Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Forward (+)

26730729 .. 26735722

Gene Structure 4994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATGATGGTCGACAACATGAAAATGGGAGACACAAGCAGGACTATTACAGAGGGGCACCCTCGCCGTGGAACATGACGGCTCAACAGCAAGTAAAGGAACCAAATGCCTTAGTCATGAACAAGAAGATCATGTCGATTATTGCTGAGAGGGATTCTGCAATTCGAGAACGAAATGCAGCAATCTCTGAAAAGAATGAAGCCTTTGCTGCAAGAGATGAGGCTCTCCGACAGCGCGATGAGGCATTTGCTCAGCGTGATACTGCCCTAATGGAACGAGACAATGCCTTTGCAGCCTTTCATATCCGGGATAATTCCATGAACTTCCCATTGGGTGGTGGAGTTCAACGTGGATCTAAGCGCATGCACTACCCTTCAAATCATCCAGTTAACATGGCTGATGGTCCTTACAGCACAAAAGATGTGCCTATAACTGAGGCCTTCCCAATTTCAGTATTATCCGCCGAAGCTATCAAGTCACGGCAGACAAAGCGATCAAAGGAGAATAAGGCGTCCAAGGCATCCAAGGCGTCCAGAAAGAAAGTAGGTGAAGATTTGAATAGGCAGGCTTCCACTGATGGGATAAAGTACAGATCTGAGTGGGATACTCAGGATTTAGGCTTGAATCTTGTCTCATTTGACGAGACTACAATGCCTGTGCCAGTTTGCTCATGTACTGGAATGCCACGGCAGTGCTACAAATGGGGGAATGGTGGGTGGCAGTCATCTTGCTGCACCACCAATATGTCAATGTATCCACTACCCCAAATGCCAAATAAGCGCCACGCCCGGATGGGTGGGCGGAAAATGAGTGGAAGTGTTTTTACTAGATTGCTCAGTCGGCTAGCAGCAGAAGGCCATGATCTATCAGTACCACTGGATCTGAAGGAATACTGGGCCAGACATGGGACAAATCGCTACATAACAATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

311

Amino Acids

35.09

Weight (kDa)

