Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Reverse (-)

9370275 .. 9375760

Gene Structure 5486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1054600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACGATGGTCGGCAACATGAAAATGGGAGACACAAGATGGACTATTACAGAGGGGGGACAGCATCTCCGTGGAATATGATGGCCCAACAGCAAGCGAAGGAACCAAATGCCTTAGTCATGAACAAGAAGATCATGTCCATCATTGCTGAAAGGGATGCTGCTATTCGAGAACGGAATGCAGCACTTGCTGAAAAGAATGAAGCCTTGGCTGCAAGAGATGAGGCTCTCCGTCAGCGAGATGAGGCACTTGCTCAGCGTGATAGTGCCATGATGGAACGGGACAACGCCTATGCAGCCCTTCATTCGCGGGATAATGCTGTCAACTTCCCTTTGGGTGGTGGAGCTCCACGTGCAGCTAAACGCATGCACCGTCCCTCAAACCATTCAGTTACCCTGGATGATGTTCATTACAGCACAAAAGATATGCATATAACTGAGGCCTACCCAGTTTCAGTTATATCTACTGAAGATGTCAAGTCACGTCAGACAAAGCAAGCAAAGGAGAACAAGGCATCAAGGGCAAAGCAGTCACGGAAGAAAGTAGGCGAAGATTTAAATAGGCAGGCTTCCTCGGATGGGATAAAGTATAAATCAGAGTGGGATACTCATGATTTGGGTTTGAATCTTGTCACTTTTGACGAGTCTACAATGCCAGTGCCAGTGTGTTCATGCACTGGAATTCCACGGCAGTGCTACAAATGGGGGAATGGTGGGTGGCAGTCATCTTGTTGCACCACCCATATGTCGATGTATCCACTACCTCAGATGCCAAATAAGCGCCATGCCCGGATGGGTGGGCGGAAGATGAGCGGAAGTGTGTTTACTAGATTGCTTAGTCGGCTAGCAGCAGATGGTCATGATTTGTCAATGCCGCTGGATTTGAAAGAATATTGGTCCAGACATGGGACAAATCGCTACATAACGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

312

Amino Acids

35.08

Weight (kDa)

