MD10G1121700.v1.1

Auxin transporter-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
19878584 .. 19883150
4567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1121700.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGAGTCATCGGATAAGGTGGTGGAAACAGTGATAGTAGGAAATTATGTAGAAATGGAGGCAGATGGGAAGGCCAAGAGCTTCAAGAGCAAGCTCTCCAAGTTCTTATGGGATGGTGGGTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCTCAAGTTCTGCTTACTTTGCCGTACTCGTTCTCGCAGCTGGGAATGCTCTCTGGGATTCTCTTCCAGCTTTTCTATGGCTTGTTGGGCAGTTGGACTGCTTACCTGATTAGCACACTCTATATTGAATACAGAACCAGAAAAGAAAGAGAAAAAATTGATTTCAGAAACCATGTCATCCAGTGGTTTGAAGTTCTTGATGGACTGCTTGGGAAACACTGGAGGAACGTGGGGTTGGCATTTAACTGCACATTTCTTCTATTTGGATCTGTCATTCAACTCATAGCTTGTGCAAGTAATATATATTACATAAATGATAATCTGGACAAGAGGACTTGGACTTACATCTTCGGAGCTTGCTGTGCCACCACTGTCTTTATCCCTTCATTTCACAACTACAGAGTTTGGTCATTTTTGGGCCTTGTTATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCCTTCCTCCATGGCCAGGTTGAGGGAGTGAAGCACTCTGGTCCGACTAAGCTGGTGCTATACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGGGGACATGCTGTTACTGTGGAGATCATGCATGCTATGTGGAAACCTCAGAAGTTCAAGGCCATATATTTATTTGCTACCCTGTATGTGCTGACACTGACCCTTCCCTCTGCATCAGCAGTGTATTGGGCATTTGGAGACTTGCTTCTTAACCACTCCAACGCTTTCTCTCTCCTCCCTAAATCTCCCTTCAGAGACATGGCTGTCATTTTAATGCTCATCCACCAGTTTATAACATTTGGGTTTGCATGCACACCACTATACTTTGTGTGGGAGAAAGCCATTGGCATGCATGAATGCAAGAGCTTGTGCAAGAGAGCAGCAGCAAGACTGCCTGTGGTGATCCCTATCTGGTTCTTGGCCATCATCTTCCCATTCTTTGGACCAATCAATTCCACCGTTGGATCACTCCTAGTCAGCTTCACAGTCTACATCATCCCATCCCTGGCCCACATTTTCACTTACAGATCAGCTGCTGCAAGAGAGAATGCAGTGGAGAGCCCACCGAGATTCCTAGGAGGATGGATAGGATCATACACAATCAATGTGTTTGTGGTGGTGTGGGTGTTTGTGGTTGGGTTTGGATTCGGGGGTTGGGCGAGCATTACAAACTTTGTGCACCAGATCGACACATTTGGCCTCTTCACCAAGTGTTACCAATGCCCTCCGCCGCTGCCGCCCATGGTCTTTAACACAACTTCCGCTCCTCCTCCTCTCCGCCACCCTCTGCCTCGCAATCACTCCCTTACCCCTTGA

Protein Analysis

492

Amino Acids

55.36

Weight (kDa)

9.01

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 39 - 429 1.8e-79 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012736)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 953
AasI GACNNNNNNGTC 1 cut(s) 923
Acc65I GGTACC 1 cut(s) 609
AccB1I GGYRCC 1 cut(s) 609
AccB7I CCANNNNNTGG 1 cut(s) 1100
AccBSI CCGCTC 1 cut(s) 1424
AccI GTMKAC 1 cut(s) 1149
AciI CCGC 5 cut(s) 1388, 1391, 1397, 1422, 1438
AclWI GGATC 4 cut(s) 436, 1057, 1132, 1258
AcoI YGGCCR 2 cut(s) 637, 1080
AcuI CTGAAG 1 cut(s) 895
AdeI CACNNNGTG 1 cut(s) 1371
AfaI GTAC 2 cut(s) 188, 611
AfiI CCNNNNNNNGG 4 cut(s) 640, 646, 1100, 1165
AgsI TTSAA 5 cut(s) 85, 290, 353, 440, 778
