Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012736

Physical Location & Seq

Genomic Coordinates Reverse (-)

17041434 .. 17045495

Gene Structure 4062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCTGCTTCTGCAGATAAGGTGGTGGACACAGTGATTGTAGGAAGTTATGTGGAGATGGAGACTGAAGGGAAGCCCAAGAGCGTCAAGAGCAAGCTCTCCAAGTTCTTTTGGGATGGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCTAATCAGGTGGCTCAAGTTCTGCTTACTTTGCCATACTCATTCTCACAGCTGGGGATGTTATCCGGCATTCTCTTCCAGCTCTTCTATGGCTTGCTGGGCAGCTGGACAGCTTACCTTATAAGCTCCCTCTATGTTGAATACAGAACCAGAAAAGAAAGAGAAAAAGTTGATTTCAGAAACCATGTCATCCAGTGGTTTGAAGTTCTTGATGGGCTGCTTGGAAAACACTGGAGGAACGTGGGCTTGGCATTTAACTGCACATTTCTTCTGTTTGGATCTGTCATTCAACTCATAGCTTGTGCAAGCAATATATATTATATAAATGACAATCTGGACAAGAGAACTTGGACTTACATCTTTGGAGCATGTTGTGCAACCACAGTCTTCATCCCTTCATTTCACAACTACAGAGTCTGGTCCTTTTTGGGCCTTGTTATGACAACTTACACTGCTTGGTACCTCACCATTGCCTCTTTCCTCCATGGCCAGGTTGAGGGAGTGAAGCACTCTGGTCCAACCAAGTTGGTGCTATACTTCACTGGGGCCACAAACATTCTCTACACTTTTGGGGGACATGCTGTTACTGTGGAGATCATGCATGCGATGTGGAAACCTCAGAAGTTCAAGGCCATATATTTATATGCCACCCTGTATGTGCTGACACTGACGCTTCCCTCTGCATCGGCAGTGTATTGGGCATTTGGCGACATGCTTCTTAACCACTCCAACGCCTTCTCTCTCCTCCCAAAATCTCCCTTCAGAGACATGGCTGTCATTTTGATGCTCATCCACCAGTTTATAACATTTGGGTTTGCATGCACACCACTGTACTTTGTGTGGGAGAAGGCCATTGGCATGCATGAGTGCAAGAGCTTGTGCAAGAGAGCAGCAGCAAGATTGCCTGTGGTCATCCCCATCTGGTTCTTGGCCATCATCTTCCCATTCTTTGGCCCCATCAACTCCACCGTAGGATCACTCCTTGTCAGCTTCACAGTCTACATCATCCCAGCTCTGGCCCACATCTTTACGTACAAATCCGCTGCTGCAAGAGAGAATGCAGTGGAGAGGCCACCAAGATTTCTGGGAGGGTGGATTGGTTCGTATACAATCAATGTGTTTGTGGTGGTGTGGGTGTTTGTGGTAGGTTTTGGATTCGGTGGGTGGGCGAGCATCACAAACTTTGTGCACCAGATTGACACATTTGGGCTCTTCACCAAGTGCTACCAGTGCCCTCCACCACCACCACCCATGGTCTTCAACACAACTTCAGCTCCTGCTCCGATCCACCACCCTCACCCTCACCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0007389 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010588 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022414 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:0071944 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

489

Amino Acids

54.94

Weight (kDa)

