AT2G21240

basic pentacysteine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005753
Physical Location & Seq
Reverse (-)
9101277 .. 9103141
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21240.2

Sequence Viewer

Length: 891 bp
ATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTTCAAAGGTGCACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAATGCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACATGAAAGAAATCAAGCTGTCTCTGCTAAAAAGGAAGCTGTCGCTGCTCGGGACGAAGCGCTTCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAATGCTTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGTGTGTTGATGGAGATGATTGTTTTGGTATTGGGGAACCCCACAAACTTGAAGTCTTCCCTTTGTCAACTATTCCGCCTGAGGTTACAAACACGAAGGTGGTGAACAAAAGGAAGAAAGAGAACAAGCAGGGACTATCAAAGGTGAAAAAAGTGGGTGAAGATCTGAACCGTCGAGTTCCTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAGTCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGGCTCTACGCGTCAGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAACCACCTTATCCCAGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGAGCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTATCAGCAGAAGGATATGATCTCTCGTGTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCAAGTAG

Protein Analysis

296

Amino Acids

33.31

Weight (kDa)

9.23

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAGA_bind PF06217 1 - 296 1.2e-109 GAGA binding protein-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 768
AccII CGCG 2 cut(s) 31, 643
AciI CCGC 7 cut(s) 31, 422, 669, 719, 753, 768, 871
AclI AACGTT 1 cut(s) 774
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 168, 615
AfeI AGCGCT 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 641
AgsI TTSAA 5 cut(s) 37, 52, 305, 398, 580
AjnI CCWGG 1 cut(s) 532
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 4 cut(s) 185, 206, 248, 269
AluI AGCT 4 cut(s) 185, 206, 248, 269
Alw21I GWGCWC 2 cut(s) 61, 632
Alw26I GTCTC 4 cut(s) 150, 193, 326, 593
Alw44I GTGCAC 2 cut(s) 57, 628
Ama87I CYCGRG 2 cut(s) 216, 781
Aor51HI AGCGCT 1 cut(s) 228
ApaLI GTGCAC 2 cut(s) 57, 628
ApeKI GCWGC 4 cut(s) 161, 212, 296, 687
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 31, 229
AsuHPI GGTGA 5 cut(s) 130, 460, 502, 515, 580
AvaI CYCGRG 2 cut(s) 216, 781
AxyI CCTNAGG 1 cut(s) 426
BaeGI GKGCMC 2 cut(s) 61, 632
BauI CACGAG 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 61, 632
BbvI GCAGC 4 cut(s) 148, 199, 283, 674
BccI CCATC 3 cut(s) 149, 350, 742
BceAI ACGGC 1 cut(s) 780
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 150, 193, 326, 593
BfaI CTAG 2 cut(s) 546, 855
BfoI RGCGCY 1 cut(s) 230
BfuI GTATCC 1 cut(s) 720
BglII AGATCT 1 cut(s) 508
BisI GCNGC 5 cut(s) 162, 213, 297, 670, 688
BlsI GCNGC 5 cut(s) 163, 214, 298, 671, 689
Bme1390I CCNGG 1 cut(s) 534
BmeT110I CYCGRG 2 cut(s) 216, 781
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 534
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 2 cut(s) 97, 714
BmuI ACTGGG 1 cut(s) 700
BpiI GAAGAC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 727, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 706
Bse21I CCTNAGG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 141, 753
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 4 cut(s) 141, 246, 417, 805
BseNI ACTGG 1 cut(s) 706
BseSI GKGCMC 2 cut(s) 61, 632
BseXI GCAGC 4 cut(s) 148, 199, 283, 674
BseYI CCCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 673
Bsh1236I CGCG 2 cut(s) 31, 643
BsiHKAI GWGCWC 2 cut(s) 61, 632
BsiHKCI CYCGRG 2 cut(s) 216, 781
BslFI GGGAC 4 cut(s) 233, 492, 572, 877
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 4 cut(s) 150, 193, 326, 593
BsmBI CGTCTC 2 cut(s) 150, 593
BsmFI GGGAC 4 cut(s) 233, 492, 572, 877
BsmI GAATGC 1 cut(s) 739
BsoBI CYCGRG 2 cut(s) 216, 781
Bsp1286I GDGCHC 2 cut(s) 61, 632
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 4 cut(s) 132, 508, 817, 835
BspACI CCGC 7 cut(s) 31, 422, 669, 719, 753, 768, 871
BspCNI CTCAG 4 cut(s) 142, 247, 418, 804
BspFNI CGCG 2 cut(s) 31, 643
BspLI GGNNCC 1 cut(s) 384
BspQI GCTCTTC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 166
BsrI ACTGG 1 cut(s) 706
BssMI GATC 4 cut(s) 132, 508, 817, 835
BssSI CACGAG 1 cut(s) 823
Bst2BI CACGAG 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 518, 563
Bst6I CTCTTC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 5 cut(s) 150, 255, 426, 583, 791
BstF5I GGATG 2 cut(s) 141, 753
BstFNI CGCG 2 cut(s) 31, 643
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 2 cut(s) 31, 229
BstKTI GATC 4 cut(s) 135, 511, 820, 838
BstMAI GTCTC 4 cut(s) 150, 193, 326, 593
