Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Forward (+)

25663834 .. 25665640

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTGTCTAGATGGCCAGGGAATCGAGTGGCAATGGGCACCCTCGCCGGTAAGAAGAAAGAAGCATGTACTACGACTTTATGGTAATATTTATTGGAACATGACGGCTCAACAGCAAGTAAAGGAACCGAATGCCTTAGTCATGAACAAGAAGATCATGTCGATTATTGCTGAGAGGGATTCTGCAATTCGAGAACGAAATGCAGCAATATCTGAAAAGAATGAAGCCTTTGCTGCAAGAGATGAGGCTCTCCGACAGCGCGATGAGGCATTTGCTCAGCGTGATACTGCCCTAATGGAACGAGACAATGCCTTTGCAGCCTTTCATATCCGGGATAACTCCATGAACTTCCCATTGGGTGGTGGAGTTCAACGTGGATCTAAGCGTATGCACTACCCTTCAAATCATCCAGTTAACATGGCTGATGGTCCTTACAGCACAAAAGATGTGCCTATAACTGAAGCCTTCCCAATTTCAGTATTATCCGCCGAAGCTATCAAGTCACGGCAGACAAAGCGATCAAAGGAGAATAAGGCATCCAAGGCATCCAAGGCGTCAAGAAAGAAAGTAGGTGAAGATTTGAATAGGCAGGCTTCCACTGATGGGATAAAGTACAGATCTGAGTGGGATACTCAGGATTTAGGCTTGAATCTTGTCTCATTTGACGAGACTACAATGCCTGTGCCAGTTTGCTCATGTACTGGAATGCCACGGCAGTGCTACAAATGGGGGAATGGTGGGTGGCAGTCATCTTGCTGCACCACCAATATGTCAATGTATCCACTACCCCAAATGCCAAATAAGCGCCACGCCCGGATGGGTGGGCGGAAAATGAGTGGAAGTGTTTTTACTAGATTGCTCAGTCGGCTAGCAGCAGAAGGCCATGATCTATCAGTACCACTGGATCTGAAGGAATACTGGGCCAGACATGGGACAAATCGCTACATAACAATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

319

Amino Acids

36.09

Weight (kDa)