AjnI CCWGG 2 cut(s) 639, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
Alw21I GWGCWC 1 cut(s) 1341
Alw26I GTCTC 2 cut(s) 852, 909
Alw44I GTGCAC 1 cut(s) 1337
AlwI GGATC 4 cut(s) 436, 1057, 1132, 1258
AlwNI CAGNNNCTG 1 cut(s) 1196
AoxI GGCC 8 cut(s) 72, 580, 637, 696, 780, 1080, 1167, 1357
ApaLI GTGCAC 1 cut(s) 1337
ApeKI GCWGC 6 cut(s) 199, 1040, 1043, 1193, 1196, 1393
Asp718I GGTACC 1 cut(s) 609
AspA2I CCTAGG 1 cut(s) 1234
AspS9I GGNCC 5 cut(s) 580, 665, 696, 1103, 1168
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 4 cut(s) 607, 682, 1072, 1357
AvaII GGWCC 2 cut(s) 665, 1103
AvrII CCTAGG 1 cut(s) 1234
BaeGI GKGCMC 1 cut(s) 1341
BalI TGGCCA 2 cut(s) 639, 1082
BanI GGYRCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 1223
Bbv12I GWGCWC 1 cut(s) 1341
BbvI GCAGC 6 cut(s) 211, 1052, 1055, 1180, 1183, 1380
BccI CCATC 6 cut(s) 59, 107, 356, 1091, 1168, 1236
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 2 cut(s) 641, 1166
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 2 cut(s) 852, 909
BfaI CTAG 2 cut(s) 1133, 1235
BfmI CTRYAG 1 cut(s) 559
BisI GCNGC 8 cut(s) 200, 1041, 1044, 1194, 1197, 1391, 1394, 1397
BlnI CCTAGG 1 cut(s) 1234
BlsI GCNGC 8 cut(s) 201, 1042, 1045, 1195, 1198, 1392, 1395, 1398
Bme1390I CCNGG 3 cut(s) 641, 694, 1166
Bme18I GGWCC 2 cut(s) 665, 1103
BmgT120I GGNCC 5 cut(s) 580, 665, 696, 1103, 1168
BmiI GGNNCC 2 cut(s) 611, 697
BmrFI CCNGG 3 cut(s) 641, 694, 1166
BmsI GCATC 2 cut(s) 121, 842
BpmI CTGGAG 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 694
BsaBI GATNNNNATC 1 cut(s) 1067
BsaJI CCNNGG 5 cut(s) 634, 693, 1164, 1234, 1401
BsaXI ACNNNNNCTCC 2 cut(s) 1408, 1438
Bsc4I CCNNNNNNNGG 4 cut(s) 640, 646, 1100, 1165
Bse1I ACTGG 3 cut(s) 343, 386, 946
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 1 cut(s) 1067
BseBI CCWGG 2 cut(s) 641, 1166
BseDI CCNNGG 5 cut(s) 634, 693, 1164, 1234, 1401
BseGI GGATG 6 cut(s) 118, 339, 939, 1155, 1160, 1247
BseJI GATNNNNATC 1 cut(s) 1067
BseLI CCNNNNNNNGG 4 cut(s) 640, 646, 1100, 1165
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 3 cut(s) 343, 386, 946
BseRI GAGGAG 4 cut(s) 884, 1416, 1419, 1422
BseSI GKGCMC 1 cut(s) 1341
BseXI GCAGC 6 cut(s) 211, 1052, 1055, 1180, 1183, 1380
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 394
BshFI GGCC 8 cut(s) 74, 582, 639, 698, 782, 1082, 1169, 1359
BshNI GGYRCC 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 1341
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 1 cut(s) 738
