Rorug06G0040500

Protein BASIC PENTACYSTEINE4-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
5154399 .. 5217900
63502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0040500.1

Sequence Viewer

Length: 1119 bp
ATGGCCAATACTGAAGAGCGTCTGCAACAGCTAAAGGCCTTTGACGAATCCAAAGCTGGGGTCAAAGGTCTTGTCGATGATGGAATCACCAAAGTCCCATCCATTTTCATGTACAAGCCAGAAGATCCCTCAGCCGAGGACATCCCAAGTTTCGGCAATCCAACTAGCCAACACCAATTCGGTATTCCAGTTGTGGACCTTGGTGATGCTCTCGCTGGAAGGCCTGCTAAGGTGATCCCAGATATCCGGCGGGCTGCAGAGAGTGTGGGGTTCTTTCATGTGGTTAACCATGGGATACCCAAGAGAGTGTTGGAGGAGATGCTCGAGGCGACGCGTGGGTTTCATGAGCTGCCAAGGGAGGTGAAGGCTGAGTACTATACTAGGGATCCCATGAGGAAGGTCAAATACTTCAGTAGCTATAATTTGTACCAGTCAAGATTTGCTACCTGGAGGGACAGCATGTTTTTTGACATGGCTCCCGAGCCTCTTGATCCACAAGAATTGCCTCTGGTTTGCAGGGATATAACTATGGAGTTTTCTGAGCAAGTACAAAAATTAGCTGTCACTGTGTTTGAATTGCTATCTCAGGCACTTGGACTCAAACCTGACCATCTTTTCGGTTTGGACTGCGAAAAAGAGCATCTTATTATTAGTCACTACTATCCTCCATGTCCTGAGCCTGAGCTCACAATTGGCACAGCCAAACACCAAGATGGCACTTTCATAACACTTCTACTTCAAGATCATATTGGTGGACTTCAGGTTTTGCATGAAAACCAGTGGATTGATGTTCTTCCTCTGCCTGGAGCTCTAATAGTCAACATTGGAAATCTTATGCAGATAATCTCGAATGATAAGTTCGTAAGTGTTGATCATAGAGTGTTGGCAAAGAAAGAAGGTCCAAGAGTATCTGTGGGATGTTTTTTCCGACCTGCGACGTCGCATAATTCGTCGAGGCTGTCAAAAAAGGGCCAAAACAAGTGTCCAAGAAAGCAACGTGGAAGCCTCCATCTGCAGATGCAAATCCCTACTTTGGCGGTAGTCGTATCCAAGGCGGTTCAAGGCTCAAGGACCGAAATTCCCTTTCATGGTATTCCTACTCCGGTTCAAGGGCCGTAG

Protein Analysis

372

Amino Acids

41.66

Weight (kDa)