9.41

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 311	1.1e-114	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	1 cut(s)	310
AciI	CCGC	4 cut(s)	310, 802, 813, 875
AcsI	RAATTY	1 cut(s)	681
AcuI	CTGAAG	1 cut(s)	489
AcvI	CACGTG	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	338, 579, 906
AgsI	TTSAA	2 cut(s)	625, 886
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AleI	CACNNNNGTG	1 cut(s)	691
AluBI	AGCT	2 cut(s)	347, 359
AluI	AGCT	2 cut(s)	347, 359
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	84, 441
ApeKI	GCWGC	6 cut(s)	161, 182, 212, 296, 356, 848
ApoI	RAATTY	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	2 cut(s)	85, 897
AsuC2I	CCSGG	1 cut(s)	790
AsuNHI	GCTAGC	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	897
BanII	GRGCYC	1 cut(s)	349
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
BbrPI	CACGTG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	6 cut(s)	148, 194, 199, 308, 368, 860
BccI	CCATC	8 cut(s)	2, 34, 76, 149, 268, 572, 787, 848
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	2 cut(s)	598, 765
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	828, 845
BfoI	RGCGCY	1 cut(s)	784
BfuI	GTATCC	2 cut(s)	598, 765
BisI	GCNGC	7 cut(s)	162, 183, 213, 297, 357, 849, 875
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	7 cut(s)	163, 184, 214, 298, 358, 850, 876
Bme1390I	CCNGG	2 cut(s)	398, 790
Bme18I	GGWCC	1 cut(s)	897
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	85, 897
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	398, 790
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	4 cut(s)	74, 148, 524, 759
BmtI	GCTAGC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	443
BoxI	GACNNNNGTC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	790
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	5 cut(s)	71, 207, 396, 573, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 579, 906
Bse1I	ACTGG	4 cut(s)	449, 656, 662, 682
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	5 cut(s)	71, 207, 396, 573, 686
BseGI	GGATG	4 cut(s)	163, 406, 583, 798
BseLI	CCNNNNNNNGG	3 cut(s)	338, 579, 906
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	269, 429, 779
BseNI	ACTGG	4 cut(s)	449, 656, 662, 682
BseXI	GCAGC	6 cut(s)	148, 194, 199, 308, 368, 860
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	86, 443
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	790
BslFI	GGGAC	4 cut(s)	73, 296, 360, 922
BslI	CCNNNNNNNGG	3 cut(s)	338, 579, 906
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	4 cut(s)	73, 296, 360, 922
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	86, 443
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	132, 927
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	4 cut(s)	310, 802, 813, 875
BspANI	GGCC	2 cut(s)	86, 443
BspCNI	CTCAG	3 cut(s)	268, 430, 778
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	3 cut(s)	120, 610, 859
BspLI	GGNNCC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	848
BsrBI	CCGCTC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	4 cut(s)	449, 656, 662, 682
BssECI	CCNNGG	5 cut(s)	71, 207, 396, 573, 686
BssMI	GATC	2 cut(s)	132, 927
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	5 cut(s)	96, 368, 498, 567, 846
BstDEI	CTNAG	5 cut(s)	115, 255, 438, 765, 836
BstDSI	CCRYGG	2 cut(s)	71, 686
BstF5I	GGATG	4 cut(s)	163, 406, 583, 798
BstFNI	CGCG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	2 cut(s)	135, 930
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	132, 927
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 212, 296, 353, 521, 778, 841
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	370
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	396, 788
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	6 cut(s)	148, 194, 199, 308, 368, 860
BsuI	GTATCC	2 cut(s)	598, 765
BsuRI	GGCC	2 cut(s)	86, 443
BtgI	CCRYGG	2 cut(s)	71, 686
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	4 cut(s)	163, 406, 583, 798
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	4 cut(s)	663, 669, 675, 698
Cac8I	GCNNGC	5 cut(s)	96, 368, 498, 567, 846
CciI	TCATGA	3 cut(s)	120, 610, 859
CfoI	GCGC	1 cut(s)	783
Cfr13I	GGNCC	2 cut(s)	85, 897
DdeI	CTNAG	5 cut(s)	115, 255, 438, 765, 836
DpnI	GATC	2 cut(s)	134, 929
DpnII	GATC	2 cut(s)	132, 927
DraI	TTTAAA	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	817
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	897
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	207
FaqI	GGGAC	4 cut(s)	73, 296, 360, 922
FauI	CCCGC	1 cut(s)	303
FauNDI	CATATG	1 cut(s)	744
FblI	GTMKAC	1 cut(s)	647
Fnu4HI	GCNGC	7 cut(s)	162, 183, 213, 297, 357, 849, 875
FokI	GGATG	4 cut(s)	170, 413, 590, 805
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	7 cut(s)	162, 183, 213, 297, 357, 849, 875
FspBI	CTAG	2 cut(s)	828, 845
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	7 cut(s)	162, 183, 213, 297, 357, 849, 875
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	2 cut(s)	86, 443
HapII	CCGG	1 cut(s)	790
HhaI	GCGC	1 cut(s)	783
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	625, 644
HpaII	CCGG	1 cut(s)	790
Hpy166II	GTNNAC	3 cut(s)	325, 648, 825
Hpy188I	TCNGA	4 cut(s)	489, 577, 598, 768
Hpy188III	TCNNGA	5 cut(s)	121, 170, 611, 860, 900
Hpy8I	GTNNAC	3 cut(s)	325, 648, 825
HpyAV	CCTTC	2 cut(s)	94, 311
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	2 cut(s)	352, 484
HpyCH4V	TGCA	8 cut(s)	182, 215, 296, 356, 370, 430, 675, 735
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 212, 296, 353, 521, 778, 841
HpyF3I	CTNAG	5 cut(s)	115, 255, 438, 765, 836
HpySE526I	ACGT	2 cut(s)	352, 484
HspAI	GCGC	1 cut(s)	781
Kzo9I	GATC	2 cut(s)	132, 927
LmnI	GCTCC	2 cut(s)	344, 352
Lsp1109I	GCAGC	6 cut(s)	148, 194, 199, 308, 368, 860
LweI	GCATC	4 cut(s)	74, 148, 524, 759
MaeI	CTAG	2 cut(s)	828, 845
MaeII	ACGT	2 cut(s)	352, 484
MaeIII	GTNAC	4 cut(s)	391, 480, 531, 631
MalI	GATC	2 cut(s)	134, 929
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	2 cut(s)	132, 927
MboII	GAAGA	5 cut(s)	142, 482, 550, 563, 817
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	7 cut(s)	47, 217, 238, 388, 433, 583, 774
Mph1103I	ATGCAT	1 cut(s)	432
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	4 cut(s)	24, 70, 691, 743
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	1 cut(s)	790
MspR9I	CCNGG	2 cut(s)	398, 790
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	7 cut(s)	188, 212, 296, 353, 521, 778, 841
NciI	CCSGG	1 cut(s)	790
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	2 cut(s)	132, 927
NheI	GCTAGC	1 cut(s)	844
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	3 cut(s)	480, 531, 631
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	691
PaeI	GCATGC	1 cut(s)	370
PagI	TCATGA	3 cut(s)	120, 610, 859
PceI	AGGCCT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	7 cut(s)	163, 184, 214, 298, 358, 850, 876
PleI	GAGTC	1 cut(s)	652
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	652
Ppu21I	YACGTR	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	85, 897
RseI	CAYNNNNRTG	4 cut(s)	24, 70, 691, 743
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	7 cut(s)	162, 183, 213, 297, 357, 849, 875
Sau3AI	GATC	2 cut(s)	132, 927
Sau96I	GGNCC	2 cut(s)	85, 897
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	398, 790
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	5 cut(s)	349, 355, 361, 487, 766
SfaNI	GCATC	4 cut(s)	74, 148, 524, 759
SinI	GGWCC	1 cut(s)	897
SmiI	ATTTAAAT	1 cut(s)	558
SmiMI	CAYNNNNRTG	4 cut(s)	24, 70, 691, 743
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	1 cut(s)	681
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	4 cut(s)	310, 802, 813, 875
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	2 cut(s)	828, 845
SstI	GAGCTC	1 cut(s)	349
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	396, 788
StyI	CCWWGG	1 cut(s)	207
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	2 cut(s)	355, 487
TaqI	TCGA	2 cut(s)	169, 749
TasI	AATT	1 cut(s)	681
TauI	GCSGC	1 cut(s)	877
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	4 cut(s)	663, 669, 682, 698
TseFI	GTSAC	3 cut(s)	480, 531, 631
TseI	GCWGC	6 cut(s)	161, 182, 212, 296, 356, 848
Tsp45I	GTSAC	3 cut(s)	480, 531, 631
TspDTI	ATGAA	6 cut(s)	36, 137, 216, 293, 398, 660
TspGWI	ACGGA	4 cut(s)	60, 190, 221, 550
TspRI	CASTG	4 cut(s)	663, 669, 682, 698
VpaK11BI	GGWCC	1 cut(s)	897
XapI	RAATTY	1 cut(s)	681
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	647
XspI	CTAG	2 cut(s)	828, 845
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.