR	2 cut(s)	199, 642
AcuI	CTGAAG	1 cut(s)	457
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	6 cut(s)	202, 208, 662, 727, 1006, 1081
AgsI	TTSAA	4 cut(s)	340, 923, 1066, 1131
AjnI	CCWGG	2 cut(s)	201, 726
AluBI	AGCT	4 cut(s)	80, 238, 702, 755
AluI	AGCT	4 cut(s)	80, 238, 702, 755
Alw26I	GTCTC	2 cut(s)	414, 471
AlwI	GGATC	3 cut(s)	619, 694, 820
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	6 cut(s)	199, 258, 342, 642, 729, 1104
ApeKI	GCWGC	5 cut(s)	602, 605, 755, 758, 905
Asp718I	GGTACC	1 cut(s)	171
AspA2I	CCTAGG	1 cut(s)	796
AspS9I	GGNCC	4 cut(s)	227, 258, 665, 730
AsuC2I	CCSGG	2 cut(s)	256, 1022
AsuHPI	GGTGA	3 cut(s)	169, 244, 634
AvaII	GGWCC	2 cut(s)	227, 665
AvrII	CCTAGG	1 cut(s)	796
BalI	TGGCCA	2 cut(s)	201, 644
BanI	GGYRCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	785
BbsI	GAAGAC	1 cut(s)	911
BbvI	GCAGC	5 cut(s)	614, 617, 742, 745, 892
BccI	CCATC	4 cut(s)	638, 653, 798, 1084
BciT130I	CCWGG	2 cut(s)	203, 728
BcnI	CCSGG	2 cut(s)	256, 1022
BcoDI	GTCTC	2 cut(s)	414, 471
BfaI	CTAG	2 cut(s)	695, 797
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	7 cut(s)	603, 606, 756, 759, 903, 906, 909
BlnI	CCTAGG	1 cut(s)	796
BlsI	GCNGC	7 cut(s)	604, 607, 757, 760, 904, 907, 910
Bme1390I	CCNGG	4 cut(s)	203, 256, 728, 1022
Bme18I	GGWCC	2 cut(s)	227, 665
BmgT120I	GGNCC	4 cut(s)	227, 258, 665, 730
BmiI	GGNNCC	2 cut(s)	173, 259
BmrFI	CCNGG	4 cut(s)	203, 256, 728, 1022
BmsI	GCATC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	911
BpuMI	CCSGG	2 cut(s)	256, 1022
BsaBI	GATNNNNATC	1 cut(s)	629
BsaJI	CCNNGG	5 cut(s)	196, 255, 726, 796, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 208, 662, 727, 1006, 1081
Bse1I	ACTGG	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	203, 728
BseDI	CCNNGG	5 cut(s)	196, 255, 726, 796, 913
BseGI	GGATG	3 cut(s)	501, 717, 809
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	6 cut(s)	202, 208, 662, 727, 1006, 1081
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	4 cut(s)	446, 928, 931, 934
BseXI	GCAGC	5 cut(s)	614, 617, 742, 745, 892
BseYI	CCCAGC	1 cut(s)	721
BshFI	GGCC	6 cut(s)	201, 260, 344, 644, 731, 1106
BshNI	GGYRCC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	255, 1022
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	6 cut(s)	202, 208, 662, 727, 1006, 1081
BsmAI	GTCTC	2 cut(s)	414, 471
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	2 cut(s)	584, 775
BsnI	GGCC	6 cut(s)	201, 260, 344, 644, 731, 1106
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp143I	GATC	5 cut(s)	306, 624, 686, 749, 812
Bsp19I	CCATGG	2 cut(s)	196, 913
BspACI	CCGC	5 cut(s)	900, 903, 909, 934, 950
BspANI	GGCC	6 cut(s)	201, 260, 344, 644, 731, 1106
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	173, 259
BspPI	GGATC	3 cut(s)	619, 694, 820
BspT107I	GGYRCC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	5 cut(s)	196, 255, 726, 796, 913