6.54

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 62 - 165 6.7e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 213 - 311 3.7e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 940
AccII CGCG 1 cut(s) 334
AciI CCGC 3 cut(s) 250, 1037, 1055
AclWI GGATC 5 cut(s) 119, 229, 380, 393, 485
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1077
AcuI CTGAAG 3 cut(s) 33, 394, 743
AcyI GRCGYC 1 cut(s) 938
AfaI GTAC 4 cut(s) 113, 374, 428, 549
AfiI CCNNNNNNNGG 6 cut(s) 57, 152, 803, 1033, 1088, 1109
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 4 cut(s) 575, 740, 1061, 1109
AjnI CCWGG 2 cut(s) 446, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 7 cut(s) 31, 56, 349, 417, 560, 685, 809
AluI AGCT 7 cut(s) 31, 56, 349, 417, 560, 685, 809
Alw21I GWGCWC 2 cut(s) 687, 811
AlwI GGATC 5 cut(s) 119, 229, 380, 393, 485
Ama87I CYCGRG 2 cut(s) 323, 479
AoxI GGCC 5 cut(s) 3, 36, 221, 970, 1112
ApeKI GCWGC 2 cut(s) 254, 349
ApoI RAATTY 1 cut(s) 1077
ArsI GACNNNNNNTTYG 8 cut(s) 45, 57, 77, 89, 599, 631, 967, 999
AspS9I GGNCC 5 cut(s) 196, 899, 970, 1071, 1112
AsuHPI GGTGA 4 cut(s) 79, 215, 244, 373
AvaI CYCGRG 2 cut(s) 323, 479
AvaII GGWCC 3 cut(s) 196, 899, 1071
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 385
BanII GRGCYC 2 cut(s) 687, 811
BarI GAAGNNNNNNTAC 4 cut(s) 356, 388, 389, 421
Bbv12I GWGCWC 2 cut(s) 687, 811
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 241, 336
BccI CCATC 5 cut(s) 74, 106, 618, 707, 1017
BceAI ACGGC 1 cut(s) 1099
BciT130I CCWGG 2 cut(s) 448, 804
BciVI GTATCC 2 cut(s) 288, 1057
BclI TGATCA 1 cut(s) 871
BfaI CTAG 2 cut(s) 165, 381
BfmI CTRYAG 2 cut(s) 255, 1013
BfuAI ACCTGC 1 cut(s) 940
BfuI GTATCC 2 cut(s) 288, 1057
BisI GCNGC 2 cut(s) 255, 350
BlsI GCNGC 2 cut(s) 256, 351
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 448, 804
Bme18I GGWCC 3 cut(s) 196, 899, 1071
BmeT110I CYCGRG 2 cut(s) 323, 479
BmgT120I GGNCC 5 cut(s) 196, 899, 970, 1071, 1112
BmiI GGNNCC 2 cut(s) 387, 477
BmrFI CCNGG 2 cut(s) 448, 804
BmsI GCATC 4 cut(s) 196, 309, 649, 1008
BpmI CTGGAG 2 cut(s) 469, 825
Bpu10I CCTNAGC 4 cut(s) 130, 228, 675, 681
BpuEI CTTGAG 1 cut(s) 1051
BsaBI GATNNNNATC 1 cut(s) 1022
BsaHI GRCGYC 1 cut(s) 938
BsaJI CCNNGG 5 cut(s) 135, 199, 289, 353, 1050
BsaWI WCCGGW 1 cut(s) 1102
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 152, 803, 1033, 1088, 1109
Bse1I ACTGG 3 cut(s) 188, 430, 778
Bse8I GATNNNNATC 1 cut(s) 1022
BseBI CCWGG 2 cut(s) 448, 804
BseDI CCNNGG 5 cut(s) 135, 199, 289, 353, 1050
BseGI GGATG 3 cut(s) 98, 141, 923
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 6 cut(s) 57, 152, 803, 1033, 1088, 1109
BseMII CTCAG 6 cut(s) 144, 360, 531, 599, 666, 672
BseNI ACTGG 3 cut(s) 188, 430, 778
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 241, 336
BseYI CCCAGC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 5 cut(s) 5, 38, 223, 972, 1114
BsiHKAI GWGCWC 2 cut(s) 687, 811
BsiHKCI CYCGRG 2 cut(s) 323, 479
BsiSI CCGG 2 cut(s) 247, 1103
BslFI GGGAC 2 cut(s) 80, 467
BslI CCNNNNNNNGG 6 cut(s) 57, 152, 803, 1033, 1088, 1109
BsmFI GGGAC 2 cut(s) 80, 467
BsnI GGCC 5 cut(s) 5, 38, 223, 972, 1114
BsoBI CYCGRG 2 cut(s) 323, 479
Bsp1286I GDGCHC 2 cut(s) 687, 811
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 6 cut(s) 124, 234, 385, 490, 742, 871
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 3 cut(s) 250, 1037, 1055
BspANI GGCC 5 cut(s) 5, 38, 223, 972, 1114
BspCNI CTCAG 6 cut(s) 143, 361, 532, 598, 667, 673
BspFNI CGCG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 387, 477