BstMBI GATC 4 cut(s) 132, 508, 817, 835
BstMWI GCNNNNNNNGC 4 cut(s) 37, 191, 212, 296
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstSLI GKGCMC 2 cut(s) 61, 632
BstUI CGCG 2 cut(s) 31, 643
BstV1I GCAGC 4 cut(s) 148, 199, 283, 674
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu36I CCTNAGG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 720
BtsCI GGATG 2 cut(s) 141, 753
BtsIMutI CAGTG 1 cut(s) 653
Cac8I GCNNGC 1 cut(s) 674
CfoI GCGC 2 cut(s) 31, 229
CseI GACGC 2 cut(s) 167, 632
Csp6I GTAC 2 cut(s) 167, 614
CspCI CAANNNNNGTGG 2 cut(s) 50, 85
CviAII CATG 4 cut(s) 136, 170, 311, 619
CviJI RGCY 9 cut(s) 40, 185, 206, 248, 269, 636, 672, 795, 854
CviKI_1 RGCY 9 cut(s) 40, 185, 206, 248, 269, 636, 672, 795, 854
CviQI GTAC 2 cut(s) 167, 614
DdeI CTNAG 5 cut(s) 150, 255, 426, 583, 791
DpnI GATC 4 cut(s) 134, 510, 819, 837
DpnII GATC 4 cut(s) 132, 508, 817, 835
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 411
Eco47III AGCGCT 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 216, 781
EcoRII CCWGG 1 cut(s) 532
Esp3I CGTCTC 2 cut(s) 150, 593
FaeI CATG 4 cut(s) 139, 173, 314, 622
FaqI GGGAC 4 cut(s) 233, 492, 572, 877
FatI CATG 4 cut(s) 135, 169, 310, 618
Fnu4HI GCNGC 5 cut(s) 162, 213, 297, 670, 688
FokI GGATG 2 cut(s) 128, 760
Fsp4HI GCNGC 5 cut(s) 162, 213, 297, 670, 688
FspBI CTAG 2 cut(s) 546, 855
GlaI GCGC 2 cut(s) 30, 228
GluI GCNGC 5 cut(s) 162, 213, 297, 670, 688
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 230
HgaI GACGC 2 cut(s) 167, 632
HhaI GCGC 2 cut(s) 31, 229
Hin1II CATG 4 cut(s) 139, 173, 314, 622
Hin6I GCGC 2 cut(s) 29, 227
HinP1I GCGC 2 cut(s) 29, 227
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 1 cut(s) 79
HphI GGTGA 5 cut(s) 130, 460, 502, 515, 580
Hpy166II GTNNAC 4 cut(s) 59, 414, 451, 630
Hpy188I TCNGA 4 cut(s) 93, 256, 513, 747
Hpy188III TCNNGA 5 cut(s) 218, 546, 566, 781, 783
Hpy8I GTNNAC 4 cut(s) 59, 414, 451, 630
Hpy99I CGWCG 1 cut(s) 522
HpyAV CCTTC 3 cut(s) 436, 601, 803
HpyCH4III ACNGT 2 cut(s) 518, 563
HpyCH4IV ACGT 2 cut(s) 238, 774
HpyCH4V TGCA 3 cut(s) 59, 630, 690
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 191, 212, 296
HpyF3I CTNAG 5 cut(s) 150, 255, 426, 583, 791
HpySE526I ACGT 2 cut(s) 238, 774
Hsp92II CATG 4 cut(s) 139, 173, 314, 622
HspAI GCGC 2 cut(s) 29, 227
Kzo9I GATC 4 cut(s) 132, 508, 817, 835
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 4 cut(s) 148, 199, 283, 674
LweI GCATC 2 cut(s) 97, 714
MaeI CTAG 2 cut(s) 546, 855
MaeII ACGT 2 cut(s) 238, 774
MaeIII GTNAC 4 cut(s) 239, 430, 586, 650
MalI GATC 4 cut(s) 134, 510, 819, 837
MbiI CCGCTC 1 cut(s) 768
MboI GATC 4 cut(s) 132, 508, 817, 835
MboII GAAGA 5 cut(s) 142, 293, 394, 472, 518
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 61, 632
MluI ACGCGT 1 cut(s) 641
MnlI CCTC 2 cut(s) 421, 729
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 96, 840
MslI CAYNNNNRTG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 534
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 2 cut(s) 31, 643
MwoI GCNNNNNNNGC 4 cut(s) 37, 191, 212, 296
NdeII GATC 4 cut(s) 132, 508, 817, 835
NlaIII CATG 4 cut(s) 139, 173, 314, 622
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 239, 586
OliI CACNNNNGTG 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 5 cut(s) 163, 214, 298, 671, 689
Psp1406I AACGTT 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 384
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 2 cut(s) 168, 615
RsaNI GTAC 2 cut(s) 167, 614
RseI CAYNNNNRTG 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 2 cut(s) 96, 840
SatI GCNGC 5 cut(s) 162, 213, 297, 670, 688
Sau3AI GATC 4 cut(s) 132, 508, 817, 835
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 2 cut(s) 61, 632
SfaNI GCATC 2 cut(s) 97, 714
Sfr274I CTCGAG 1 cut(s) 781
SlaI CTCGAG 1 cut(s) 781
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
SsiI CCGC 7 cut(s) 31, 422, 669, 719, 753, 768, 871
SspMI CTAG 2 cut(s) 546, 855
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 518, 563
TaiI ACGT 2 cut(s) 241, 777
TaqI TCGA 3 cut(s) 520, 594, 782
TatI WGTACW 1 cut(s) 166
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 96, 840
Tru9I TTAA 2 cut(s) 96, 840
TscAI CASTG 1 cut(s) 653
TseFI GTSAC 2 cut(s) 239, 586
TseI GCWGC 4 cut(s) 161, 212, 296, 687
Tsp45I GTSAC 2 cut(s) 239, 586
TspDTI ATGAA 3 cut(s) 137, 186, 327
TspRI CASTG 1 cut(s) 653
VneI GTGCAC 2 cut(s) 57, 628
XbaI TCTAGA 1 cut(s) 545
XhoI CTCGAG 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 546, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.