AT2G21520

protein transport

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9215519 .. 9219236
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21520.3

Sequence Viewer

Length: 1902 bp
ATGTCAGGTCCACTTGATCGATTTGCAAGACCATGTTTTGAGGGATTCTTGAGCAGTGATGAGAAAAAGGAAAGAAAGTCAGATTTTGAGAATTCAGAGGATGAGAGGAGAACAAGAATCGGTTCCTTGAAAAAGAAAGCCATTAATGCCTCTACTAAGTTCAAGCATTCTCTTAAGAAAAAGAGCGGAAGAAGAAAAAGTGATGGTCGAGTGAGTTCTGTATCCATTGAGGATGTGAGGGATGTCGAGGAGCTACAAGCTGTTGATGCGTTTCGACAGTCGTTGTTAATGGACGAGTTGCTTCCTGATAGACACGATGATTATCATATGATGTTGAGGTTCTTGAAAGCGAGGAAATTTGATGTTGAGAAAGCTAAACAAATGTGGGCTGATATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAATGTTATCACGGTGTTGACAAAGAAGGTAGACCTATTTACATTGAAAGGCTAGGGAAAGTTGATCCTAACAGACTCATGCAAGTTACAAGCATGGATCGATATGTAAGATATCATGTAAAGGAGTTTGAGAGGAGCTTTATGATCAAGTTTCCTTCCTGCACTATTTCTGCAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAAAGATTGATGGAGACAATTATCCTGAGACTCTCCACCAAATGTTTATTATCAATGCAGGGCCTGGATTTAGGCTACTCTGGAACACTGTCAAGAGCTTTCTTGACCCTAAGACATCTGCTAAAATTCATGTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGTCATTGATGTCAACGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAGATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTGAACAGCGAAGGGAAAGTCATTGCTTATGCAAAACCTTCATATACATGGATAAAGGGAAGTGACACATCCACTGCAGAGTCAGGATCTGACGCTGAAGATATCGGTTCTCCGAAGGCTATAAAGAGTTTCTCTCATCTCCGCTTGACACCTGTTCGTGAGGAGGCAAAGATAGCTGGTGAAACAAGCTTGGCTGGTAGTTTTCCGGGTTATGACGAGTATGTACCTATGGTGGACAAAGCCGTTGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTCGAGTCCTAGTAATGTTCATGGCATTCTTGATGGCGGTTTTCACATTCTTCCGCACTGTAACAAAGAAACTTCCAGCGACTACTACTTCTTCCCCAGCAGAAACCCAAGGAAACGCAATAGAACTTGGTTCTAACGGTGAAGGAGTTAAAGAGGAGTGTCGTCCTCCTTCTCCTGTACCAGACCTCACGGAAACTGATCTACTAAACTGTGTGACGAAGAAACTGACAGAGCTGGAAGGTAAAATCGGAACGCTCCAATCAAAGCCAAATGAGATGCCATACGAGAAAGAAGAACTGTTAAACGCAGCCGTCTGCAGAGTAGACGCACTTGAAGCAGAGCTCATAGCTACTAAAAAGGCCCTTTACGAAGCTTTGATGAGACAGGAAGAGTTACTTGCTTACATTGATCGTCAAGAAGAAGCTCAGTTCCAGAAGATGAAGAAGAAGAAGAAGAAACATCTCTTTTGCTTCTGA

Protein Analysis

633

Amino Acids

71.72

Weight (kDa)

