Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Reverse (-)

8371821 .. 8376404

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1062100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATGATGGTCGGCAACATGAAAATGGGAGACACAAGATGGACTATTACAGAGGGGGGGTGGCATCGCCGTGGAATATGATGGCCCAACAGCAAGCGAAGGAACCAAATGCCTTAGTCATGAACAAGAAGATCATGTCCATTATTGCTGACAGGGATGCTGCTATTCGAGAACGAAATGCAGCACTTGCTGAAAAGAATGAAGCCTTGGCTGCAAGAGATGAGGCACTCCGACAGCGAGATGAGGCACTTACTCAGCGTGATAGTGCCCTGATGGAACGGGACAACGCCTATGCAGCCCTTCATTCGCGGGATAATGCTGTCAACTTCCCGTTGGGTGGTGGAGCTCAACGTGGAGCTAAACGCGTGCAGCGCCCCTCAAACCATTCAGTTACCCTGGCTGATGTTCATTACAGCACAAAAGATGTGCATATAACTGAGGCCTACCCTATTTCAGTTATATCTCCTGAAGCTGTCAAGTCACGTCAGACAAAGCGAGCAAAGGAGAACAAGGCATCCAGGGCAAAGCAGTCACGGAAAAAGGTAGGCGAAGATTTGAATAGGCAGGCTTCCTCGGATGGGATTAAGTATAAATCAGAGTGGGATACTCATGATTTGGGTTTGAATCTTGTCTCGTTCGATGAGTCTACAATGCCAGTGCCAGTTTGTTCATGCACTGGAATTCCGCGGCAGTGCTACAAATGGGGGAATGGCGGGTGGCAGTCATCTTGTTGCACCACCCATATGTCTATGTATCCACTACCTCAGATGCCAAATAAGCGCCATGCACGGATGGGTGGGCGGAAGATGAGCGGAAGTGTTTTTACTAGATTGCTTAGTCGGCTGGCAGCAGATGGTCATGATTTGTCAATACCGCTGGATTTGAAAGAATACTGGGCCAGACATGGGACAAATCGCTACATAACGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

312

Amino Acids

34.92

Weight (kDa)