BssMI	GATC	5 cut(s)	306, 624, 686, 749, 812
BssT1I	CCWWGG	3 cut(s)	196, 796, 913
Bst2UI	CCWGG	2 cut(s)	203, 728
Bst4CI	ACNGT	4 cut(s)	97, 301, 682, 709
BstC8I	GCNNGC	4 cut(s)	82, 315, 532, 572
BstDEI	CTNAG	2 cut(s)	234, 330
BstDSI	CCRYGG	2 cut(s)	196, 913
BstF5I	GGATG	3 cut(s)	501, 717, 809
BstKTI	GATC	5 cut(s)	309, 627, 689, 752, 815
BstMAI	GTCTC	2 cut(s)	414, 471
BstMBI	GATC	5 cut(s)	306, 624, 686, 749, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 908
BstNI	CCWGG	2 cut(s)	203, 728
BstNSI	RCATGY	4 cut(s)	293, 317, 534, 574
BstSCI	CCNGG	4 cut(s)	201, 254, 726, 1020
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	5 cut(s)	614, 617, 742, 745, 892
BstV2I	GAAGAC	1 cut(s)	911
BsuRI	GGCC	6 cut(s)	201, 260, 344, 644, 731, 1106
BtgI	CCRYGG	2 cut(s)	196, 913
BtgZI	GCGATG	1 cut(s)	896
BtsCI	GGATG	3 cut(s)	501, 717, 809
BtsI	GCAGTG	3 cut(s)	162, 408, 780
BtsIMutI	CAGTG	5 cut(s)	93, 162, 377, 408, 780
Cac8I	GCNNGC	4 cut(s)	82, 315, 532, 572
CaiI	CAGNNNCTG	1 cut(s)	758
Cfr13I	GGNCC	4 cut(s)	227, 258, 665, 730
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	9 cut(s)	197, 290, 310, 314, 481, 531, 571, 575, 914
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	234, 330
DpnI	GATC	5 cut(s)	308, 626, 688, 751, 814
DpnII	GATC	5 cut(s)	306, 624, 686, 749, 812
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EaeI	YGGCCR	2 cut(s)	199, 642
EciI	GGCGGA	2 cut(s)	889, 939
Eco130I	CCWWGG	3 cut(s)	196, 796, 913
Eco24I	GRGCYC	1 cut(s)	785
Eco47I	GGWCC	2 cut(s)	227, 665
Eco57I	CTGAAG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	201, 726
EcoT14I	CCWWGG	3 cut(s)	196, 796, 913
EcoT22I	ATGCAT	2 cut(s)	315, 576
EcoT38I	GRGCYC	1 cut(s)	785
ErhI	CCWWGG	3 cut(s)	196, 796, 913
FaeI	CATG	9 cut(s)	200, 293, 313, 317, 484, 534, 574, 578, 917
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	9 cut(s)	196, 289, 309, 313, 480, 530, 570, 574, 913
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	7 cut(s)	603, 606, 756, 759, 903, 906, 909
FokI	GGATG	3 cut(s)	488, 704, 816
FriOI	GRGCYC	1 cut(s)	785
Fsp4HI	GCNGC	7 cut(s)	603, 606, 756, 759, 903, 906, 909
FspBI	CTAG	2 cut(s)	695, 797
GluI	GCNGC	7 cut(s)	603, 606, 756, 759, 903, 906, 909
GsaI	CCCAGC	1 cut(s)	725
HaeIII	GGCC	6 cut(s)	201, 260, 344, 644, 731, 1106
HapII	CCGG	2 cut(s)	255, 1022
Hin1II	CATG	9 cut(s)	200, 293, 313, 317, 484, 534, 574, 578, 917
HinfI	GANTC	2 cut(s)	792, 867
HpaII	CCGG	2 cut(s)	255, 1022
HphI	GGTGA	3 cut(s)	169, 244, 634
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	4 cut(s)	77, 231, 333, 476
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	7 cut(s)	117, 199, 289, 395, 481, 1079, 1137
HpyCH4III	ACNGT	4 cut(s)	97, 301, 682, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 908
HpyF3I	CTNAG	2 cut(s)	234, 330
Hsp92II	CATG	9 cut(s)	200, 293, 313, 317, 484, 534, 574, 578, 917
KpnI	GGTACC	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	306, 624, 686, 749, 812