BslI CCNNNNNNNGG 4 cut(s) 640, 646, 1100, 1165
BsmAI GTCTC 2 cut(s) 852, 909
BsmFI GGGAC 1 cut(s) 738
BsmI GAATGC 3 cut(s) 213, 1022, 1213
BsnI GGCC 8 cut(s) 74, 582, 639, 698, 782, 1082, 1169, 1359
Bsp1286I GDGCHC 2 cut(s) 1223, 1341
Bsp143I GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
Bsp19I CCATGG 2 cut(s) 634, 1401
BspACI CCGC 5 cut(s) 1388, 1391, 1397, 1422, 1438
BspANI GGCC 8 cut(s) 74, 582, 639, 698, 782, 1082, 1169, 1359
BspCNI CTCAG 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 611, 697
BspPI GGATC 4 cut(s) 436, 1057, 1132, 1258
BspT107I GGYRCC 1 cut(s) 609
BsrBI CCGCTC 1 cut(s) 1424
BsrDI GCAATG 1 cut(s) 618
BsrI ACTGG 3 cut(s) 343, 386, 946
BssECI CCNNGG 5 cut(s) 634, 693, 1164, 1234, 1401
BssMI GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
BssT1I CCWWGG 3 cut(s) 634, 1234, 1401
Bst2UI CCWGG 2 cut(s) 641, 1166
Bst4CI ACNGT 5 cut(s) 31, 535, 739, 1120, 1147
Bst6I CTCTTC 2 cut(s) 230, 1367
BstC8I GCNNGC 6 cut(s) 92, 520, 753, 970, 1010, 1321
BstDEI CTNAG 2 cut(s) 672, 768
BstDSI CCRYGG 2 cut(s) 634, 1401
BstF5I GGATG 6 cut(s) 118, 339, 939, 1155, 1160, 1247
BstKTI GATC 7 cut(s) 431, 747, 1065, 1127, 1190, 1253, 1347
BstMAI GTCTC 2 cut(s) 852, 909
BstMBI GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
BstMWI GCNNNNNNNGC 7 cut(s) 87, 131, 181, 208, 249, 524, 1396
BstNI CCWGG 2 cut(s) 641, 1166
BstNSI RCATGY 4 cut(s) 731, 755, 972, 1012
BstSCI CCNGG 3 cut(s) 639, 692, 1164
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 1341
BstV1I GCAGC 6 cut(s) 211, 1052, 1055, 1180, 1183, 1380
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 428
BsuRI GGCC 8 cut(s) 74, 582, 639, 698, 782, 1082, 1169, 1359
BtgI CCRYGG 2 cut(s) 634, 1401
BtsCI GGATG 6 cut(s) 118, 339, 939, 1155, 1160, 1247
BtsI GCAGTG 3 cut(s) 600, 846, 1218
BtsIMutI CAGTG 8 cut(s) 36, 350, 379, 531, 600, 815, 846, 1218
Cac8I GCNNGC 6 cut(s) 92, 520, 753, 970, 1010, 1321
CaiI CAGNNNCTG 1 cut(s) 1196
Cfr13I GGNCC 5 cut(s) 580, 665, 696, 1103, 1168
Csp6I GTAC 2 cut(s) 187, 610
CviQI GTAC 2 cut(s) 187, 610
DdeI CTNAG 2 cut(s) 672, 768
DpnI GATC 7 cut(s) 430, 746, 1064, 1126, 1189, 1252, 1346
DpnII GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
DraIII CACNNNGTG 1 cut(s) 1371
DrdI GACNNNNNNGTC 1 cut(s) 923
DseDI GACNNNNNNGTC 1 cut(s) 923
EaeI YGGCCR 2 cut(s) 637, 1080
Eam1104I CTCTTC 2 cut(s) 230, 1367
EarI CTCTTC 2 cut(s) 230, 1367
EciI GGCGGA 2 cut(s) 1377, 1427
