Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000406.1

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 1683

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000406.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 749 bp

atgctttcaggaatactcttccagctcttctatggcttattgggtagctggactgcttatctcattagtgtactctatgttgaatacagaaccagaaaagaaagagaaaaagttgatttcagaaaccatgtcattcagtggtttgaagttcttgatgggctgcttgggaagcactggaggaacgtggggttagcatttaactgcacatttcttctgtttggatctgtgattcagctcatagcttgtgcaagcaacatatattacataaatgacaatctggacaagaggacctggacttacatcttcggagcttgttgtgccaccacagtgtttattccttcctttcacaattacagaatctggtcctttttgggcctagtaatgactacttacactgcttggtacctcaccattgcttcaatcctccatggtcaggttgagggagtgaagcactctggtccaactaagctggtgctatacttcacaggggctacaaacattctctacacttttgggggacatgctgttactgtggagattatgcacgcaatgtggaagcctcagaagttcaaggccatatatttactggctaccatctatgtgctgacattgacccttccttctgcatcggctgtctactgggcatttggagacttgcttcttgatcactccaatgccttttctctcctcccaaaatcgcacttcagagatatggcagtcattttaatgctcatccaccaggcacgaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

249

Amino Acids

28.55

Weight (kDa)

9.1

Isoelectric Point (pI)

22.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	636
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	688
AfaI	GTAC	2 cut(s)	72, 404
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	83, 146, 420, 571
AjnI	CCWGG	2 cut(s)	290, 738
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	6 cut(s)	25, 48, 235, 242, 311, 469
AluI	AGCT	6 cut(s)	25, 48, 235, 242, 311, 469
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	360
AoxI	GGCC	2 cut(s)	373, 573
ApeKI	GCWGC	1 cut(s)	160
Asp718I	GGTACC	1 cut(s)	402
AspS9I	GGNCC	4 cut(s)	288, 363, 373, 458
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	3 cut(s)	288, 363, 458
BanI	GGYRCC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	149, 602
BciT130I	CCWGG	2 cut(s)	292, 740
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	1 cut(s)	377
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	292, 740
Bme18I	GGWCC	3 cut(s)	288, 363, 458
BmgT120I	GGNCC	4 cut(s)	288, 363, 373, 458
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	2 cut(s)	292, 740
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	1 cut(s)	635
BmuI	ACTGGG	1 cut(s)	649
BpmI	CTGGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	179, 591, 644
Bse3DI	GCAATG	2 cut(s)	411, 555
BseBI	CCWGG	2 cut(s)	292, 740
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	411, 555
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	3 cut(s)	179, 591, 644
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	375, 575
BshNI	GGYRCC	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	375, 575
Bsp143I	GATC	2 cut(s)	221, 664
Bsp19I	CCATGG	1 cut(s)	427
BspANI	GGCC	2 cut(s)	375, 575
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	411, 555
BsrI	ACTGG	3 cut(s)	179, 591, 644
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	2 cut(s)	221, 664
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	292, 740
Bst4CI	ACNGT	2 cut(s)	328, 532
Bst6I	CTCTTC	2 cut(s)	23, 32
BstC8I	GCNNGC	2 cut(s)	250, 546
BstDEI	CTNAG	2 cut(s)	465, 561
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	732
BstKTI	GATC	2 cut(s)	224, 667
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	2 cut(s)	221, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 317
BstNI	CCWGG	2 cut(s)	292, 740
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	290, 738
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	375, 575
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	732
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	143, 172, 333, 393
Cac8I	GCNNGC	2 cut(s)	250, 546
CaiI	CAGNNNCTG	1 cut(s)	360
Cfr13I	GGNCC	4 cut(s)	288, 363, 373, 458
Csp6I	GTAC	2 cut(s)	71, 403
CviAII	CATG	3 cut(s)	128, 428, 521
CviQI	GTAC	2 cut(s)	71, 403
DdeI	CTNAG	2 cut(s)	465, 561
DpnI	GATC	2 cut(s)	223, 666
DpnII	GATC	2 cut(s)	221, 664
Eam1104I	CTCTTC	2 cut(s)	23, 32
EarI	CTCTTC	2 cut(s)	23, 32
Eco130I	CCWWGG	1 cut(s)	427
Eco47I	GGWCC	3 cut(s)	288, 363, 458
Eco57I	CTGAAG	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	290, 738
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	131, 431, 524
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	3 cut(s)	127, 427, 520
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	375, 575
Hin1II	CATG	3 cut(s)	131, 431, 524
HinfI	GANTC	2 cut(s)	229, 357
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	71, 637
Hpy188I	TCNGA	4 cut(s)	122, 308, 564, 707
Hpy188III	TCNNGA	4 cut(s)	9, 152, 278, 662
Hpy8I	GTNNAC	2 cut(s)	71, 637
HpyAV	CCTTC	3 cut(s)	348, 626, 630
HpyCH4III	ACNGT	2 cut(s)	328, 532
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	204, 248, 544, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 317
HpyF3I	CTNAG	2 cut(s)	465, 561
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	131, 431, 524
KpnI	GGTACC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	221, 664
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	2 cut(s)	223, 666
MboI	GATC	2 cut(s)	221, 664
MboII	GAAGA	4 cut(s)	10, 19, 203, 295
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	171, 279, 416, 433, 434, 570, 698
MseI	TTAA	2 cut(s)	198, 725
MslI	CAYNNNNRTG	4 cut(s)	326, 599, 672, 725
MspR9I	CCNGG	2 cut(s)	292, 740
MvaI	CCWGG	2 cut(s)	292, 740
MwoI	GCNNNNNNNGC	2 cut(s)	169, 317
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	221, 664
NlaIII	CATG	3 cut(s)	131, 431, 524
NlaIV	GGNNCC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	229, 357
PkrI	GCNGC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	290, 738
PspGI	CCWGG	2 cut(s)	290, 738
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	4 cut(s)	288, 363, 373, 458
PspPPI	RGGWCCY	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	2 cut(s)	72, 404
RsaNI	GTAC	2 cut(s)	71, 403
RseI	CAYNNNNRTG	4 cut(s)	326, 599, 672, 725
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	198, 725
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	221, 664
Sau96I	GGNCC	4 cut(s)	288, 363, 373, 458
ScrFI	CCNGG	2 cut(s)	292, 740
SfaNI	GCATC	1 cut(s)	635
SinI	GGWCC	3 cut(s)	288, 363, 458
SmiMI	CAYNNNNRTG	4 cut(s)	326, 599, 672, 725
Sse9I	AATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	290, 738
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	328, 532
TaiI	ACGT	1 cut(s)	186
TasI	AATT	1 cut(s)	349
TatI	WGTACW	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	229, 357
Tru1I	TTAA	2 cut(s)	198, 725
Tru9I	TTAA	2 cut(s)	198, 725
TscAI	CASTG	4 cut(s)	143, 179, 333, 400
TseI	GCWGC	1 cut(s)	160
TspRI	CASTG	4 cut(s)	143, 179, 333, 400
VpaK11BI	GGWCC	3 cut(s)	288, 363, 458
XceI	RCATGY	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	2 cut(s)	29, 583
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.