Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005753

Physical Location & Seq

Genomic Coordinates Forward (+)

25182868 .. 25187834

Gene Structure 4967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGATGGTCGACAACATGAAAATGGGAGACACAAGCAGGACTATTACAGAGGGGCACCCTCGCCGTGGAACATGACGGCTCAACAGCAAGTAAAGGAACCGAATGCCTTAGTCATGAACAAGAAGATCATGTCGATTATTGCTGAGAGGGATTCTGCAATTCGAGAACGAAATGCAGCAATCTCTGAAAAGAATGAAGCCTTTGCTGCAAGAGATGAGGCTCTCCGACAGCGCGATGAGGCATTTGCTCAGCGTGATACTGCCCTAATGGAACGAGACAATGCCTTTGCAGCCTTTCATATCCGGGATAATTCCATGAACTTCCCATTGGGTGGAGTTCAACGTGGATCTAAGCGCATGCACTACCCTTCAAATCATCCAGTTAACATGGCTGATGATCCTTACAGCACAAAAGATGTGCCTATAACTGAAGCCTTCCCAATTTCAGTATTATCCGCCGAAGCTATCAAGTCACGGCAGACAAAGCGATCAAAGGAGAATAAGGCATCCAAGGCATCCAAGGCGTCAAGAAAGAAAGTAGGTGAAGATTTGAATAGGCAGGCTTCCACTGATGGGATAAAGTACAGATCTGAGTGGGATACTCAGGATTTAGGCTTGAATCTTGTCTCATTTGACGAGACTACAATGCCTGTGCCAGTTTGCTCATGTACTGGAATGCCACGGCAGTGCTACAAATGGGGGAATGGTGGGTGGCAGTCATCTTGCTGCACCACCAATATGTCAATGTATCCACTACCCCAAATGCCAAATAAGCGCCATGCCCGGATGGGTGGGCGGAAAATGAGTGGAAGTGTTTTTACTAGATTGCTCAGTCGGCTAGCAGCAGAAGGCCATGATCTATCAGTACCACTGGATCTGAAGGAATACTGGGCCAGACATGGGACAAATCGCTACATAACAATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAGA_bind

Protein Analysis

310

Amino Acids

35.09

Weight (kDa)