BspMAI CTGCAG 2 cut(s) 259, 1017
BspMI ACCTGC 1 cut(s) 940
BspPI GGATC 5 cut(s) 119, 229, 380, 393, 485
BspQI GCTCTTC 1 cut(s) 9
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 3 cut(s) 188, 430, 778
BssECI CCNNGG 5 cut(s) 135, 199, 289, 353, 1050
BssMI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
BssNI GRCGYC 1 cut(s) 938
BssT1I CCWWGG 4 cut(s) 199, 289, 353, 1050
Bst2UI CCWGG 2 cut(s) 448, 804
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 938
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 225, 252
BstDEI CTNAG 7 cut(s) 130, 228, 369, 540, 585, 675, 681
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 3 cut(s) 98, 141, 923
BstFNI CGCG 1 cut(s) 334
BstKTI GATC 6 cut(s) 127, 237, 388, 493, 745, 874
BstMBI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
BstNI CCWGG 2 cut(s) 448, 804
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 446, 802
BstSFI CTRYAG 2 cut(s) 255, 1013
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 241, 336
BstX2I RGATCY 2 cut(s) 124, 385
BstYI RGATCY 2 cut(s) 124, 385
BsuI GTATCC 2 cut(s) 288, 1057
BsuRI GGCC 5 cut(s) 5, 38, 223, 972, 1114
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 3 cut(s) 98, 141, 923
BtsIMutI CAGTG 2 cut(s) 564, 785
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 2 cut(s) 225, 252
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 5 cut(s) 196, 899, 970, 1071, 1112
CseI GACGC 2 cut(s) 8, 340
Csp6I GTAC 4 cut(s) 112, 373, 427, 548
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviQI GTAC 4 cut(s) 112, 373, 427, 548
DdeI CTNAG 7 cut(s) 130, 228, 369, 540, 585, 675, 681
DpnI GATC 6 cut(s) 126, 236, 387, 492, 744, 873
DpnII GATC 6 cut(s) 124, 234, 385, 490, 742, 871
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 2 cut(s) 685, 809
Eco130I CCWWGG 4 cut(s) 199, 289, 353, 1050
Eco147I AGGCCT 2 cut(s) 38, 223
Eco24I GRGCYC 2 cut(s) 687, 811
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 196, 899, 1071
Eco53kI GAGCTC 2 cut(s) 685, 809
Eco57I CTGAAG 3 cut(s) 33, 394, 743
Eco88I CYCGRG 2 cut(s) 323, 479
EcoICRI GAGCTC 2 cut(s) 685, 809
EcoRII CCWGG 2 cut(s) 446, 802
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 4 cut(s) 199, 289, 353, 1050
EcoT38I GRGCYC 2 cut(s) 687, 811
ErhI CCWWGG 4 cut(s) 199, 289, 353, 1050
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 2 cut(s) 80, 467
FauI CCCGC 1 cut(s) 243
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 2 cut(s) 255, 350
FokI GGATG 3 cut(s) 85, 128, 930
FriOI GRGCYC 2 cut(s) 687, 811
Fsp4HI GCNGC 2 cut(s) 255, 350
FspBI CTAG 2 cut(s) 165, 381
GluI GCNGC 2 cut(s) 255, 350
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 2 cut(s) 469, 825
HaeIII GGCC 5 cut(s) 5, 38, 223, 972, 1114
HapII CCGG 2 cut(s) 247, 1103
HgaI GACGC 2 cut(s) 8, 340
Hin1I GRCGYC 1 cut(s) 938
HincII GTYRAC 2 cut(s) 286, 820
HindII GTYRAC 2 cut(s) 286, 820
HinfI GANTC 3 cut(s) 47, 84, 597
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 2 cut(s) 247, 1103
HphI GGTGA 4 cut(s) 79, 215, 244, 373
Hpy166II GTNNAC 4 cut(s) 196, 286, 755, 820
Hpy188I TCNGA 2 cut(s) 541, 929
Hpy188III TCNNGA 7 cut(s) 344, 435, 479, 488, 674, 740, 847
Hpy8I GTNNAC 4 cut(s) 196, 286, 755, 820
Hpy99I CGWCG 4 cut(s) 334, 940, 943, 955
HpyAV CCTTC 4 cut(s) 213, 358, 391, 890
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 2 cut(s) 938, 997
HpyCH4V TGCA 7 cut(s) 25, 257, 516, 769, 838, 1015, 1021
HpyF3I CTNAG 7 cut(s) 130, 228, 369, 540, 585, 675, 681
HpySE526I ACGT 2 cut(s) 938, 997
Hsp92I GRCGYC 1 cut(s) 938