9.06

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21050
fragaria_vesca	FvH4_2g01570
malus_domestica	MD05G1118600.v1.1 MD10G1121700.v1.1
prunus_persica	Prupe.8G163100_v2.0.a1
pyrus_communis	pycom05g11270 pycom10g10470
rosa_chinensis	RchiOBHm_Chr6g0244221
rosa_laevigata	RLG00000015371
rosa_multiflora	Rmu_co8323625.1_g000001 Rmu_ssc0000406.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215910
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6AG022700 Rh6BG018500 Rh6CG015400 Rh6DG016500
rosa_wichuraiana	Rw6G001880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	275, 956
AasI	GACNNNNNNGTC	1 cut(s)	926
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	1103
AccI	GTMKAC	2 cut(s)	1152, 1259
AciI	CCGC	1 cut(s)	1194
AclWI	GGATC	3 cut(s)	439, 1135, 1432
AcoI	YGGCCR	2 cut(s)	640, 1083
AcuI	CTGAAG	3 cut(s)	87, 898, 1407
AdeI	CACNNNGTG	1 cut(s)	1374
AfaI	GTAC	3 cut(s)	614, 986, 1187
AfiI	CCNNNNNNNGG	4 cut(s)	643, 649, 1103, 1168
AgsI	TTSAA	5 cut(s)	293, 356, 443, 781, 1414
AjnI	CCWGG	1 cut(s)	642
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
Alw21I	GWGCWC	1 cut(s)	1344
Alw26I	GTCTC	2 cut(s)	56, 912
Alw44I	GTGCAC	1 cut(s)	1340
AlwI	GGATC	3 cut(s)	439, 1135, 1432
AlwNI	CAGNNNCTG	2 cut(s)	570, 1430
ApaLI	GTGCAC	1 cut(s)	1340
ApeKI	GCWGC	7 cut(s)	5, 255, 370, 1043, 1046, 1196, 1199
Asp718I	GGTACC	1 cut(s)	612
AspS9I	GGNCC	6 cut(s)	573, 583, 668, 699, 1106, 1171
AsuHPI	GGTGA	4 cut(s)	610, 1360, 1442, 1448
AvaII	GGWCC	2 cut(s)	573, 668
BaeGI	GKGCMC	2 cut(s)	1344, 1388
BalI	TGGCCA	2 cut(s)	642, 1085
BanI	GGYRCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	1365
BbsI	GAAGAC	2 cut(s)	532, 1402
Bbv12I	GWGCWC	1 cut(s)	1344
BbvI	GCAGC	6 cut(s)	267, 357, 1055, 1058, 1183, 1186
BccI	CCATC	6 cut(s)	52, 110, 359, 1079, 1094, 1118
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	56, 912
BfmI	CTRYAG	2 cut(s)	12, 562
BisI	GCNGC	7 cut(s)	6, 256, 371, 1044, 1047, 1197, 1200
BlsI	GCNGC	7 cut(s)	7, 257, 372, 1045, 1048, 1198, 1201
Bme1390I	CCNGG	1 cut(s)	644
Bme18I	GGWCC	2 cut(s)	573, 668
BmgT120I	GGNCC	6 cut(s)	573, 583, 668, 699, 1106, 1171
BmiI	GGNNCC	3 cut(s)	614, 700, 1108
BmrFI	CCNGG	1 cut(s)	644
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	4 cut(s)	124, 845, 927, 1335
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	532, 1402
BpmI	CTGGAG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	1185
BsaBI	GATNNNNATC	1 cut(s)	941
BsaJI	CCNNGG	2 cut(s)	637, 1404
BsaXI	ACNNNNNCTCC	2 cut(s)	1411, 1441
Bsc4I	CCNNNNNNNGG	4 cut(s)	643, 649, 1103, 1168
Bse118I	RCCGGY	1 cut(s)	1458
Bse1I	ACTGG	5 cut(s)	346, 389, 700, 949, 1381
Bse3DI	GCAATG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	941
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	2 cut(s)	637, 1404
BseGI	GGATG	7 cut(s)	121, 216, 342, 543, 942, 1065, 1158
BseJI	GATNNNNATC	1 cut(s)	941
BseLI	CCNNNNNNNGG	4 cut(s)	643, 649, 1103, 1168
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	5 cut(s)	346, 389, 700, 949, 1381
BseRI	GAGGAG	1 cut(s)	887
BseSI	GKGCMC	2 cut(s)	1344, 1388
BseXI	GCAGC	6 cut(s)	267, 357, 1055, 1058, 1183, 1186
BseYI	CCCAGC	3 cut(s)	205, 250, 1162
BsgI	GTGCAG	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	1344
BsiSI	CCGG	2 cut(s)	219, 1459
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	4 cut(s)	643, 649, 1103, 1168
BsmAI	GTCTC	2 cut(s)	56, 912
BsmFI	GGGAC	1 cut(s)	741
BsmI	GAATGC	2 cut(s)	222, 1216
Bsp1286I	GDGCHC	3 cut(s)	1344, 1365, 1388
Bsp143I	GATC	4 cut(s)	431, 747, 1127, 1437
