Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Reverse (-)

11615310 .. 11620804

Gene Structure 5495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G082900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCACTCAGCAGATAGCAGGAGAGGAGGACAGACACTTGCTGTTAATAATTCAAAAATGGATGATGGTCGGCAACATGAAAATGGGAGACATAAGATGGACTATTACAGAGGGGCGGCCTCTCCGTGGAATATGGCGACCCAGCAGCAAGCGAAGGAACCAAATGCCCTAGTCATGAACAAGAAGATCATGTCCATTATTGCTGAGAGGGATGCTGCTATTCGAGAACGGAATGCAGCACTTACTGAAAAGAATGAAGCCTTAGCTGCAAGAGATGAGGCTCTCCGTCAGCGAGATGAGGCACTTGCTCAGCGTGATACTGCCATGATGGAACGAGACAATGCCTTTGCAGCCCTTCATATGCGGGACAATGCTGTGAACTTCCCATTGGGTGGTGGAGTTCAACGTGGAGCCAAGCGCCTGCACCACCCTTCAAACCATTCAGTTACACTGGCTGAGGCTCATTACAGCACAAAAGATATGCATATAACTGATGCCTTCCCTATTTCAGTTATATCTGCTGAAGCTGTCAAGTCACGTCAGACAAAGCGAGCAAAGGAGAACAAGGCATCCAGGGCATCAAAGCCGTCACGAAAGAAAGTAGGCGAAGATTTGAATAGGCAGGCTTCATCTGATGGGATAAAGTATAAATCAGAGTGGGATACTCATGATTTGGGATTGAATCTTGTCTCTTTTGATGAGTCTACAATGCCAGTGCCAGTTTGCTCATGCACTGGAGTACCACGCCAGTGCTACAAATGGGGGAATGGTGGGTGGCAGTCATCTTGTTGCACCACCCATATGTCCATGTATCCACTACCGCAGATGCCAAATAAGCGCCATGCCCGGATGGGTGGGCGCAAGATGAGTGGAAGTGTTTTTACAAGATTGCTCAGTCGGCTAGCAGCAGATGGTCATGATCTGTCAATACCACTGGATCTGAAGGAATACTGGGCCAGACATGGGACAAATCGCTACATAACGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

331

Amino Acids

36.93

Weight (kDa)