Ksp22I TGATCA 1 cut(s) 871
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 6 cut(s) 124, 234, 385, 490, 742, 871
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 481, 806
Lsp1109I GCAGC 2 cut(s) 241, 336
LweI GCATC 4 cut(s) 196, 309, 649, 1008
MaeI CTAG 2 cut(s) 165, 381
MaeII ACGT 2 cut(s) 938, 997
MaeIII GTNAC 2 cut(s) 562, 653
MalI GATC 6 cut(s) 126, 236, 387, 492, 744, 873
MboI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
MboII GAAGA 3 cut(s) 26, 134, 785
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 2 cut(s) 124, 385
MhlI GDGCHC 2 cut(s) 687, 811
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 176, 421, 500, 554, 575, 690, 946, 1077
MluI ACGCGT 1 cut(s) 332
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 591
MmeI TCCRAC 3 cut(s) 185, 291, 952
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 3 cut(s) 107, 711, 750
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 247, 1103
MspR9I CCNGG 2 cut(s) 448, 804
MunI CAATTG 1 cut(s) 690
MvaI CCWGG 2 cut(s) 448, 804
MvnI CGCG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 289
NdeII GATC 6 cut(s) 124, 234, 385, 490, 742, 871
NlaIV GGNNCC 2 cut(s) 387, 477
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 562, 653
NspI RCATGY 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 323
PagI TCATGA 1 cut(s) 343
PceI AGGCCT 2 cut(s) 38, 223
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 947
PfeI GAWTC 2 cut(s) 47, 84
PkrI GCNGC 2 cut(s) 256, 351
PleI GAGTC 1 cut(s) 591
PpsI GAGTC 1 cut(s) 591
Psp124BI GAGCTC 2 cut(s) 687, 811
Psp6I CCWGG 2 cut(s) 446, 802
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 446, 802
PspN4I GGNNCC 2 cut(s) 387, 477
PspPI GGNCC 5 cut(s) 196, 899, 970, 1071, 1112
PspXI VCTCGAGB 1 cut(s) 323
PstI CTGCAG 2 cut(s) 259, 1017
PsuI RGATCY 2 cut(s) 124, 385
RsaI GTAC 4 cut(s) 113, 374, 428, 549
RsaNI GTAC 4 cut(s) 112, 373, 427, 548
RseI CAYNNNNRTG 3 cut(s) 107, 711, 750
SacI GAGCTC 2 cut(s) 687, 811
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 255, 350
Sau3AI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
Sau96I GGNCC 5 cut(s) 196, 899, 970, 1071, 1112
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 591
ScrFI CCNGG 2 cut(s) 448, 804
SduI GDGCHC 2 cut(s) 687, 811
SfaNI GCATC 4 cut(s) 196, 309, 649, 1008
SfcI CTRYAG 2 cut(s) 255, 1013
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 3 cut(s) 196, 899, 1071
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 3 cut(s) 107, 711, 750
SmlI CTYRAG 2 cut(s) 323, 1066
SmoI CTYRAG 2 cut(s) 323, 1066
Sse9I AATT 8 cut(s) 176, 421, 500, 554, 575, 690, 946, 1077
SseBI AGGCCT 2 cut(s) 38, 223
SsiI CCGC 3 cut(s) 250, 1037, 1055
SspMI CTAG 2 cut(s) 165, 381
SstI GAGCTC 2 cut(s) 687, 811
StuI AGGCCT 2 cut(s) 38, 223
StyD4I CCNGG 2 cut(s) 446, 802
StyI CCWWGG 4 cut(s) 199, 289, 353, 1050
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 2 cut(s) 941, 1000
TaqI TCGA 4 cut(s) 75, 324, 848, 953
TaqII GACCGA 1 cut(s) 1088
TasI AATT 8 cut(s) 176, 421, 500, 554, 575, 690, 946, 1077
TatI WGTACW 3 cut(s) 111, 372, 547
TfiI GAWTC 2 cut(s) 47, 84
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 571, 785
TseFI GTSAC 2 cut(s) 562, 653
TseI GCWGC 2 cut(s) 254, 349
Tsp45I GTSAC 2 cut(s) 562, 653
TspDTI ATGAA 6 cut(s) 97, 266, 332, 712, 786, 1076
TspRI CASTG 2 cut(s) 571, 785
VpaK11BI GGWCC 3 cut(s) 196, 899, 1071
XapI RAATTY 1 cut(s) 1077
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 2 cut(s) 165, 381
ZraI GACGTC 1 cut(s) 939
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.