9.6

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 311	1.9e-115	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	3 cut(s)	310, 366, 688
AciI	CCGC	7 cut(s)	310, 686, 688, 714, 802, 813, 875
AcsI	RAATTY	1 cut(s)	681
AcuI	CTGAAG	1 cut(s)	489
AfiI	CCNNNNNNNGG	3 cut(s)	338, 579, 906
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	559, 625, 886
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	396, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	3 cut(s)	347, 359, 473
AluI	AGCT	3 cut(s)	347, 359, 473
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	25, 637
AoxI	GGCC	3 cut(s)	84, 441, 897
ApeKI	GCWGC	6 cut(s)	161, 182, 212, 296, 370, 848
ApoI	RAATTY	1 cut(s)	681
AspLEI	GCGC	2 cut(s)	375, 783
AspS9I	GGNCC	2 cut(s)	85, 897
BaeGI	GKGCMC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	349
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	6 cut(s)	148, 194, 199, 308, 382, 860
BccI	CCATC	7 cut(s)	2, 34, 76, 268, 572, 787, 848
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	398, 520
BciVI	GTATCC	2 cut(s)	598, 765
BcoDI	GTCTC	2 cut(s)	25, 637
BfaI	CTAG	1 cut(s)	828
BfoI	RGCGCY	2 cut(s)	376, 784
BfuI	GTATCC	2 cut(s)	598, 765
BisI	GCNGC	7 cut(s)	162, 183, 213, 297, 371, 689, 849
BlsI	GCNGC	7 cut(s)	163, 184, 214, 298, 372, 690, 850
Bme1390I	CCNGG	2 cut(s)	398, 520
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	85, 897
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	398, 520
BmrI	ACTGGG	1 cut(s)	904
BmsI	GCATC	4 cut(s)	74, 148, 524, 759
BmuI	ACTGGG	1 cut(s)	904
BsaJI	CCNNGG	6 cut(s)	71, 207, 396, 519, 573, 686
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 579, 906
Bse1I	ACTGG	4 cut(s)	656, 662, 682, 899
BseBI	CCWGG	2 cut(s)	398, 520
BseDI	CCNNGG	6 cut(s)	71, 207, 396, 519, 573, 686
BseGI	GGATG	5 cut(s)	10, 163, 515, 583, 798
BseLI	CCNNNNNNNGG	3 cut(s)	338, 579, 906
BseMII	CTCAG	3 cut(s)	269, 429, 779
BseNI	ACTGG	4 cut(s)	656, 662, 682, 899
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	6 cut(s)	148, 194, 199, 308, 382, 860
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	3 cut(s)	310, 366, 688
BshFI	GGCC	3 cut(s)	86, 443, 899
BsiHKAI	GWGCWC	1 cut(s)	349
BslFI	GGGAC	2 cut(s)	296, 922
BslI	CCNNNNNNNGG	3 cut(s)	338, 579, 906
BsmAI	GTCTC	2 cut(s)	25, 637
BsmFI	GGGAC	2 cut(s)	296, 922
BsnI	GGCC	3 cut(s)	86, 443, 899
Bsp1286I	GDGCHC	2 cut(s)	271, 349
Bsp143I	GATC	2 cut(s)	132, 927
BspACI	CCGC	7 cut(s)	310, 686, 688, 714, 802, 813, 875
BspANI	GGCC	3 cut(s)	86, 443, 899
BspCNI	CTCAG	3 cut(s)	268, 430, 778
BspFNI	CGCG	3 cut(s)	310, 366, 688
BspHI	TCATGA	3 cut(s)	120, 610, 859
BspLI	GGNNCC	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	813
BsrI	ACTGG	4 cut(s)	656, 662, 682, 899
BssECI	CCNNGG	6 cut(s)	71, 207, 396, 519, 573, 686
BssMI	GATC	2 cut(s)	132, 927
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	398, 520
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	5 cut(s)	96, 368, 498, 567, 846
BstDEI	CTNAG	5 cut(s)	115, 255, 438, 765, 836
BstDSI	CCRYGG	2 cut(s)	71, 686
BstF5I	GGATG	5 cut(s)	10, 163, 515, 583, 798
BstFNI	CGCG	3 cut(s)	310, 366, 688
BstH2I	RGCGCY	2 cut(s)	376, 784
BstHHI	GCGC	2 cut(s)	375, 783
BstKTI	GATC	2 cut(s)	135, 930
BstMAI	GTCTC	2 cut(s)	25, 637
BstMBI	GATC	2 cut(s)	132, 927
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 212, 296, 372, 521, 778, 841
BstNI	CCWGG	2 cut(s)	398, 520
BstSCI	CCNGG	2 cut(s)	396, 518
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	3 cut(s)	310, 366, 688
BstV1I	GCAGC	6 cut(s)	148, 194, 199, 308, 382, 860
BsuI	GTATCC	2 cut(s)	598, 765
BsuRI	GGCC	3 cut(s)	86, 443, 899
BtgI	CCRYGG	2 cut(s)	71, 686
BtgZI	GCGATG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	5 cut(s)	10, 163, 515, 583, 798
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	3 cut(s)	663, 675, 698
Cac8I	GCNNGC	5 cut(s)	96, 368, 498, 567, 846
CciI	TCATGA	3 cut(s)	120, 610, 859
CfoI	GCGC	2 cut(s)	375, 783
Cfr13I	GGNCC	2 cut(s)	85, 897
Cfr42I	CCGCGG	1 cut(s)	689
CviAII	CATG	8 cut(s)	20, 121, 136, 611, 672, 785, 860, 905
DdeI	CTNAG	5 cut(s)	115, 255, 438, 765, 836
DpnI	GATC	2 cut(s)	134, 929
DpnII	GATC	2 cut(s)	132, 927
