Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Forward (+)

9406140 .. 9410308

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGATGGTCGACATGAAAATGGGAGACACAAGCCGGATTACTACAGAGGGGCACCCTCTCCGTGGAACATGACCGCCCAACAGCAAGTAAAGGAACCAAATGCCTTAGTCATGAACAAGAAGATCATGTCCATTATTGCTGAGAGGGATGCTGCAATTCGAGAACGAAATGCTGCAATTTCAGAAAAGAATGAAGCCTTGGCCGCCAGAGATGAAGCTCTGCGACAGCGCGATGAGGCATTTTCTCAGCGTGATACTGCCCTTATGGAACGAGACAATGCCTTTGCCGCCTTTCATATCCGGGATAATTCCATGAACTTCCCATTGGGTGGTGGTGCTCAACGTGGATCTAAGCGCATGCACTACCCTTCACATCATCCAGTTAACATGGCTGATGGTCCTTACAGCACAAAAGATGTGCCTATAACTGAAGCCTTCCCTATTTCAGTATTATCTGCCGAAGCTATCAAGTCACGGCAGACAAAACGGTCAAAGCAGAATAAGGCATCTAGGGCATCAAAGCCGTCAAGAAAGAAAGTAGGTGAAGACTTGAACAGGCAGGCTTCGACCGATGGGATAAAGTACAGATCTGAGTGGGACACTCAGGATTTAGGCTTAAATCTTGTCTCGTTTGACGAGACTACAATGCCTGTGCCAGTTTGCTCATGTACTGGAATGCCGCGGCAGTGCTACAAATGGGGGAATGGTGGGTGGCAGTCATCTTGTTGCACCACCAATATGTCGATGTATCCACTACCCCAAATGCCAAATAAGCGCCACGCGCGGATGGGTGGGCGAAAAATGAGCGGAAGTGTTTTTACTAGATTGCTCAGTCGGCTAGCAGCTGAAGGCCACGATCTATCAGTACCACTGGATCTGAAGGAATACTGGGCCAGACATGGGACAAATCGCTACATAACAATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

311

Amino Acids

34.95

Weight (kDa)