Bsp19I	CCATGG	2 cut(s)	637, 1404
BspACI	CCGC	1 cut(s)	1194
BspCNI	CTCAG	1 cut(s)	784
BspLI	GGNNCC	3 cut(s)	614, 700, 1108
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	3 cut(s)	439, 1135, 1432
BspQI	GCTCTTC	2 cut(s)	242, 1370
BspT107I	GGYRCC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	1458
BsrI	ACTGG	5 cut(s)	346, 389, 700, 949, 1381
BssAI	RCCGGY	1 cut(s)	1458
BssECI	CCNNGG	2 cut(s)	637, 1404
BssMI	GATC	4 cut(s)	431, 747, 1127, 1437
BssNAI	GTATAC	1 cut(s)	1260
BssT1I	CCWWGG	2 cut(s)	637, 1404
Bst1107I	GTATAC	1 cut(s)	1260
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	6 cut(s)	34, 538, 742, 984, 1123, 1150
Bst6I	CTCTTC	3 cut(s)	233, 242, 1370
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	1185
BstC8I	GCNNGC	7 cut(s)	95, 248, 460, 756, 973, 1013, 1324
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	637, 1404
BstF5I	GGATG	7 cut(s)	121, 216, 342, 543, 942, 1065, 1158
BstKTI	GATC	4 cut(s)	434, 750, 1130, 1440
BstMAI	GTCTC	2 cut(s)	56, 912
BstMBI	GATC	4 cut(s)	431, 747, 1127, 1437
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 90, 134, 184, 252, 527, 1383
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	6 cut(s)	525, 734, 758, 868, 975, 1015
BstSCI	CCNGG	1 cut(s)	642
BstSFI	CTRYAG	2 cut(s)	12, 562
BstSLI	GKGCMC	2 cut(s)	1344, 1388
BstSNI	TACGTA	1 cut(s)	1185
BstV1I	GCAGC	6 cut(s)	267, 357, 1055, 1058, 1183, 1186
BstV2I	GAAGAC	2 cut(s)	532, 1402
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BstZ17I	GTATAC	1 cut(s)	1260
BtgI	CCRYGG	2 cut(s)	637, 1404
BtgZI	GCGATG	1 cut(s)	773
BtsCI	GGATG	7 cut(s)	121, 216, 342, 543, 942, 1065, 1158
BtsI	GCAGTG	3 cut(s)	603, 849, 1221
Cac8I	GCNNGC	7 cut(s)	95, 248, 460, 756, 973, 1013, 1324
CaiI	CAGNNNCTG	2 cut(s)	570, 1430
Cfr10I	RCCGGY	1 cut(s)	1458
Cfr13I	GGNCC	6 cut(s)	573, 583, 668, 699, 1106, 1171
CseI	GACGC	2 cut(s)	73, 832
Csp6I	GTAC	3 cut(s)	613, 985, 1186
CviQI	GTAC	3 cut(s)	613, 985, 1186
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	4 cut(s)	433, 749, 1129, 1439
DpnII	GATC	4 cut(s)	431, 747, 1127, 1437
DraIII	CACNNNGTG	1 cut(s)	1374
DrdI	GACNNNNNNGTC	1 cut(s)	926
DseDI	GACNNNNNNGTC	1 cut(s)	926
EaeI	YGGCCR	2 cut(s)	640, 1083
Eam1104I	CTCTTC	3 cut(s)	233, 242, 1370
EarI	CTCTTC	3 cut(s)	233, 242, 1370
Eco105I	TACGTA	1 cut(s)	1185
Eco130I	CCWWGG	2 cut(s)	637, 1404
Eco24I	GRGCYC	1 cut(s)	1365
Eco47I	GGWCC	2 cut(s)	573, 668
Eco57I	CTGAAG	3 cut(s)	87, 898, 1407
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	2 cut(s)	637, 1404
EcoT22I	ATGCAT	2 cut(s)	756, 1017
EcoT38I	GRGCYC	1 cut(s)	1365
ErhI	CCWWGG	2 cut(s)	637, 1404
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	741
FblI	GTMKAC	2 cut(s)	1152, 1259
Fnu4HI	GCNGC	7 cut(s)	6, 256, 371, 1044, 1047, 1197, 1200
FokI	GGATG	7 cut(s)	128, 223, 329, 530, 929, 1052, 1145
FriOI	GRGCYC	1 cut(s)	1365
Fsp4HI	GCNGC	7 cut(s)	6, 256, 371, 1044, 1047, 1197, 1200
GluI	GCNGC	7 cut(s)	6, 256, 371, 1044, 1047, 1197, 1200
GsaI	CCCAGC	3 cut(s)	209, 254, 1166
GsuI	CTGGAG	1 cut(s)	406
HapII	CCGG	2 cut(s)	219, 1459
HgaI	GACGC	2 cut(s)	73, 832
HinfI	GANTC	2 cut(s)	567, 1308
HpaII	CCGG	2 cut(s)	219, 1459
HphI	GGTGA	4 cut(s)	610, 1360, 1442, 1448
Hpy166II	GTNNAC	4 cut(s)	28, 1153, 1260, 1342
Hpy188I	TCNGA	4 cut(s)	332, 774, 917, 1437
Hpy188III	TCNNGA	3 cut(s)	88, 362, 488
Hpy8I	GTNNAC	4 cut(s)	28, 1153, 1260, 1342
HpyAV	CCTTC	5 cut(s)	62, 558, 898, 922, 994
HpyCH4III	ACNGT	6 cut(s)	34, 538, 742, 984, 1123, 1150