9.56

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 311	1e-115	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	462, 802
AclWI	GGATC	2 cut(s)	361, 888
AcuI	CTGAAG	1 cut(s)	905
AcyI	GRCGYC	2 cut(s)	512, 530
AfaI	GTAC	3 cut(s)	590, 676, 873
AfiI	CCNNNNNNNGG	4 cut(s)	69, 335, 579, 906
AgsI	TTSAA	4 cut(s)	347, 378, 559, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AleI	CACNNNNGTG	1 cut(s)	691
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
Alw26I	GTCTC	4 cut(s)	25, 273, 637, 638
AlwI	GGATC	2 cut(s)	361, 888
AoxI	GGCC	3 cut(s)	438, 856, 897
ApeKI	GCWGC	5 cut(s)	179, 209, 293, 732, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	3 cut(s)	237, 363, 783
AspS9I	GGNCC	2 cut(s)	404, 897
AsuC2I	CCSGG	2 cut(s)	308, 790
AsuHPI	GGTGA	1 cut(s)	560
AsuNHI	GCTAGC	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
BbvI	GCAGC	5 cut(s)	191, 196, 305, 719, 860
BccI	CCATC	4 cut(s)	2, 395, 572, 787
BceAI	ACGGC	4 cut(s)	52, 96, 497, 704
BciVI	GTATCC	2 cut(s)	598, 765
BcnI	CCSGG	2 cut(s)	308, 790
BcoDI	GTCTC	4 cut(s)	25, 273, 637, 638
BfaI	CTAG	2 cut(s)	828, 845
BfoI	RGCGCY	1 cut(s)	784
BfuI	GTATCC	2 cut(s)	598, 765
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	5 cut(s)	180, 210, 294, 733, 849
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	5 cut(s)	181, 211, 295, 734, 850
Bme1390I	CCNGG	2 cut(s)	308, 790
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	404, 897
BmiI	GGNNCC	2 cut(s)	60, 102
BmrFI	CCNGG	2 cut(s)	308, 790
BmrI	ACTGGG	1 cut(s)	904
BmsI	GCATC	1 cut(s)	530
BmtI	GCTAGC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	904
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	308, 790
BsaHI	GRCGYC	2 cut(s)	512, 530
BsaJI	CCNNGG	4 cut(s)	68, 516, 525, 686
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 335, 579, 906
Bse1I	ACTGG	5 cut(s)	386, 662, 682, 882, 899
BseDI	CCNNGG	4 cut(s)	68, 516, 525, 686
BseGI	GGATG	4 cut(s)	10, 382, 521, 798
BseLI	CCNNNNNNNGG	4 cut(s)	69, 335, 579, 906
BseMII	CTCAG	6 cut(s)	138, 266, 426, 588, 623, 850
BseNI	ACTGG	5 cut(s)	386, 662, 682, 882, 899
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	191, 196, 305, 719, 860
BsgI	GTGCAG	1 cut(s)	718
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	440, 858, 899
BshNI	GGYRCC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	307, 790
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	4 cut(s)	69, 335, 579, 906
BsmAI	GTCTC	4 cut(s)	25, 273, 637, 638
BsmFI	GGGAC	1 cut(s)	922
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	3 cut(s)	440, 858, 899
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	462, 802
BspANI	GGCC	3 cut(s)	440, 858, 899
BspCNI	CTCAG	6 cut(s)	139, 265, 427, 589, 622, 849
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	60, 102
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	2 cut(s)	361, 888
BspT107I	GGYRCC	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	386, 662, 682, 882, 899
BssECI	CCNNGG	4 cut(s)	68, 516, 525, 686
BssMI	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
BssNI	GRCGYC	2 cut(s)	512, 530
BssT1I	CCWWGG	2 cut(s)	516, 525
BstACI	GRCGYC	2 cut(s)	512, 530
BstC8I	GCNNGC	3 cut(s)	365, 567, 846
BstDEI	CTNAG	8 cut(s)	112, 147, 252, 357, 435, 597, 609, 836
BstDSI	CCRYGG	2 cut(s)	68, 686
BstF5I	GGATG	4 cut(s)	10, 382, 521, 798
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	3 cut(s)	237, 363, 783
BstKTI	GATC	6 cut(s)	132, 356, 497, 596, 865, 883
BstMAI	GTCTC	4 cut(s)	25, 273, 637, 638
BstMBI	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 293, 490, 518, 527, 778, 841
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	306, 788
BstSLI	GKGCMC	1 cut(s)	61
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	5 cut(s)	191, 196, 305, 719, 860
BstX2I	RGATCY	3 cut(s)	353, 593, 880
BstYI	RGATCY	3 cut(s)	353, 593, 880
BsuI	GTATCC	2 cut(s)	598, 765
BsuRI	GGCC	3 cut(s)	440, 858, 899
BtgI	CCRYGG	2 cut(s)	68, 686
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	10, 382, 521, 798
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	3 cut(s)	573, 698, 875
Cac8I	GCNNGC	3 cut(s)	365, 567, 846
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	3 cut(s)	237, 363, 783
Cfr13I	GGNCC	2 cut(s)	404, 897
CseI	GACGC	2 cut(s)	501, 519
Csp6I	GTAC	3 cut(s)	589, 675, 872
CviQI	GTAC	3 cut(s)	589, 675, 872
DdeI	CTNAG	8 cut(s)	112, 147, 252, 357, 435, 597, 609, 836