9.64

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	2 - 310	1.9e-114	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	4 cut(s)	234, 685, 785, 787
AciI	CCGC	7 cut(s)	78, 207, 291, 683, 685, 787, 810
AclWI	GGATC	2 cut(s)	358, 885
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	3 cut(s)	453, 870, 902
AfaI	GTAC	3 cut(s)	587, 673, 870
AfiI	CCNNNNNNNGG	3 cut(s)	66, 332, 903
AgsI	TTSAA	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	4 cut(s)	185, 217, 311, 343
AluBI	AGCT	3 cut(s)	221, 467, 848
AluI	AGCT	3 cut(s)	221, 467, 848
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	4 cut(s)	22, 270, 634, 635
AlwI	GGATC	2 cut(s)	358, 885
AoxI	GGCC	3 cut(s)	204, 853, 894
ApeKI	GCWGC	3 cut(s)	155, 176, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	4 cut(s)	234, 360, 780, 787
AspS9I	GGNCC	2 cut(s)	401, 894
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	805, 837
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	3 cut(s)	142, 163, 857
BccI	CCATC	4 cut(s)	2, 392, 569, 784
BceAI	ACGGC	2 cut(s)	494, 511
BciVI	GTATCC	1 cut(s)	762
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	4 cut(s)	22, 270, 634, 635
BfaI	CTAG	3 cut(s)	513, 825, 842
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	781
BfuI	GTATCC	1 cut(s)	762
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	7 cut(s)	156, 177, 207, 291, 683, 686, 846
BlsI	GCNGC	7 cut(s)	157, 178, 208, 292, 684, 687, 847
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	401, 894
BmiI	GGNNCC	2 cut(s)	57, 99
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	3 cut(s)	142, 518, 527
BmtI	GCTAGC	1 cut(s)	845
BmuI	ACTGGG	1 cut(s)	901
BpiI	GAAGAC	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	65, 201, 683
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 332, 903
Bse1I	ACTGG	5 cut(s)	383, 659, 679, 879, 896
BseDI	CCNNGG	3 cut(s)	65, 201, 683
BseGI	GGATG	4 cut(s)	10, 157, 379, 795
BseLI	CCNNNNNNNGG	3 cut(s)	66, 332, 903
BseMII	CTCAG	5 cut(s)	135, 263, 585, 620, 847
BseNI	ACTGG	5 cut(s)	383, 659, 679, 879, 896
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	142, 163, 857
Bsh1236I	CGCG	4 cut(s)	234, 685, 785, 787
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	206, 855, 896
BshNI	GGYRCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	38, 304
BslFI	GGGAC	2 cut(s)	614, 919
BslI	CCNNNNNNNGG	3 cut(s)	66, 332, 903
BsmAI	GTCTC	4 cut(s)	22, 270, 634, 635
BsmFI	GGGAC	2 cut(s)	614, 919
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	3 cut(s)	206, 855, 896
Bsp1286I	GDGCHC	2 cut(s)	58, 343
Bsp143I	GATC	5 cut(s)	126, 350, 590, 859, 877
BspACI	CCGC	7 cut(s)	78, 207, 291, 683, 685, 787, 810
BspANI	GGCC	3 cut(s)	206, 855, 896
BspCNI	CTCAG	5 cut(s)	136, 262, 586, 619, 846
BspFNI	CGCG	4 cut(s)	234, 685, 785, 787
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	57, 99
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	2 cut(s)	358, 885
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	810
BsrI	ACTGG	5 cut(s)	383, 659, 679, 879, 896
BssECI	CCNNGG	3 cut(s)	65, 201, 683
BssMI	GATC	5 cut(s)	126, 350, 590, 859, 877
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	492
BstC8I	GCNNGC	3 cut(s)	362, 564, 843
BstDEI	CTNAG	7 cut(s)	109, 144, 249, 354, 594, 606, 833
BstDSI	CCRYGG	2 cut(s)	65, 683
BstF5I	GGATG	4 cut(s)	10, 157, 379, 795
BstFNI	CGCG	4 cut(s)	234, 685, 785, 787
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	4 cut(s)	234, 360, 780, 787
BstKTI	GATC	5 cut(s)	129, 353, 593, 862, 880
BstMAI	GTCTC	4 cut(s)	22, 270, 634, 635
BstMBI	GATC	5 cut(s)	126, 350, 590, 859, 877
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 290, 515, 775, 784, 838
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	4 cut(s)	234, 685, 785, 787
BstV1I	GCAGC	3 cut(s)	142, 163, 857
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	3 cut(s)	350, 590, 877
BstYI	RGATCY	3 cut(s)	350, 590, 877
BsuI	GTATCC	1 cut(s)	762
BsuRI	GGCC	3 cut(s)	206, 855, 896
BtgI	CCRYGG	2 cut(s)	65, 683
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	10, 157, 379, 795
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	695, 872
Cac8I	GCNNGC	3 cut(s)	362, 564, 843
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	4 cut(s)	234, 360, 780, 787
Cfr13I	GGNCC	2 cut(s)	401, 894
Cfr42I	CCGCGG	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	586, 672, 869
CviAII	CATG	9 cut(s)	17, 73, 115, 130, 316, 361, 391, 669, 902
CviQI	GTAC	3 cut(s)	586, 672, 869
DdeI	CTNAG	7 cut(s)	109, 144, 249, 354, 594, 606, 833