9.67

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	31 - 319	3.2e-112	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	486, 826
AclWI	GGATC	2 cut(s)	385, 912
AcoI	YGGCCR	1 cut(s)	13
AcuI	CTGAAG	2 cut(s)	480, 929
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	4 cut(s)	69, 614, 700, 897
AfiI	CCNNNNNNNGG	3 cut(s)	359, 603, 930
AgsI	TTSAA	4 cut(s)	371, 402, 583, 649
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AleI	CACNNNNGTG	1 cut(s)	715
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
Alw26I	GTCTC	3 cut(s)	297, 661, 662
AlwI	GGATC	2 cut(s)	385, 912
AoxI	GGCC	3 cut(s)	13, 880, 921
ApeKI	GCWGC	5 cut(s)	203, 233, 317, 756, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	2 cut(s)	261, 807
AspS9I	GGNCC	2 cut(s)	428, 921
AsuC2I	CCSGG	2 cut(s)	332, 814
AsuHPI	GGTGA	1 cut(s)	584
AsuNHI	GCTAGC	1 cut(s)	868
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	832, 864
BbvI	GCAGC	5 cut(s)	215, 220, 329, 743, 884
BccI	CCATC	4 cut(s)	5, 419, 596, 811
BceAI	ACGGC	3 cut(s)	120, 521, 728
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	2 cut(s)	622, 789
BcnI	CCSGG	2 cut(s)	332, 814
BcoDI	GTCTC	3 cut(s)	297, 661, 662
BfaI	CTAG	3 cut(s)	8, 852, 869
BfoI	RGCGCY	1 cut(s)	808
BfuI	GTATCC	2 cut(s)	622, 789
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	5 cut(s)	204, 234, 318, 757, 873
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	5 cut(s)	205, 235, 319, 758, 874
Bme1390I	CCNGG	3 cut(s)	17, 332, 814
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	428, 921
BmiI	GGNNCC	2 cut(s)	39, 126
BmrFI	CCNGG	3 cut(s)	17, 332, 814
BmrI	ACTGGG	1 cut(s)	928
BmsI	GCATC	2 cut(s)	545, 554
BmtI	GCTAGC	1 cut(s)	872
BmuI	ACTGGG	1 cut(s)	928
Bpu1102I	GCTNAGC	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	332, 814
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	4 cut(s)	16, 540, 549, 710
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 603, 930
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	5 cut(s)	410, 686, 706, 906, 923
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	4 cut(s)	16, 540, 549, 710
BseGI	GGATG	4 cut(s)	406, 536, 545, 822
BseLI	CCNNNNNNNGG	3 cut(s)	359, 603, 930
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	5 cut(s)	162, 290, 612, 647, 874
BseNI	ACTGG	5 cut(s)	410, 686, 706, 906, 923
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	215, 220, 329, 743, 884
BsgI	GTGCAG	1 cut(s)	742
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	15, 882, 923
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	47, 331, 814
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	3 cut(s)	359, 603, 930
BsmAI	GTCTC	3 cut(s)	297, 661, 662
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	2 cut(s)	136, 711
BsnI	GGCC	3 cut(s)	15, 882, 923
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	486, 826
BspANI	GGCC	3 cut(s)	15, 882, 923
BspCNI	CTCAG	5 cut(s)	163, 289, 613, 646, 873
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	39, 126
BspOI	GCTAGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	385, 912
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	5 cut(s)	410, 686, 706, 906, 923
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	4 cut(s)	16, 540, 549, 710
BssMI	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	2 cut(s)	540, 549
Bst2UI	CCWGG	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	591, 870
BstDEI	CTNAG	7 cut(s)	136, 171, 276, 381, 621, 633, 860
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	406, 536, 545, 822
BstFNI	CGCG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	808
BstHHI	GCGC	2 cut(s)	261, 807
BstKTI	GATC	6 cut(s)	156, 380, 521, 620, 889, 907
BstMAI	GTCTC	3 cut(s)	297, 661, 662
BstMBI	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 317, 514, 542, 551, 802, 865
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	3 cut(s)	15, 330, 812
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	215, 220, 329, 743, 884
BstX2I	RGATCY	3 cut(s)	377, 617, 904
BstYI	RGATCY	3 cut(s)	377, 617, 904
BsuI	GTATCC	2 cut(s)	622, 789
BsuRI	GGCC	3 cut(s)	15, 882, 923
BtgI	CCRYGG	1 cut(s)	710
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	406, 536, 545, 822
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	3 cut(s)	597, 722, 899
Cac8I	GCNNGC	2 cut(s)	591, 870
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	2 cut(s)	261, 807
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	428, 921
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	68, 613, 699, 896
CviAII	CATG	9 cut(s)	65, 100, 142, 157, 343, 418, 696, 884, 929