9.49

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAGA_bind	PF06217	1 - 310	7.4e-116	GAGA binding protein-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21240 AT2G21240
fragaria_vesca	FvH4_2g10650 FvH4_2g10650 FvH4_2g10650
malus_domestica	MD05G1054600.v1.1 MD10G1062100.v1.1
prunus_persica	Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1 Prupe.8G082900_v2.0.a1
pyrus_communis	pycom05g04480 pycom10g04780
rosa_chinensis	RchiOBHm_Chr6g0268351
rosa_laevigata	RLG00000013918
rosa_multiflora	Rmu_co8407519.1_g000001 Rmu_sc0010202.1_g000012
rosa_roxburghii	Rroxscaffold_7G00199850
rosa_rugosa	Rorug06G0040500
rosa_samantha	Rh6AG160600 Rh6BG165000 Rh6CG153400 Rh6DG150700
rosa_wichuraiana	Rw6G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	459, 799
AclWI	GGATC	3 cut(s)	358, 395, 885
AcuI	CTGAAG	2 cut(s)	453, 902
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	3 cut(s)	587, 673, 870
AfiI	CCNNNNNNNGG	4 cut(s)	69, 335, 576, 903
AgsI	TTSAA	4 cut(s)	344, 375, 556, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AleI	CACNNNNGTG	1 cut(s)	688
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
Alw26I	GTCTC	4 cut(s)	25, 273, 634, 635
AlwI	GGATC	3 cut(s)	358, 395, 885
AoxI	GGCC	2 cut(s)	853, 894
ApeKI	GCWGC	5 cut(s)	179, 209, 293, 729, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	3 cut(s)	237, 360, 780
AspS9I	GGNCC	1 cut(s)	894
AsuC2I	CCSGG	2 cut(s)	308, 787
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	805, 837
BbvI	GCAGC	5 cut(s)	191, 196, 305, 716, 857
BccI	CCATC	3 cut(s)	2, 569, 784
BceAI	ACGGC	4 cut(s)	52, 96, 494, 701
BciVI	GTATCC	2 cut(s)	595, 762
BcnI	CCSGG	2 cut(s)	308, 787
BcoDI	GTCTC	4 cut(s)	25, 273, 634, 635
BfaI	CTAG	2 cut(s)	825, 842
BfoI	RGCGCY	1 cut(s)	781
BfuI	GTATCC	2 cut(s)	595, 762
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	5 cut(s)	180, 210, 294, 730, 846
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	5 cut(s)	181, 211, 295, 731, 847
Bme1390I	CCNGG	2 cut(s)	308, 787
BmgT120I	GGNCC	1 cut(s)	894
BmiI	GGNNCC	2 cut(s)	60, 102
BmrFI	CCNGG	2 cut(s)	308, 787
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	2 cut(s)	518, 527
BmtI	GCTAGC	1 cut(s)	845
BmuI	ACTGGG	1 cut(s)	901
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	308, 787
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	4 cut(s)	68, 513, 522, 683
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 335, 576, 903
Bse1I	ACTGG	5 cut(s)	383, 659, 679, 879, 896
BseDI	CCNNGG	4 cut(s)	68, 513, 522, 683
BseGI	GGATG	5 cut(s)	10, 379, 509, 518, 795
BseLI	CCNNNNNNNGG	4 cut(s)	69, 335, 576, 903
BseMII	CTCAG	5 cut(s)	138, 266, 585, 620, 847
BseNI	ACTGG	5 cut(s)	383, 659, 679, 879, 896
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	191, 196, 305, 716, 857
BsgI	GTGCAG	1 cut(s)	715
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	855, 896
BshNI	GGYRCC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	307, 787
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	4 cut(s)	69, 335, 576, 903
BsmAI	GTCTC	4 cut(s)	25, 273, 634, 635
BsmFI	GGGAC	1 cut(s)	919
BsmI	GAATGC	2 cut(s)	112, 684
BsnI	GGCC	2 cut(s)	855, 896
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	459, 799
BspANI	GGCC	2 cut(s)	855, 896
BspCNI	CTCAG	5 cut(s)	139, 265, 586, 619, 846
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	60, 102
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	3 cut(s)	358, 395, 885
BspT107I	GGYRCC	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	383, 659, 679, 879, 896
BssECI	CCNNGG	4 cut(s)	68, 513, 522, 683
BssMI	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
BssNI	GRCGYC	1 cut(s)	527
BssT1I	CCWWGG	2 cut(s)	513, 522
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	362, 564, 843
BstDEI	CTNAG	7 cut(s)	112, 147, 252, 354, 594, 606, 833
BstDSI	CCRYGG	2 cut(s)	68, 683
BstF5I	GGATG	5 cut(s)	10, 379, 509, 518, 795
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	3 cut(s)	237, 360, 780
BstKTI	GATC	7 cut(s)	132, 353, 403, 494, 593, 862, 880
BstMAI	GTCTC	4 cut(s)	25, 273, 634, 635
BstMBI	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 293, 487, 515, 524, 775, 838
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	306, 785
BstSLI	GKGCMC	1 cut(s)	61
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	5 cut(s)	191, 196, 305, 716, 857
BstX2I	RGATCY	3 cut(s)	350, 590, 877
BstYI	RGATCY	3 cut(s)	350, 590, 877
BsuI	GTATCC	2 cut(s)	595, 762
BsuRI	GGCC	2 cut(s)	855, 896
BtgI	CCRYGG	2 cut(s)	68, 683
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	5 cut(s)	10, 379, 509, 518, 795
