Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Forward (+)

1646769 .. 1650715

Gene Structure 3947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG015400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAATCTTCAGACAAGGTGGTGGAGACTGTGATAGTAGGAAACTATGTAGAAATGGAGGCTGATGGGAAAGGCAAGGACTTCAAGTCCAAGCTTTCCAAGTTCTTCTGGGATGGTGGCTCTACTTATGATGCTTGGTTCAGCTGTGCTTCAAATCAGGTGGCTCAAGTCCTGCTTACTCTGCCATACTCATTTTCACAGCTGGGAATGCTTTCAGGAATACTCTTCCAGCTCTTCTATGGCTTACTGGGTAGCTGGACTGCTTATCTCATTAGTGTACTCTATGTTGAATACAGAACCAGAAAAGAAAGAGAAAAAGTTGATTTCAGAAACCATGTCATTCAGTGGTTTGAAGTTCTTGATGGGCTACTTGGGAAGCACTGGAGGAACGTGGGGTTAGCATTTAACTGCACATTTCTTCTGTTTGGATCTGTGATTCAGCTCATAGCTTGTGCAAGCAACATATATTACATAAATGACAATCTGGACAAGAGGACCTGGACGTACATCTTCGGAGCTTGTTGTGCCACCACAGTCTTTATTCCTTCCTTTCACAATTACAGAATCTGGTCCTTTTTGGGCCTAGTAATGACTACTTACACTGCTTGGTACCTCACCATTGCTTCCATCCTCCATGGTCAGGTTGAGGGAGTGAAGCACTCTGGTCCAACTAAGCTGGTACTATACTTCACAGGGGCTACAAACATTCTCTACACTTTTGGGGGACATGCTGTTACTGTGGAGATTATGCACGCAATGTGGAAGCCTCAGAAGTTCAAGGCCATATATTTACTGGCTACCATCTATGTGCTGACACTGACCCTTCCTTCTGCATCAGCTGTATACTGGGCTTTTGGAGACTTGCTTCTTGATCACTCCAATGCTTTTTCTCTCCTCCCAAAATCGCACTTCAGAGATATGGCAGTCATTTTAATGCTTATCCACCAGTTCATAACATTTGGGTTTGCATGCACACCGCTATACTTTGTTTGGGAGAAAGCTATTGGTATGCATGACTGCAAGAGCTTGTGCAAGAGAGCAGCAGCAAGATTGCCGGTGGTCATCCCCATTTGGTTCTTGGCCATCATCTTCCCATTTTTTGGACCCATAAACTCCACAGTTGGATCACTTCTAGTTAGCTTCACAGTCTACATTATCCCATCTCTGGCCCACATCTTCACCTACAGATCAGCTGCTGCTAGAGAGGTACTACCTTACTTGAATTTTCTTAATTACCCTCCAGCTGCAATATCTGAATCTTTGTCAGGTCTGAGTCTTGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

428

Amino Acids

48.33

Weight (kDa)