9.68

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	704
AciI	CCGC	3 cut(s)	116, 364, 821
AclWI	GGATC	1 cut(s)	945
AcuI	CTGAAG	2 cut(s)	543, 962
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	3 cut(s)	126, 392, 963
AgsI	TTSAA	5 cut(s)	54, 404, 435, 616, 682
AjiI	CACGTC	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	572
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AleI	CACNNNNGTG	1 cut(s)	748
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	2 cut(s)	266, 527
AluI	AGCT	2 cut(s)	266, 527
Alw26I	GTCTC	3 cut(s)	82, 330, 694
AlwI	GGATC	1 cut(s)	945
AoxI	GGCC	2 cut(s)	117, 954
ApeKI	GCWGC	6 cut(s)	145, 215, 236, 266, 350, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	3 cut(s)	420, 840, 861
AspS9I	GGNCC	1 cut(s)	954
AsuC2I	CCSGG	1 cut(s)	847
AsuNHI	GCTAGC	1 cut(s)	901
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BarI	GAAGNNNNNNTAC	2 cut(s)	865, 897
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	6 cut(s)	157, 202, 248, 253, 362, 917
BccI	CCATC	6 cut(s)	59, 91, 322, 629, 844, 905
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	2 cut(s)	655, 822
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	82, 330, 694
BfaI	CTAG	2 cut(s)	170, 902
BfoI	RGCGCY	2 cut(s)	421, 841
BfuI	GTATCC	2 cut(s)	655, 822
BisI	GCNGC	7 cut(s)	117, 146, 216, 237, 267, 351, 906
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	7 cut(s)	118, 147, 217, 238, 268, 352, 907
Bme1390I	CCNGG	2 cut(s)	574, 847
BmgBI	CACGTC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	954
BmiI	GGNNCC	2 cut(s)	159, 412
BmrFI	CCNGG	2 cut(s)	574, 847
BmrI	ACTGGG	1 cut(s)	961
BmsI	GCATC	5 cut(s)	202, 484, 578, 587, 816
BmtI	GCTAGC	1 cut(s)	905
BmuI	ACTGGG	1 cut(s)	961
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	2 cut(s)	262, 456
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	847
BsaJI	CCNNGG	2 cut(s)	125, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 392, 963
Bse1I	ACTGG	7 cut(s)	456, 713, 719, 739, 748, 939, 956
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	125, 573
BseGI	GGATG	4 cut(s)	67, 217, 569, 855
BseLI	CCNNNNNNNGG	3 cut(s)	126, 392, 963
BseMII	CTCAG	5 cut(s)	21, 195, 323, 447, 907
BseNI	ACTGG	7 cut(s)	456, 713, 719, 739, 748, 939, 956
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	6 cut(s)	157, 202, 248, 253, 362, 917
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	119, 956
BsiSI	CCGG	1 cut(s)	847
BslFI	GGGAC	2 cut(s)	380, 979
BslI	CCNNNNNNNGG	3 cut(s)	126, 392, 963
BsmAI	GTCTC	3 cut(s)	82, 330, 694
BsmFI	GGGAC	2 cut(s)	380, 979
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	119, 956
Bsp143I	GATC	4 cut(s)	186, 919, 937, 984
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	116, 364, 821
BspANI	GGCC	2 cut(s)	119, 956
BspCNI	CTCAG	5 cut(s)	20, 196, 322, 448, 906
BspHI	TCATGA	3 cut(s)	174, 667, 916
BspLI	GGNNCC	2 cut(s)	159, 412
BspOI	GCTAGC	1 cut(s)	905
BspPI	GGATC	1 cut(s)	945
BsrI	ACTGG	7 cut(s)	456, 713, 719, 739, 748, 939, 956
BssECI	CCNNGG	2 cut(s)	125, 573
BssMI	GATC	4 cut(s)	186, 919, 937, 984
Bst2UI	CCWGG	1 cut(s)	574
BstC8I	GCNNGC	5 cut(s)	150, 422, 552, 624, 903
BstDEI	CTNAG	6 cut(s)	7, 204, 262, 309, 456, 893
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	67, 217, 569, 855
BstH2I	RGCGCY	2 cut(s)	421, 841
BstHHI	GCGC	3 cut(s)	420, 840, 861
BstKTI	GATC	4 cut(s)	189, 922, 940, 987
BstMAI	GTCTC	3 cut(s)	82, 330, 694
BstMBI	GATC	4 cut(s)	186, 919, 937, 984
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 350, 575, 835, 898
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	572, 845
BstV1I	GCAGC	6 cut(s)	157, 202, 248, 253, 362, 917
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuI	GTATCC	2 cut(s)	655, 822
BsuRI	GGCC	2 cut(s)	119, 956
BtgI	CCRYGG	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	539
BtsCI	GGATG	4 cut(s)	67, 217, 569, 855
BtsIMutI	CAGTG	5 cut(s)	449, 720, 732, 755, 932
Cac8I	GCNNGC	5 cut(s)	150, 422, 552, 624, 903
CciI	TCATGA	3 cut(s)	174, 667, 916