LmnI	GCTCC	2 cut(s)	77, 941
Lsp1109I	GCAGC	5 cut(s)	614, 617, 742, 745, 892
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	695, 797
MaeIII	GTNAC	3 cut(s)	295, 885, 1009
MalI	GATC	5 cut(s)	308, 626, 688, 751, 814
MbiI	CCGCTC	1 cut(s)	936
MboI	GATC	5 cut(s)	306, 624, 686, 749, 812
MboII	GAAGA	4 cut(s)	64, 643, 911, 1101
MhlI	GDGCHC	1 cut(s)	785
MlsI	TGGCCA	2 cut(s)	201, 644
MluCI	AATT	2 cut(s)	12, 673
MluNI	TGGCCA	2 cut(s)	201, 644
MmeI	TCCRAC	3 cut(s)	254, 465, 664
Mox20I	TGGCCA	2 cut(s)	201, 644
Mph1103I	ATGCAT	2 cut(s)	315, 576
MscI	TGGCCA	2 cut(s)	201, 644
MseI	TTAA	3 cut(s)	11, 432, 494
MslI	CAYNNNNRTG	2 cut(s)	494, 569
Msp20I	TGGCCA	2 cut(s)	201, 644
MspA1I	CMGCKG	2 cut(s)	755, 905
MspI	CCGG	2 cut(s)	255, 1022
MspR9I	CCNGG	4 cut(s)	203, 256, 728, 1022
Mva1269I	GAATGC	2 cut(s)	584, 775
MvaI	CCWGG	2 cut(s)	203, 728
MwoI	GCNNNNNNNGC	2 cut(s)	86, 908
NciI	CCSGG	2 cut(s)	256, 1022
NcoI	CCATGG	2 cut(s)	196, 913
NdeII	GATC	5 cut(s)	306, 624, 686, 749, 812
NlaIII	CATG	9 cut(s)	200, 293, 313, 317, 484, 534, 574, 578, 917
NlaIV	GGNNCC	2 cut(s)	173, 259
NsiI	ATGCAT	2 cut(s)	315, 576
NspI	RCATGY	4 cut(s)	293, 317, 534, 574
PaeI	GCATGC	3 cut(s)	317, 534, 574
PctI	GAATGC	2 cut(s)	584, 775
PfeI	GAWTC	2 cut(s)	792, 867
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	7 cut(s)	604, 607, 757, 760, 904, 907, 910
PsiI	TTATAA	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	201, 726
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	2 cut(s)	201, 726
PspN4I	GGNNCC	2 cut(s)	173, 259
PspPI	GGNCC	4 cut(s)	227, 258, 665, 730
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	494, 569
SaqAI	TTAA	3 cut(s)	11, 432, 494
SatI	GCNGC	7 cut(s)	603, 606, 756, 759, 903, 906, 909
Sau3AI	GATC	5 cut(s)	306, 624, 686, 749, 812
Sau96I	GGNCC	4 cut(s)	227, 258, 665, 730
ScrFI	CCNGG	4 cut(s)	203, 256, 728, 1022
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	227, 665
SmiMI	CAYNNNNRTG	2 cut(s)	494, 569
SphI	GCATGC	3 cut(s)	317, 534, 574
Sse9I	AATT	2 cut(s)	12, 673
SsiI	CCGC	5 cut(s)	900, 903, 909, 934, 950
SspMI	CTAG	2 cut(s)	695, 797
StyD4I	CCNGG	4 cut(s)	201, 254, 726, 1020
StyI	CCWWGG	3 cut(s)	196, 796, 913
TaaI	ACNGT	4 cut(s)	97, 301, 682, 709
TasI	AATT	2 cut(s)	12, 673
TauI	GCSGC	2 cut(s)	905, 911
TfiI	GAWTC	2 cut(s)	792, 867
Tru1I	TTAA	3 cut(s)	11, 432, 494
Tru9I	TTAA	3 cut(s)	11, 432, 494
TscAI	CASTG	5 cut(s)	100, 169, 384, 408, 780
TseI	GCWGC	5 cut(s)	602, 605, 755, 758, 905
TspDTI	ATGAA	3 cut(s)	99, 591, 1083
TspRI	CASTG	5 cut(s)	100, 169, 384, 408, 780
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	227, 665
XceI	RCATGY	4 cut(s)	293, 317, 534, 574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmaJI	CCTAGG	1 cut(s)	796
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	2 cut(s)	695, 797
Zsp2I	ATGCAT	2 cut(s)	315, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.