8.48

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 399	5.5e-81	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	609
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AccI	GTMKAC	2 cut(s)	843, 1149
AciI	CCGC	1 cut(s)	977
AclWI	GGATC	2 cut(s)	436, 1132
AcoI	YGGCCR	1 cut(s)	1080
AcsI	RAATTY	1 cut(s)	1222
AcuI	CTGAAG	1 cut(s)	895
AfaI	GTAC	5 cut(s)	279, 506, 611, 681, 1209
AfiI	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
AgsI	TTSAA	6 cut(s)	85, 153, 290, 353, 778, 1222
AhdI	GACNNNNNGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	20, 852
AlwI	GGATC	2 cut(s)	436, 1132
AlwNI	CAGNNNCTG	2 cut(s)	567, 1196
AoxI	GGCC	4 cut(s)	580, 780, 1080, 1167
ApeKI	GCWGC	5 cut(s)	1040, 1043, 1193, 1196, 1244
ApoI	RAATTY	1 cut(s)	1222
Asp700I	GAANNNNTTC	1 cut(s)	211
Asp718I	GGTACC	1 cut(s)	609
AspS9I	GGNCC	6 cut(s)	495, 570, 580, 665, 1103, 1168
AsuHPI	GGTGA	2 cut(s)	607, 1171
AvaII	GGWCC	4 cut(s)	495, 570, 665, 1103
BalI	TGGCCA	1 cut(s)	1082
BanI	GGYRCC	1 cut(s)	609
BbvI	GCAGC	5 cut(s)	1052, 1055, 1180, 1183, 1231
BccI	CCATC	7 cut(s)	59, 107, 356, 635, 809, 1091, 1168
BciT130I	CCWGG	1 cut(s)	499
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	20, 852
BfaI	CTAG	3 cut(s)	584, 1133, 1200
BfmI	CTRYAG	1 cut(s)	1183
BisI	GCNGC	5 cut(s)	1041, 1044, 1194, 1197, 1245
BlsI	GCNGC	5 cut(s)	1042, 1045, 1195, 1198, 1246
Bme1390I	CCNGG	1 cut(s)	499
Bme18I	GGWCC	4 cut(s)	495, 570, 665, 1103
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgT120I	GGNCC	6 cut(s)	495, 570, 580, 665, 1103, 1168
BmiI	GGNNCC	2 cut(s)	611, 1105
BmrFI	CCNGG	1 cut(s)	499
BmrI	ACTGGG	2 cut(s)	257, 856
BmsI	GCATC	2 cut(s)	121, 842
BmuI	ACTGGG	2 cut(s)	257, 856
BpmI	CTGGAG	2 cut(s)	403, 1224
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
Bse118I	RCCGGY	1 cut(s)	1054
Bse1I	ACTGG	5 cut(s)	252, 386, 798, 851, 946
Bse3DI	GCAATG	2 cut(s)	618, 762
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	3 cut(s)	118, 627, 1062
BseLI	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
BseMI	GCAATG	2 cut(s)	618, 762
BseMII	CTCAG	2 cut(s)	782, 1262
BseNI	ACTGG	5 cut(s)	252, 386, 798, 851, 946
BseRI	GAGGAG	1 cut(s)	884
BseXI	GCAGC	5 cut(s)	1052, 1055, 1180, 1183, 1231
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	4 cut(s)	582, 782, 1082, 1169
BshNI	GGYRCC	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	1055
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	3 cut(s)	640, 1100, 1165
BsmAI	GTCTC	2 cut(s)	20, 852
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	4 cut(s)	582, 782, 1082, 1169
Bsp143I	GATC	4 cut(s)	428, 871, 1124, 1187
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	1 cut(s)	977
BspANI	GGCC	4 cut(s)	582, 782, 1082, 1169
BspCNI	CTCAG	2 cut(s)	781, 1263
BspLI	GGNNCC	2 cut(s)	611, 1105
BspPI	GGATC	2 cut(s)	436, 1132
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	609
BsrDI	GCAATG	2 cut(s)	618, 762
BsrFI	RCCGGY	1 cut(s)	1054
BsrI	ACTGG	5 cut(s)	252, 386, 798, 851, 946
BssAI	RCCGGY	1 cut(s)	1054
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	4 cut(s)	428, 871, 1124, 1187
BssNAI	GTATAC	1 cut(s)	844
BssT1I	CCWWGG	1 cut(s)	634