CfoI	GCGC	3 cut(s)	420, 840, 861
Cfr13I	GGNCC	1 cut(s)	954
Csp6I	GTAC	1 cut(s)	740
CspCI	CAANNNNNGTGG	2 cut(s)	850, 885
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	6 cut(s)	7, 204, 262, 309, 456, 893
DpnI	GATC	4 cut(s)	188, 921, 939, 986
DpnII	GATC	4 cut(s)	186, 919, 937, 984
Eco57I	CTGAAG	2 cut(s)	543, 962
EcoRII	CCWGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	486
FaqI	GGGAC	2 cut(s)	380, 979
FauI	CCCGC	1 cut(s)	357
FauNDI	CATATG	2 cut(s)	360, 801
FblI	GTMKAC	1 cut(s)	704
Fnu4HI	GCNGC	7 cut(s)	117, 146, 216, 237, 267, 351, 906
FokI	GGATG	4 cut(s)	74, 224, 556, 862
Fsp4HI	GCNGC	7 cut(s)	117, 146, 216, 237, 267, 351, 906
FspBI	CTAG	2 cut(s)	170, 902
GlaI	GCGC	3 cut(s)	419, 839, 860
GluI	GCNGC	7 cut(s)	117, 146, 216, 237, 267, 351, 906
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	2 cut(s)	421, 841
HaeIII	GGCC	2 cut(s)	119, 956
HapII	CCGG	1 cut(s)	847
HhaI	GCGC	3 cut(s)	420, 840, 861
Hin6I	GCGC	3 cut(s)	418, 838, 859
HinP1I	GCGC	3 cut(s)	418, 838, 859
HinfI	GANTC	2 cut(s)	682, 701
HpaII	CCGG	1 cut(s)	847
Hpy166II	GTNNAC	2 cut(s)	379, 705
Hpy188I	TCNGA	4 cut(s)	543, 634, 655, 942
Hpy188III	TCNNGA	5 cut(s)	175, 224, 591, 668, 917
Hpy8I	GTNNAC	2 cut(s)	379, 705
HpyAV	CCTTC	5 cut(s)	148, 365, 441, 508, 937
HpyCH4IV	ACGT	2 cut(s)	406, 538
HpyCH4V	TGCA	8 cut(s)	4, 236, 269, 350, 424, 484, 732, 792
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 350, 575, 835, 898
HpyF3I	CTNAG	6 cut(s)	7, 204, 262, 309, 456, 893
HpySE526I	ACGT	2 cut(s)	406, 538
HspAI	GCGC	3 cut(s)	418, 838, 859
Kzo9I	GATC	4 cut(s)	186, 919, 937, 984
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	6 cut(s)	157, 202, 248, 253, 362, 917
LweI	GCATC	5 cut(s)	202, 484, 578, 587, 816
MaeI	CTAG	2 cut(s)	170, 902
MaeII	ACGT	2 cut(s)	406, 538
MaeIII	GTNAC	3 cut(s)	445, 534, 588
MalI	GATC	4 cut(s)	188, 921, 939, 986
MboI	GATC	4 cut(s)	186, 919, 937, 984
MboII	GAAGA	2 cut(s)	196, 620
MflI	RGATCY	1 cut(s)	937
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	710
MnlI	CCTC	8 cut(s)	17, 20, 104, 130, 201, 271, 292, 451
Mph1103I	ATGCAT	1 cut(s)	486
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	3 cut(s)	81, 748, 800
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	2 cut(s)	574, 847
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	5 cut(s)	266, 350, 575, 835, 898
NciI	CCSGG	1 cut(s)	847
NdeI	CATATG	2 cut(s)	360, 801
NdeII	GATC	4 cut(s)	186, 919, 937, 984
NheI	GCTAGC	1 cut(s)	901
NlaIV	GGNNCC	2 cut(s)	159, 412
NmuCI	GTSAC	2 cut(s)	534, 588
NsiI	ATGCAT	1 cut(s)	486
OliI	CACNNNNGTG	1 cut(s)	748
PagI	TCATGA	3 cut(s)	174, 667, 916
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	7 cut(s)	118, 147, 217, 238, 268, 352, 907
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Psp6I	CCWGG	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	159, 412
PspPI	GGNCC	1 cut(s)	954
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	3 cut(s)	81, 748, 800
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	7 cut(s)	117, 146, 216, 237, 267, 351, 906
Sau3AI	GATC	4 cut(s)	186, 919, 937, 984
Sau96I	GGNCC	1 cut(s)	954
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	574, 847
SetI	ASST	4 cut(s)	268, 409, 529, 541
SfaNI	GCATC	5 cut(s)	202, 484, 578, 587, 816
SmiMI	CAYNNNNRTG	3 cut(s)	81, 748, 800
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	3 cut(s)	116, 364, 821
SspMI	CTAG	2 cut(s)	170, 902
StyD4I	CCNGG	2 cut(s)	572, 845
TaiI	ACGT	2 cut(s)	409, 541
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	49
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	5 cut(s)	456, 720, 739, 755, 939
TseFI	GTSAC	2 cut(s)	534, 588
TseI	GCWGC	6 cut(s)	145, 215, 236, 266, 350, 905
Tsp45I	GTSAC	2 cut(s)	534, 588
TspDTI	ATGAA	5 cut(s)	93, 191, 270, 347, 618
TspGWI	ACGGA	3 cut(s)	114, 244, 275
TspRI	CASTG	5 cut(s)	456, 720, 739, 755, 939
Van91I	CCANNNNNTGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	704
XspI	CTAG	2 cut(s)	170, 902
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.