EciI	GGCGGA	1 cut(s)	817
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	396, 518
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	8 cut(s)	23, 124, 139, 614, 675, 788, 863, 908
FaqI	GGGAC	2 cut(s)	296, 922
FatI	CATG	8 cut(s)	19, 120, 135, 610, 671, 784, 859, 904
FauI	CCCGC	2 cut(s)	303, 707
FauNDI	CATATG	1 cut(s)	744
FblI	GTMKAC	1 cut(s)	647
Fnu4HI	GCNGC	7 cut(s)	162, 183, 213, 297, 371, 689, 849
FokI	GGATG	5 cut(s)	17, 170, 502, 590, 805
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	7 cut(s)	162, 183, 213, 297, 371, 689, 849
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	374, 782
GluI	GCNGC	7 cut(s)	162, 183, 213, 297, 371, 689, 849
HaeII	RGCGCY	2 cut(s)	376, 784
HaeIII	GGCC	3 cut(s)	86, 443, 899
HhaI	GCGC	2 cut(s)	375, 783
Hin1II	CATG	8 cut(s)	23, 124, 139, 614, 675, 788, 863, 908
Hin6I	GCGC	2 cut(s)	373, 781
HinP1I	GCGC	2 cut(s)	373, 781
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	625, 644
Hpy166II	GTNNAC	2 cut(s)	325, 648
Hpy188I	TCNGA	5 cut(s)	233, 489, 577, 598, 768
Hpy188III	TCNNGA	5 cut(s)	121, 170, 467, 611, 860
Hpy8I	GTNNAC	2 cut(s)	325, 648
HpyAV	CCTTC	2 cut(s)	94, 311
HpyCH4IV	ACGT	2 cut(s)	352, 484
HpyCH4V	TGCA	8 cut(s)	182, 215, 296, 370, 430, 675, 735, 788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 212, 296, 372, 521, 778, 841
HpyF3I	CTNAG	5 cut(s)	115, 255, 438, 765, 836
HpySE526I	ACGT	2 cut(s)	352, 484
Hsp92II	CATG	8 cut(s)	23, 124, 139, 614, 675, 788, 863, 908
HspAI	GCGC	2 cut(s)	373, 781
KspI	CCGCGG	1 cut(s)	689
Kzo9I	GATC	2 cut(s)	132, 927
LmnI	GCTCC	2 cut(s)	344, 356
Lsp1109I	GCAGC	6 cut(s)	148, 194, 199, 308, 382, 860
LweI	GCATC	4 cut(s)	74, 148, 524, 759
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	2 cut(s)	352, 484
MaeIII	GTNAC	3 cut(s)	391, 480, 531
MalI	GATC	2 cut(s)	134, 929
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	2 cut(s)	132, 927
MboII	GAAGA	3 cut(s)	142, 563, 817
MhlI	GDGCHC	2 cut(s)	271, 349
MluCI	AATT	1 cut(s)	681
MluI	ACGCGT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	47, 217, 238, 388, 433, 583, 774
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	3 cut(s)	24, 70, 743
MspA1I	CMGCKG	2 cut(s)	688, 877
MspR9I	CCNGG	2 cut(s)	398, 520
MvaI	CCWGG	2 cut(s)	398, 520
MvnI	CGCG	3 cut(s)	310, 366, 688
MwoI	GCNNNNNNNGC	7 cut(s)	188, 212, 296, 372, 521, 778, 841
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	2 cut(s)	132, 927
NlaIII	CATG	8 cut(s)	23, 124, 139, 614, 675, 788, 863, 908
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	480, 531
PagI	TCATGA	3 cut(s)	120, 610, 859
PceI	AGGCCT	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	7 cut(s)	163, 184, 214, 298, 372, 690, 850
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	396, 518
PspGI	CCWGG	2 cut(s)	396, 518
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	85, 897
RseI	CAYNNNNRTG	3 cut(s)	24, 70, 743
SacI	GAGCTC	1 cut(s)	349
SacII	CCGCGG	1 cut(s)	689
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	7 cut(s)	162, 183, 213, 297, 371, 689, 849
Sau3AI	GATC	2 cut(s)	132, 927
Sau96I	GGNCC	2 cut(s)	85, 897
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	398, 520
SduI	GDGCHC	2 cut(s)	271, 349
SetI	ASST	7 cut(s)	349, 355, 361, 475, 487, 546, 766
SfaNI	GCATC	4 cut(s)	74, 148, 524, 759
Sfr303I	CCGCGG	1 cut(s)	689
SgrBI	CCGCGG	1 cut(s)	689
SmiMI	CAYNNNNRTG	3 cut(s)	24, 70, 743
Sse9I	AATT	1 cut(s)	681
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	7 cut(s)	310, 686, 688, 714, 802, 813, 875
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	1 cut(s)	349
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	396, 518
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	2 cut(s)	355, 487
TaqI	TCGA	2 cut(s)	169, 639
TasI	AATT	1 cut(s)	681
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	3 cut(s)	663, 682, 698
TseFI	GTSAC	2 cut(s)	480, 531
TseI	GCWGC	6 cut(s)	161, 182, 212, 296, 370, 848
Tsp45I	GTSAC	2 cut(s)	480, 531
TspDTI	ATGAA	6 cut(s)	36, 137, 216, 293, 398, 660
TspGWI	ACGGA	2 cut(s)	550, 805
TspRI	CASTG	3 cut(s)	663, 682, 698
XapI	RAATTY	1 cut(s)	681
XmiI	GTMKAC	1 cut(s)	647
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.