Bst1107I	GTATAC	1 cut(s)	844
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
Bst6I	CTCTTC	2 cut(s)	230, 239
BstC8I	GCNNGC	3 cut(s)	457, 753, 970
BstDEI	CTNAG	3 cut(s)	672, 768, 1271
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	3 cut(s)	118, 627, 1062
BstKTI	GATC	4 cut(s)	431, 874, 1127, 1190
BstMAI	GTCTC	2 cut(s)	20, 852
BstMBI	GATC	4 cut(s)	428, 871, 1124, 1187
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 208, 524
BstNI	CCWGG	1 cut(s)	499
BstNSI	RCATGY	2 cut(s)	731, 972
BstSCI	CCNGG	1 cut(s)	497
BstSFI	CTRYAG	1 cut(s)	1183
BstV1I	GCAGC	5 cut(s)	1052, 1055, 1180, 1183, 1231
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	844
BsuRI	GGCC	4 cut(s)	582, 782, 1082, 1169
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	118, 627, 1062
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	4 cut(s)	350, 379, 600, 815
Cac8I	GCNNGC	3 cut(s)	457, 753, 970
CaiI	CAGNNNCTG	2 cut(s)	567, 1196
Cfr10I	RCCGGY	1 cut(s)	1054
Cfr13I	GGNCC	6 cut(s)	495, 570, 580, 665, 1103, 1168
Csp6I	GTAC	5 cut(s)	278, 505, 610, 680, 1208
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	5 cut(s)	335, 635, 728, 969, 1013
CviQI	GTAC	5 cut(s)	278, 505, 610, 680, 1208
DdeI	CTNAG	3 cut(s)	672, 768, 1271
DpnI	GATC	4 cut(s)	430, 873, 1126, 1189
DpnII	GATC	4 cut(s)	428, 871, 1124, 1187
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	1080
Eam1104I	CTCTTC	2 cut(s)	230, 239
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EarI	CTCTTC	2 cut(s)	230, 239
Eco130I	CCWWGG	1 cut(s)	634
Eco47I	GGWCC	4 cut(s)	495, 570, 665, 1103
Eco57I	CTGAAG	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	5 cut(s)	338, 638, 731, 972, 1016
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	5 cut(s)	334, 634, 727, 968, 1012
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	2 cut(s)	843, 1149
Fnu4HI	GCNGC	5 cut(s)	1041, 1044, 1194, 1197, 1245
FokI	GGATG	3 cut(s)	125, 614, 1049
Fsp4HI	GCNGC	5 cut(s)	1041, 1044, 1194, 1197, 1245
FspBI	CTAG	3 cut(s)	584, 1133, 1200
GluI	GCNGC	5 cut(s)	1041, 1044, 1194, 1197, 1245
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	2 cut(s)	403, 1224
HaeIII	GGCC	4 cut(s)	582, 782, 1082, 1169
HapII	CCGG	1 cut(s)	1055
Hin1II	CATG	5 cut(s)	338, 638, 731, 972, 1016
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	6 cut(s)	5, 436, 564, 1256, 1273, 1280
HpaII	CCGG	1 cut(s)	1055
HphI	GGTGA	2 cut(s)	607, 1171
Hpy166II	GTNNAC	3 cut(s)	278, 844, 1150
Hpy188I	TCNGA	7 cut(s)	13, 329, 515, 771, 914, 1255, 1272
Hpy188III	TCNNGA	5 cut(s)	216, 359, 485, 869, 1277
Hpy8I	GTNNAC	3 cut(s)	278, 844, 1150
HpyAV	CCTTC	3 cut(s)	555, 833, 837
HpyCH4III	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
HpyCH4IV	ACGT	2 cut(s)	390, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 208, 524
HpyF3I	CTNAG	3 cut(s)	672, 768, 1271
HpySE526I	ACGT	2 cut(s)	390, 503
Hsp92II	CATG	5 cut(s)	338, 638, 731, 972, 1016
KpnI	GGTACC	1 cut(s)	613
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	4 cut(s)	428, 871, 1124, 1187
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	5 cut(s)	1052, 1055, 1180, 1183, 1231
LweI	GCATC	2 cut(s)	121, 842
MaeI	CTAG	3 cut(s)	584, 1133, 1200