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	3 cut(s)	570, 695, 872
Cac8I	GCNNGC	3 cut(s)	362, 564, 843
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	3 cut(s)	237, 360, 780
Cfr13I	GGNCC	1 cut(s)	894
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	3 cut(s)	586, 672, 869
CviQI	GTAC	3 cut(s)	586, 672, 869
DdeI	CTNAG	7 cut(s)	112, 147, 252, 354, 594, 606, 833
DpnI	GATC	7 cut(s)	131, 352, 402, 493, 592, 861, 879
DpnII	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
EciI	GGCGGA	2 cut(s)	448, 814
Eco130I	CCWWGG	2 cut(s)	513, 522
Eco57I	CTGAAG	2 cut(s)	453, 902
EcoT14I	CCWWGG	2 cut(s)	513, 522
ErhI	CCWWGG	2 cut(s)	513, 522
FaqI	GGGAC	1 cut(s)	919
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	5 cut(s)	180, 210, 294, 730, 846
FokI	GGATG	5 cut(s)	17, 366, 496, 505, 802
Fsp4HI	GCNGC	5 cut(s)	180, 210, 294, 730, 846
FspBI	CTAG	2 cut(s)	825, 842
GlaI	GCGC	3 cut(s)	236, 359, 779
GluI	GCNGC	5 cut(s)	180, 210, 294, 730, 846
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	2 cut(s)	855, 896
HapII	CCGG	2 cut(s)	307, 787
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	3 cut(s)	237, 360, 780
Hin1I	GRCGYC	1 cut(s)	527
Hin6I	GCGC	3 cut(s)	235, 358, 778
HinP1I	GCGC	3 cut(s)	235, 358, 778
HincII	GTYRAC	2 cut(s)	14, 388
HindII	GTYRAC	2 cut(s)	14, 388
HinfI	GANTC	2 cut(s)	155, 622
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	307, 787
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	14, 388
Hpy188I	TCNGA	4 cut(s)	190, 230, 595, 882
Hpy188III	TCNNGA	4 cut(s)	118, 167, 531, 608
Hpy8I	GTNNAC	2 cut(s)	14, 388
HpyAV	CCTTC	4 cut(s)	381, 448, 845, 877
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	161, 179, 212, 293, 364, 732
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 293, 487, 515, 524, 775, 838
HpyF3I	CTNAG	7 cut(s)	112, 147, 252, 354, 594, 606, 833
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	527
HspAI	GCGC	3 cut(s)	235, 358, 778
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
Lsp1109I	GCAGC	5 cut(s)	191, 196, 305, 716, 857
LweI	GCATC	2 cut(s)	518, 527
MaeI	CTAG	2 cut(s)	825, 842
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	7 cut(s)	131, 352, 402, 493, 592, 861, 879
MboI	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
MboII	GAAGA	2 cut(s)	139, 560
MflI	RGATCY	3 cut(s)	350, 590, 877
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	162, 313, 444
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	5 cut(s)	47, 73, 144, 214, 235
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	3 cut(s)	24, 688, 740
MspI	CCGG	2 cut(s)	307, 787
MspR9I	CCNGG	2 cut(s)	308, 787
Mva1269I	GAATGC	2 cut(s)	112, 684
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	7 cut(s)	209, 293, 487, 515, 524, 775, 838
NciI	CCSGG	2 cut(s)	308, 787
NdeII	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
NheI	GCTAGC	1 cut(s)	841
NlaIV	GGNNCC	2 cut(s)	60, 102
NmuCI	GTSAC	1 cut(s)	474
NspI	RCATGY	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	688
PaeI	GCATGC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	117
PctI	GAATGC	2 cut(s)	112, 684
PfeI	GAWTC	2 cut(s)	155, 622
PflMI	CCANNNNNTGG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	181, 211, 295, 731, 847
PspN4I	GGNNCC	2 cut(s)	60, 102
PspPI	GGNCC	1 cut(s)	894
PsuI	RGATCY	3 cut(s)	350, 590, 877
RsaI	GTAC	3 cut(s)	587, 673, 870
RsaNI	GTAC	3 cut(s)	586, 672, 869
RseI	CAYNNNNRTG	3 cut(s)	24, 688, 740
SalI	GTCGAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	5 cut(s)	180, 210, 294, 730, 846
Sau3AI	GATC	7 cut(s)	129, 350, 400, 491, 590, 859, 877
Sau96I	GGNCC	1 cut(s)	894
ScrFI	CCNGG	2 cut(s)	308, 787
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	3 cut(s)	349, 469, 547
SfaNI	GCATC	2 cut(s)	518, 527
SmiMI	CAYNNNNRTG	3 cut(s)	24, 688, 740
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	3 cut(s)	162, 313, 444
SsiI	CCGC	2 cut(s)	459, 799
SspMI	CTAG	2 cut(s)	825, 842
StyD4I	CCNGG	2 cut(s)	306, 785
StyI	CCWWGG	2 cut(s)	513, 522
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	13, 137, 166
TasI	AATT	3 cut(s)	162, 313, 444
TatI	WGTACW	2 cut(s)	585, 671
TfiI	GAWTC	2 cut(s)	155, 622
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	577, 695, 879
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	5 cut(s)	179, 209, 293, 729, 845
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	5 cut(s)	36, 134, 213, 290, 335
TspRI	CASTG	3 cut(s)	577, 695, 879
Van91I	CCANNNNNTGG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	2 cut(s)	825, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.