CviQI	GTAC	4 cut(s)	68, 613, 699, 896
DdeI	CTNAG	7 cut(s)	136, 171, 276, 381, 621, 633, 860
DpnI	GATC	6 cut(s)	155, 379, 520, 619, 888, 906
DpnII	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
EaeI	YGGCCR	1 cut(s)	13
EciI	GGCGGA	2 cut(s)	475, 841
Eco130I	CCWWGG	2 cut(s)	540, 549
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	480, 929
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	540, 549
ErhI	CCWWGG	2 cut(s)	540, 549
FaeI	CATG	9 cut(s)	68, 103, 145, 160, 346, 421, 699, 887, 932
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	9 cut(s)	64, 99, 141, 156, 342, 417, 695, 883, 928
Fnu4HI	GCNGC	5 cut(s)	204, 234, 318, 757, 873
FokI	GGATG	4 cut(s)	393, 523, 532, 829
Fsp4HI	GCNGC	5 cut(s)	204, 234, 318, 757, 873
FspBI	CTAG	3 cut(s)	8, 852, 869
GlaI	GCGC	2 cut(s)	260, 806
GluI	GCNGC	5 cut(s)	204, 234, 318, 757, 873
HaeII	RGCGCY	1 cut(s)	808
HaeIII	GGCC	3 cut(s)	15, 882, 923
HapII	CCGG	3 cut(s)	47, 331, 814
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	2 cut(s)	261, 807
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	9 cut(s)	68, 103, 145, 160, 346, 421, 699, 887, 932
Hin6I	GCGC	2 cut(s)	259, 805
HinP1I	GCGC	2 cut(s)	259, 805
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	21, 179, 649
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	47, 331, 814
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	214, 254, 622, 909
Hpy188III	TCNNGA	5 cut(s)	8, 142, 191, 558, 635
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	4 cut(s)	408, 475, 872, 904
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	6 cut(s)	185, 203, 236, 317, 391, 759
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 317, 514, 542, 551, 802, 865
HpyF3I	CTNAG	7 cut(s)	136, 171, 276, 381, 621, 633, 860
HpySE526I	ACGT	1 cut(s)	373
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	9 cut(s)	68, 103, 145, 160, 346, 421, 699, 887, 932
HspAI	GCGC	2 cut(s)	259, 805
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
Lsp1109I	GCAGC	5 cut(s)	215, 220, 329, 743, 884
LweI	GCATC	2 cut(s)	545, 554
MaeI	CTAG	3 cut(s)	8, 852, 869
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	6 cut(s)	155, 379, 520, 619, 888, 906
MboI	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
MboII	GAAGA	3 cut(s)	66, 163, 587
MflI	RGATCY	3 cut(s)	377, 617, 904
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	2 cut(s)	186, 471
MluNI	TGGCCA	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	52, 168, 238, 259
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	715, 767
Msp20I	TGGCCA	1 cut(s)	15
MspI	CCGG	3 cut(s)	47, 331, 814
MspR9I	CCNGG	3 cut(s)	17, 332, 814
Mva1269I	GAATGC	2 cut(s)	136, 711
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	7 cut(s)	233, 317, 514, 542, 551, 802, 865
NciI	CCSGG	2 cut(s)	332, 814
NdeII	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
NheI	GCTAGC	1 cut(s)	868
NlaIII	CATG	9 cut(s)	68, 103, 145, 160, 346, 421, 699, 887, 932
NlaIV	GGNNCC	2 cut(s)	39, 126
NmuCI	GTSAC	1 cut(s)	501
NspI	RCATGY	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	715
PagI	TCATGA	1 cut(s)	141
PctI	GAATGC	2 cut(s)	136, 711
PfeI	GAWTC	3 cut(s)	21, 179, 649
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	5 cut(s)	205, 235, 319, 758, 874
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	39, 126
PspPI	GGNCC	2 cut(s)	428, 921
PsuI	RGATCY	3 cut(s)	377, 617, 904
RsaI	GTAC	4 cut(s)	69, 614, 700, 897
RsaNI	GTAC	4 cut(s)	68, 613, 699, 896
RseI	CAYNNNNRTG	2 cut(s)	715, 767
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	5 cut(s)	204, 234, 318, 757, 873
Sau3AI	GATC	6 cut(s)	153, 377, 518, 617, 886, 904
Sau96I	GGNCC	2 cut(s)	428, 921
ScrFI	CCNGG	3 cut(s)	17, 332, 814
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	3 cut(s)	376, 496, 574
SfaNI	GCATC	2 cut(s)	545, 554
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	715, 767
Sse9I	AATT	2 cut(s)	186, 471
SsiI	CCGC	2 cut(s)	486, 826
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	3 cut(s)	8, 852, 869
StyD4I	CCNGG	3 cut(s)	15, 330, 812
StyI	CCWWGG	2 cut(s)	540, 549
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	24, 161, 190
TasI	AATT	2 cut(s)	186, 471
TatI	WGTACW	3 cut(s)	67, 612, 698
TfiI	GAWTC	3 cut(s)	21, 179, 649
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	3 cut(s)	604, 722, 906
TseFI	GTSAC	1 cut(s)	501
TseI	GCWGC	5 cut(s)	203, 233, 317, 756, 872
Tsp45I	GTSAC	1 cut(s)	501
TspDTI	ATGAA	4 cut(s)	158, 237, 314, 359
TspRI	CASTG	3 cut(s)	604, 722, 906
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	3 cut(s)	8, 852, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.