DpnI	GATC	5 cut(s)	128, 352, 592, 861, 879
DpnII	GATC	5 cut(s)	126, 350, 590, 859, 877
DrdI	GACNNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	3 cut(s)	453, 870, 902
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	9 cut(s)	20, 76, 118, 133, 319, 364, 394, 672, 905
FaqI	GGGAC	2 cut(s)	614, 919
FatI	CATG	9 cut(s)	16, 72, 114, 129, 315, 360, 390, 668, 901
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	7 cut(s)	156, 177, 207, 291, 683, 686, 846
FokI	GGATG	4 cut(s)	17, 164, 366, 802
Fsp4HI	GCNGC	7 cut(s)	156, 177, 207, 291, 683, 686, 846
FspBI	CTAG	3 cut(s)	513, 825, 842
GlaI	GCGC	4 cut(s)	233, 359, 779, 786
GluI	GCNGC	7 cut(s)	156, 177, 207, 291, 683, 686, 846
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	3 cut(s)	206, 855, 896
HapII	CCGG	2 cut(s)	38, 304
HhaI	GCGC	4 cut(s)	234, 360, 780, 787
Hin1II	CATG	9 cut(s)	20, 76, 118, 133, 319, 364, 394, 672, 905
Hin6I	GCGC	4 cut(s)	232, 358, 778, 785
HinP1I	GCGC	4 cut(s)	232, 358, 778, 785
HincII	GTYRAC	2 cut(s)	14, 388
HindII	GTYRAC	2 cut(s)	14, 388
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	38, 304
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	14, 388
Hpy188I	TCNGA	3 cut(s)	187, 595, 882
Hpy188III	TCNNGA	4 cut(s)	115, 164, 531, 608
Hpy8I	GTNNAC	2 cut(s)	14, 388
HpyAV	CCTTC	4 cut(s)	381, 448, 845, 877
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	158, 179, 364, 732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 290, 515, 775, 784, 838
HpyF3I	CTNAG	7 cut(s)	109, 144, 249, 354, 594, 606, 833
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	9 cut(s)	20, 76, 118, 133, 319, 364, 394, 672, 905
HspAI	GCGC	4 cut(s)	232, 358, 778, 785
KspAI	GTTAAC	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	686
Kzo9I	GATC	5 cut(s)	126, 350, 590, 859, 877
Lsp1109I	GCAGC	3 cut(s)	142, 163, 857
LweI	GCATC	3 cut(s)	142, 518, 527
MaeI	CTAG	3 cut(s)	513, 825, 842
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	5 cut(s)	128, 352, 592, 861, 879
MbiI	CCGCTC	1 cut(s)	810
MboI	GATC	5 cut(s)	126, 350, 590, 859, 877
MboII	GAAGA	2 cut(s)	136, 560
MflI	RGATCY	3 cut(s)	350, 590, 877
MhlI	GDGCHC	2 cut(s)	58, 343
MluCI	AATT	3 cut(s)	159, 180, 310
MnlI	CCTC	4 cut(s)	44, 70, 141, 232
MseI	TTAA	2 cut(s)	387, 620
MslI	CAYNNNNRTG	2 cut(s)	21, 740
MspA1I	CMGCKG	2 cut(s)	685, 848
MspI	CCGG	2 cut(s)	38, 304
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	684
MvnI	CGCG	4 cut(s)	234, 685, 785, 787
MwoI	GCNNNNNNNGC	6 cut(s)	206, 290, 515, 775, 784, 838
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	5 cut(s)	126, 350, 590, 859, 877
NheI	GCTAGC	1 cut(s)	841
NlaIII	CATG	9 cut(s)	20, 76, 118, 133, 319, 364, 394, 672, 905
NlaIV	GGNNCC	2 cut(s)	57, 99
NmuCI	GTSAC	1 cut(s)	474
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	7 cut(s)	157, 178, 208, 292, 684, 687, 847
PspN4I	GGNNCC	2 cut(s)	57, 99
PspPI	GGNCC	2 cut(s)	401, 894
PsuI	RGATCY	3 cut(s)	350, 590, 877
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	3 cut(s)	587, 673, 870
RsaNI	GTAC	3 cut(s)	586, 672, 869
RseI	CAYNNNNRTG	2 cut(s)	21, 740
SacII	CCGCGG	1 cut(s)	686
SalI	GTCGAC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	387, 620
SatI	GCNGC	7 cut(s)	156, 177, 207, 291, 683, 686, 846
Sau3AI	GATC	5 cut(s)	126, 350, 590, 859, 877
Sau96I	GGNCC	2 cut(s)	401, 894
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	58, 343
SetI	ASST	5 cut(s)	223, 349, 469, 547, 850
SfaNI	GCATC	3 cut(s)	142, 518, 527
SfcI	CTRYAG	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	686
SgrBI	CCGCGG	1 cut(s)	686
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	21, 740
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	3 cut(s)	159, 180, 310
SsiI	CCGC	7 cut(s)	78, 207, 291, 683, 685, 787, 810
SspMI	CTAG	3 cut(s)	513, 825, 842
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	4 cut(s)	13, 163, 569, 746
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	3 cut(s)	159, 180, 310
TatI	WGTACW	2 cut(s)	585, 671
TauI	GCSGC	4 cut(s)	209, 293, 685, 688
Tru1I	TTAA	2 cut(s)	387, 620
Tru9I	TTAA	2 cut(s)	387, 620
TscAI	CASTG	2 cut(s)	695, 879
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	3 cut(s)	155, 176, 845
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	6 cut(s)	33, 131, 210, 231, 287, 332
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	695, 879
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	3 cut(s)	513, 825, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.