HpyCH4IV	ACGT	2 cut(s)	393, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 90, 134, 184, 252, 527, 1383
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	2 cut(s)	393, 1184
KpnI	GGTACC	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	431, 747, 1127, 1437
LguI	GCTCTTC	2 cut(s)	242, 1370
LmnI	GCTCC	4 cut(s)	284, 518, 1432, 1438
Lsp1109I	GCAGC	6 cut(s)	267, 357, 1055, 1058, 1183, 1186
LweI	GCATC	4 cut(s)	124, 845, 927, 1335
MaeII	ACGT	2 cut(s)	393, 1184
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	4 cut(s)	433, 749, 1129, 1439
MboI	GATC	4 cut(s)	431, 747, 1127, 1437
MboII	GAAGA	7 cut(s)	220, 229, 413, 532, 1084, 1357, 1402
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	3 cut(s)	1344, 1365, 1388
MlsI	TGGCCA	2 cut(s)	642, 1085
MluNI	TGGCCA	2 cut(s)	642, 1085
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	2 cut(s)	695, 906
Mox20I	TGGCCA	2 cut(s)	642, 1085
Mph1103I	ATGCAT	2 cut(s)	756, 1017
MscI	TGGCCA	2 cut(s)	642, 1085
MseI	TTAA	2 cut(s)	408, 873
MslI	CAYNNNNRTG	2 cut(s)	935, 1010
Msp20I	TGGCCA	2 cut(s)	642, 1085
MspA1I	CMGCKG	4 cut(s)	147, 205, 258, 1196
MspI	CCGG	2 cut(s)	219, 1459
MspR9I	CCNGG	1 cut(s)	644
Mva1269I	GAATGC	2 cut(s)	222, 1216
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	7 cut(s)	11, 90, 134, 184, 252, 527, 1383
NcoI	CCATGG	2 cut(s)	637, 1404
NdeII	GATC	4 cut(s)	431, 747, 1127, 1437
NlaIV	GGNNCC	3 cut(s)	614, 700, 1108
NsiI	ATGCAT	2 cut(s)	756, 1017
NspI	RCATGY	6 cut(s)	525, 734, 758, 868, 975, 1015
PaeI	GCATGC	3 cut(s)	758, 975, 1015
PciSI	GCTCTTC	2 cut(s)	242, 1370
PctI	GAATGC	2 cut(s)	222, 1216
PfeI	GAWTC	1 cut(s)	1308
PflMI	CCANNNNNTGG	1 cut(s)	1103
PkrI	GCNGC	7 cut(s)	7, 257, 372, 1045, 1048, 1198, 1201
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	1 cut(s)	1185
PsiI	TTATAA	2 cut(s)	275, 956
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	3 cut(s)	205, 250, 1162
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	614, 700, 1108
PspPI	GGNCC	6 cut(s)	573, 583, 668, 699, 1106, 1171
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	570, 1430
PsuI	RGATCY	1 cut(s)	431
PvuII	CAGCTG	3 cut(s)	147, 205, 258
RsaI	GTAC	3 cut(s)	614, 986, 1187
RsaNI	GTAC	3 cut(s)	613, 985, 1186
RseI	CAYNNNNRTG	2 cut(s)	935, 1010
SapI	GCTCTTC	2 cut(s)	242, 1370
SaqAI	TTAA	2 cut(s)	408, 873
SatI	GCNGC	7 cut(s)	6, 256, 371, 1044, 1047, 1197, 1200
Sau3AI	GATC	4 cut(s)	431, 747, 1127, 1437
Sau96I	GGNCC	6 cut(s)	573, 583, 668, 699, 1106, 1171
SchI	GAGTC	1 cut(s)	576
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	3 cut(s)	1344, 1365, 1388
SfaNI	GCATC	4 cut(s)	124, 845, 927, 1335
SfcI	CTRYAG	2 cut(s)	12, 562
SinI	GGWCC	2 cut(s)	573, 668
SmiMI	CAYNNNNRTG	2 cut(s)	935, 1010
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SnaBI	TACGTA	1 cut(s)	1185
SphI	GCATGC	3 cut(s)	758, 975, 1015
SsiI	CCGC	1 cut(s)	1194
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	2 cut(s)	637, 1404
TaaI	ACNGT	6 cut(s)	34, 538, 742, 984, 1123, 1150
TaiI	ACGT	2 cut(s)	396, 1187
TatI	WGTACW	1 cut(s)	984
TfiI	GAWTC	1 cut(s)	1308
Tru1I	TTAA	2 cut(s)	408, 873
Tru9I	TTAA	2 cut(s)	408, 873
TseI	GCWGC	7 cut(s)	5, 255, 370, 1043, 1046, 1196, 1199
TspDTI	ATGAA	2 cut(s)	532, 540
Van91I	CCANNNNNTGG	1 cut(s)	1103
VneI	GTGCAC	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	573, 668
XceI	RCATGY	6 cut(s)	525, 734, 758, 868, 975, 1015
XcmI	CCANNNNNNNNNTGG	2 cut(s)	239, 1078
XmiI	GTMKAC	2 cut(s)	1152, 1259
Zsp2I	ATGCAT	2 cut(s)	756, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.