Eco130I CCWWGG 3 cut(s) 634, 1234, 1401
Eco24I GRGCYC 1 cut(s) 1223
Eco47I GGWCC 2 cut(s) 665, 1103
Eco57I CTGAAG 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 639, 1164
EcoT14I CCWWGG 3 cut(s) 634, 1234, 1401
EcoT22I ATGCAT 2 cut(s) 753, 1014
EcoT38I GRGCYC 1 cut(s) 1223
ErhI CCWWGG 3 cut(s) 634, 1234, 1401
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 738
FblI GTMKAC 1 cut(s) 1149
Fnu4HI GCNGC 8 cut(s) 200, 1041, 1044, 1194, 1197, 1391, 1394, 1397
FokI GGATG 6 cut(s) 125, 326, 926, 1142, 1147, 1254
FriOI GRGCYC 1 cut(s) 1223
Fsp4HI GCNGC 8 cut(s) 200, 1041, 1044, 1194, 1197, 1391, 1394, 1397
FspBI CTAG 2 cut(s) 1133, 1235
GluI GCNGC 8 cut(s) 200, 1041, 1044, 1194, 1197, 1391, 1394, 1397
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 8 cut(s) 74, 582, 639, 698, 782, 1082, 1169, 1359
HapII CCGG 1 cut(s) 693
HinfI GANTC 4 cut(s) 5, 220, 1230, 1305
HpaII CCGG 1 cut(s) 693
HphI GGTGA 4 cut(s) 607, 682, 1072, 1357
Hpy166II GTNNAC 2 cut(s) 1150, 1339
Hpy188I TCNGA 6 cut(s) 13, 329, 515, 669, 771, 914
Hpy188III TCNNGA 3 cut(s) 85, 359, 485
Hpy8I GTNNAC 2 cut(s) 1150, 1339
HpyAV CCTTC 5 cut(s) 64, 555, 637, 833, 919
HpyCH4III ACNGT 5 cut(s) 31, 535, 739, 1120, 1147
HpyCH4IV ACGT 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 131, 181, 208, 249, 524, 1396
HpyF3I CTNAG 2 cut(s) 672, 768
HpySE526I ACGT 1 cut(s) 390
KpnI GGTACC 1 cut(s) 613
Kzo9I GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
LmnI GCTCC 2 cut(s) 515, 1429
Lsp1109I GCAGC 6 cut(s) 211, 1052, 1055, 1180, 1183, 1380
LweI GCATC 2 cut(s) 121, 842
MaeI CTAG 2 cut(s) 1133, 1235
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 733, 1373
MalI GATC 7 cut(s) 430, 746, 1064, 1126, 1189, 1252, 1346
MbiI CCGCTC 1 cut(s) 1424
MboI GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
MboII GAAGA 5 cut(s) 217, 410, 502, 1081, 1354
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 1223, 1341
MlsI TGGCCA 2 cut(s) 639, 1082
MluCI AATT 3 cut(s) 43, 318, 1111
MluNI TGGCCA 2 cut(s) 639, 1082
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 4 cut(s) 236, 692, 903, 1102
Mox20I TGGCCA 2 cut(s) 639, 1082
Mph1103I ATGCAT 2 cut(s) 753, 1014
MscI TGGCCA 2 cut(s) 639, 1082
MseI TTAA 4 cut(s) 405, 870, 932, 1410
MslI CAYNNNNRTG 2 cut(s) 932, 1007
Msp20I TGGCCA 2 cut(s) 639, 1082
MspA1I CMGCKG 4 cut(s) 144, 202, 1193, 1393
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 3 cut(s) 641, 694, 1166
Mva1269I GAATGC 3 cut(s) 213, 1022, 1213