MaeII	ACGT	2 cut(s)	390, 503
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	4 cut(s)	430, 873, 1126, 1189
MboI	GATC	4 cut(s)	428, 871, 1124, 1187
MboII	GAAGA	7 cut(s)	97, 217, 226, 410, 502, 1081, 1168
MflI	RGATCY	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	1082
MluCI	AATT	3 cut(s)	556, 1222, 1231
MluNI	TGGCCA	1 cut(s)	1082
MlyI	GAGTC	1 cut(s)	1282
MmeI	TCCRAC	2 cut(s)	692, 1102
Mox20I	TGGCCA	1 cut(s)	1082
Mph1103I	ATGCAT	1 cut(s)	1014
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	1082
MseI	TTAA	3 cut(s)	405, 932, 1230
MslI	CAYNNNNRTG	3 cut(s)	806, 879, 932
Msp20I	TGGCCA	1 cut(s)	1082
MspA1I	CMGCKG	5 cut(s)	144, 202, 839, 1193, 1244
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	1 cut(s)	499
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	3 cut(s)	181, 208, 524
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	4 cut(s)	428, 871, 1124, 1187
NlaIII	CATG	5 cut(s)	338, 638, 731, 972, 1016
NlaIV	GGNNCC	2 cut(s)	611, 1105
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	2 cut(s)	731, 972
PaeI	GCATGC	1 cut(s)	972
PciSI	GCTCTTC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	4 cut(s)	5, 436, 564, 1256
PflMI	CCANNNNNTGG	1 cut(s)	1100
PkrI	GCNGC	5 cut(s)	1042, 1045, 1195, 1198, 1246
PleI	GAGTC	1 cut(s)	1281
PpsI	GAGTC	1 cut(s)	1281
PpuMI	RGGWCCY	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	611, 1105
PspPI	GGNCC	6 cut(s)	495, 570, 580, 665, 1103, 1168
PspPPI	RGGWCCY	1 cut(s)	495
PstNI	CAGNNNCTG	2 cut(s)	567, 1196
PsuI	RGATCY	1 cut(s)	428
PvuII	CAGCTG	5 cut(s)	144, 202, 839, 1193, 1244
RsaI	GTAC	5 cut(s)	279, 506, 611, 681, 1209
RsaNI	GTAC	5 cut(s)	278, 505, 610, 680, 1208
RseI	CAYNNNNRTG	3 cut(s)	806, 879, 932
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	405, 932, 1230
SatI	GCNGC	5 cut(s)	1041, 1044, 1194, 1197, 1245
Sau3AI	GATC	4 cut(s)	428, 871, 1124, 1187
Sau96I	GGNCC	6 cut(s)	495, 570, 580, 665, 1103, 1168
SchI	GAGTC	1 cut(s)	1282
ScrFI	CCNGG	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	121, 842
SfcI	CTRYAG	1 cut(s)	1183
SinI	GGWCC	4 cut(s)	495, 570, 665, 1103
SmiMI	CAYNNNNRTG	3 cut(s)	806, 879, 932
SmlI	CTYRAG	2 cut(s)	165, 1277
SmoI	CTYRAG	2 cut(s)	165, 1277
SphI	GCATGC	1 cut(s)	972
Sse9I	AATT	3 cut(s)	556, 1222, 1231
SsiI	CCGC	1 cut(s)	977
SspMI	CTAG	3 cut(s)	584, 1133, 1200
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	5 cut(s)	31, 535, 739, 1120, 1147
TaiI	ACGT	2 cut(s)	393, 506
TasI	AATT	3 cut(s)	556, 1222, 1231
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	4 cut(s)	5, 436, 564, 1256
Tru1I	TTAA	3 cut(s)	405, 932, 1230
Tru9I	TTAA	3 cut(s)	405, 932, 1230
TscAI	CASTG	4 cut(s)	350, 386, 607, 822
TseI	GCWGC	5 cut(s)	1040, 1043, 1193, 1196, 1244
TspDTI	ATGAA	1 cut(s)	940
TspRI	CASTG	4 cut(s)	350, 386, 607, 822
Van91I	CCANNNNNTGG	1 cut(s)	1100
VpaK11BI	GGWCC	4 cut(s)	495, 570, 665, 1103
XapI	RAATTY	1 cut(s)	1222
XceI	RCATGY	2 cut(s)	731, 972
XcmI	CCANNNNNNNNNTGG	3 cut(s)	236, 790, 1075
XmiI	GTMKAC	2 cut(s)	843, 1149
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	3 cut(s)	584, 1133, 1200
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.