DpnI	GATC	6 cut(s)	131, 355, 496, 595, 864, 882
DpnII	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
EciI	GGCGGA	2 cut(s)	451, 817
Eco130I	CCWWGG	2 cut(s)	516, 525
Eco147I	AGGCCT	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	905
EcoT14I	CCWWGG	2 cut(s)	516, 525
ErhI	CCWWGG	2 cut(s)	516, 525
FaqI	GGGAC	1 cut(s)	922
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	5 cut(s)	180, 210, 294, 733, 849
FokI	GGATG	4 cut(s)	17, 369, 508, 805
Fsp4HI	GCNGC	5 cut(s)	180, 210, 294, 733, 849
FspBI	CTAG	2 cut(s)	828, 845
GlaI	GCGC	3 cut(s)	236, 362, 782
GluI	GCNGC	5 cut(s)	180, 210, 294, 733, 849
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	3 cut(s)	440, 858, 899
HapII	CCGG	2 cut(s)	307, 790
HgaI	GACGC	2 cut(s)	501, 519
HhaI	GCGC	3 cut(s)	237, 363, 783
Hin1I	GRCGYC	2 cut(s)	512, 530
Hin6I	GCGC	3 cut(s)	235, 361, 781
HinP1I	GCGC	3 cut(s)	235, 361, 781
HincII	GTYRAC	2 cut(s)	14, 391
HindII	GTYRAC	2 cut(s)	14, 391
HinfI	GANTC	2 cut(s)	155, 625
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	307, 790
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	14, 391
Hpy188I	TCNGA	4 cut(s)	190, 230, 598, 885
Hpy188III	TCNNGA	4 cut(s)	118, 167, 534, 611
Hpy8I	GTNNAC	2 cut(s)	14, 391
HpyAV	CCTTC	4 cut(s)	384, 451, 848, 880
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	161, 179, 212, 293, 367, 735
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 293, 490, 518, 527, 778, 841
HpyF3I	CTNAG	8 cut(s)	112, 147, 252, 357, 435, 597, 609, 836
HpySE526I	ACGT	1 cut(s)	349
Hsp92I	GRCGYC	2 cut(s)	512, 530
HspAI	GCGC	3 cut(s)	235, 361, 781
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
Lsp1109I	GCAGC	5 cut(s)	191, 196, 305, 719, 860
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	2 cut(s)	828, 845
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	6 cut(s)	131, 355, 496, 595, 864, 882
MboI	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
MboII	GAAGA	2 cut(s)	139, 563
MflI	RGATCY	3 cut(s)	353, 593, 880
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	162, 313, 447
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	47, 73, 144, 214, 235, 430
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	3 cut(s)	24, 691, 743
MspI	CCGG	2 cut(s)	307, 790
MspR9I	CCNGG	2 cut(s)	308, 790
Mva1269I	GAATGC	1 cut(s)	687
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	7 cut(s)	209, 293, 490, 518, 527, 778, 841
NciI	CCSGG	2 cut(s)	308, 790
NdeII	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
NheI	GCTAGC	1 cut(s)	844
NlaIV	GGNNCC	2 cut(s)	60, 102
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	367
OliI	CACNNNNGTG	1 cut(s)	691
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	440
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	2 cut(s)	155, 625
PflMI	CCANNNNNTGG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	181, 211, 295, 734, 850
PspN4I	GGNNCC	2 cut(s)	60, 102
PspPI	GGNCC	2 cut(s)	404, 897
PsuI	RGATCY	3 cut(s)	353, 593, 880
RsaI	GTAC	3 cut(s)	590, 676, 873
RsaNI	GTAC	3 cut(s)	589, 675, 872
RseI	CAYNNNNRTG	3 cut(s)	24, 691, 743
SalI	GTCGAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	180, 210, 294, 733, 849
Sau3AI	GATC	6 cut(s)	129, 353, 494, 593, 862, 880
Sau96I	GGNCC	2 cut(s)	404, 897
ScrFI	CCNGG	2 cut(s)	308, 790
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	3 cut(s)	352, 472, 550
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	3 cut(s)	24, 691, 743
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	3 cut(s)	162, 313, 447
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	2 cut(s)	462, 802
SspMI	CTAG	2 cut(s)	828, 845
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	306, 788
StyI	CCWWGG	2 cut(s)	516, 525
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	13, 137, 166
TasI	AATT	3 cut(s)	162, 313, 447
TatI	WGTACW	2 cut(s)	588, 674
TfiI	GAWTC	2 cut(s)	155, 625
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	3 cut(s)	580, 698, 882
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	5 cut(s)	179, 209, 293, 732, 848
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	5 cut(s)	36, 134, 213, 290, 335
TspRI	CASTG	3 cut(s)	580, 698, 882
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	404
XceI	RCATGY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	2 cut(s)	828, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.