MvaI CCWGG 2 cut(s) 641, 1166
MwoI GCNNNNNNNGC 7 cut(s) 87, 131, 181, 208, 249, 524, 1396
NciI CCSGG 1 cut(s) 694
NcoI CCATGG 2 cut(s) 634, 1401
NdeII GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
NlaIV GGNNCC 2 cut(s) 611, 697
NsiI ATGCAT 2 cut(s) 753, 1014
NspI RCATGY 4 cut(s) 731, 755, 972, 1012
PaeI GCATGC 3 cut(s) 755, 972, 1012
PctI GAATGC 3 cut(s) 213, 1022, 1213
PfeI GAWTC 3 cut(s) 220, 1230, 1305
PflMI CCANNNNNTGG 1 cut(s) 1100
PkrI GCNGC 8 cut(s) 201, 1042, 1045, 1195, 1198, 1392, 1395, 1398
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 953
Psp6I CCWGG 2 cut(s) 639, 1164
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 2 cut(s) 639, 1164
PspN4I GGNNCC 2 cut(s) 611, 697
PspPI GGNCC 5 cut(s) 580, 665, 696, 1103, 1168
PstNI CAGNNNCTG 1 cut(s) 1196
PsuI RGATCY 1 cut(s) 428
PvuII CAGCTG 3 cut(s) 144, 202, 1193
RsaI GTAC 2 cut(s) 188, 611
RsaNI GTAC 2 cut(s) 187, 610
RseI CAYNNNNRTG 2 cut(s) 932, 1007
SaqAI TTAA 4 cut(s) 405, 870, 932, 1410
SatI GCNGC 8 cut(s) 200, 1041, 1044, 1194, 1197, 1391, 1394, 1397
Sau3AI GATC 7 cut(s) 428, 744, 1062, 1124, 1187, 1250, 1344
Sau96I GGNCC 5 cut(s) 580, 665, 696, 1103, 1168
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 641, 694, 1166
SduI GDGCHC 2 cut(s) 1223, 1341
SfaNI GCATC 2 cut(s) 121, 842
SfcI CTRYAG 1 cut(s) 559
SinI GGWCC 2 cut(s) 665, 1103
SmiMI CAYNNNNRTG 2 cut(s) 932, 1007
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SphI GCATGC 3 cut(s) 755, 972, 1012
Sse9I AATT 3 cut(s) 43, 318, 1111
SsiI CCGC 5 cut(s) 1388, 1391, 1397, 1422, 1438
SspMI CTAG 2 cut(s) 1133, 1235
StyD4I CCNGG 3 cut(s) 639, 692, 1164
StyI CCWWGG 3 cut(s) 634, 1234, 1401
TaaI ACNGT 5 cut(s) 31, 535, 739, 1120, 1147
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 1347
TasI AATT 3 cut(s) 43, 318, 1111
TauI GCSGC 2 cut(s) 1393, 1399
TfiI GAWTC 3 cut(s) 220, 1230, 1305
Tru1I TTAA 4 cut(s) 405, 870, 932, 1410
Tru9I TTAA 4 cut(s) 405, 870, 932, 1410
TscAI CASTG 8 cut(s) 36, 350, 386, 538, 607, 822, 846, 1218
TseI GCWGC 6 cut(s) 199, 1040, 1043, 1193, 1196, 1393
TspDTI ATGAA 2 cut(s) 537, 1029
TspRI CASTG 8 cut(s) 36, 350, 386, 538, 607, 822, 846, 1218
Van91I CCANNNNNTGG 1 cut(s) 1100
VneI GTGCAC 1 cut(s) 1337
VpaK11BI GGWCC 2 cut(s) 665, 1103
XceI RCATGY 4 cut(s) 731, 755, 972, 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 1234
XmiI GTMKAC 1 cut(s) 1149
XspI CTAG 2 cut(s) 1133, 1235
Zsp2I ATGCAT 2 cut(s) 753, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.