8.76

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 108 - 135 1.6e-07 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 162 - 324 1.1e-31 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1060
Acc16I TGCGCA 1 cut(s) 973
Acc36I ACCTGC 1 cut(s) 1060
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 2 cut(s) 514, 1749
AciI CCGC 6 cut(s) 186, 984, 1225, 1353, 1463, 1480
AclWI GGATC 3 cut(s) 542, 588, 1177
AcsI RAATTY 3 cut(s) 91, 356, 879
AcuI CTGAAG 1 cut(s) 1200
AcyI GRCGYC 1 cut(s) 1332
AfaI GTAC 6 cut(s) 421, 679, 888, 967, 1308, 1605
AflII CTTAAG 1 cut(s) 173
AjnI CCWGG 2 cut(s) 817, 1337
Alw21I GWGCWC 2 cut(s) 1057, 1770
Alw26I GTCTC 4 cut(s) 762, 776, 1395, 1801
AlwI GGATC 3 cut(s) 542, 588, 1177
AlwNI CAGNNNCTG 2 cut(s) 818, 1172
Ama87I CYCGRG 2 cut(s) 732, 1428
AoxI GGCC 2 cut(s) 815, 1785
ApeKI GCWGC 1 cut(s) 1733
ApoI RAATTY 3 cut(s) 91, 356, 879
ArsI GACNNNNNNTTYG 2 cut(s) 1086, 1118
AseI ATTAAT 2 cut(s) 144, 459
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 974
AspS9I GGNCC 4 cut(s) 8, 815, 1007, 1786
AsuC2I CCSGG 2 cut(s) 1022, 1290
AsuHPI GGTGA 4 cut(s) 1087, 1274, 1357, 1577
AsuII TTCGAA 1 cut(s) 450
AvaI CYCGRG 2 cut(s) 732, 1428
AvaII GGWCC 2 cut(s) 8, 1007
BanII GRGCYC 1 cut(s) 1770
Bbv12I GWGCWC 2 cut(s) 1057, 1770
BbvI GCAGC 1 cut(s) 1745
BccI CCATC 5 cut(s) 197, 758, 1030, 1364, 1453
BceAI ACGGC 2 cut(s) 1310, 1721
BciT130I CCWGG 2 cut(s) 819, 1339
BciVI GTATCC 2 cut(s) 232, 887
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 2 cut(s) 1022, 1290
BcoDI GTCTC 4 cut(s) 762, 776, 1395, 1801
BfaI CTAG 2 cut(s) 536, 1436
BfmI CTRYAG 2 cut(s) 1158, 1741
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 1060
BfuI GTATCC 2 cut(s) 232, 887
BglII AGATCT 1 cut(s) 736
BisI GCNGC 1 cut(s) 1734
BlsI GCNGC 1 cut(s) 1735
Bme1390I CCNGG 4 cut(s) 819, 1022, 1290, 1339
Bme18I GGWCC 2 cut(s) 8, 1007
BmeT110I CYCGRG 2 cut(s) 732, 1428
BmgT120I GGNCC 4 cut(s) 8, 815, 1007, 1786
BmiI GGNNCC 2 cut(s) 124, 1008
BmrFI CCNGG 4 cut(s) 819, 1022, 1290, 1339
BmsI GCATC 3 cut(s) 256, 1428, 1692
BplI GAGNNNNNCTC 2 cut(s) 1201, 1233
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 70, 1357
BpuMI CCSGG 2 cut(s) 1022, 1290
Bsa29I ATCGAT 2 cut(s) 19, 583
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 1332
BsaJI CCNNGG 2 cut(s) 1010, 1534
Bse3DI GCAATG 1 cut(s) 1104
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 2 cut(s) 819, 1339
BseCI ATCGAT 2 cut(s) 19, 583
BseDI CCNNGG 2 cut(s) 1010, 1534
BseGI GGATG 5 cut(s) 106, 238, 247, 1151, 1356
BseJI GATNNNNATC 1 cut(s) 321
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 3 cut(s) 771, 936, 1865
BseRI GAGGAG 7 cut(s) 121, 263, 631, 1065, 1259, 1392, 1595
BseXI GCAGC 1 cut(s) 1745
BseYI CCCAGC 1 cut(s) 1522
BsgI GTGCAG 1 cut(s) 628
BshFI GGCC 2 cut(s) 817, 1787
BshVI ATCGAT 2 cut(s) 19, 583
BsiHKAI GWGCWC 2 cut(s) 1057, 1770
BsiHKCI CYCGRG 2 cut(s) 732, 1428
BsiSI CCGG 2 cut(s) 1022, 1289
BslFI GGGAC 1 cut(s) 1020
BsmAI GTCTC 4 cut(s) 762, 776, 1395, 1801
BsmFI GGGAC 1 cut(s) 1020
BsmI GAATGC 2 cut(s) 166, 1451
BsnI GGCC 2 cut(s) 817, 1787
BsoBI CYCGRG 2 cut(s) 732, 1428
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 1057, 1770
BspACI CCGC 6 cut(s) 186, 984, 1225, 1353, 1463, 1480
BspANI GGCC 2 cut(s) 817, 1787
BspCNI CTCAG 3 cut(s) 772, 937, 1864
BspDI ATCGAT 2 cut(s) 19, 583
BspHI TCATGA 1 cut(s) 1411
BspLI GGNNCC 2 cut(s) 124, 1008
BspMAI CTGCAG 2 cut(s) 1162, 1745
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 3 cut(s) 542, 588, 1177
BspT104I TTCGAA 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 1104
BssECI CCNNGG 2 cut(s) 1010, 1534
BssNI GRCGYC 1 cut(s) 1332
BssT1I CCWWGG 2 cut(s) 1010, 1534
Bst2UI CCWGG 2 cut(s) 819, 1339
Bst4CI ACNGT 8 cut(s) 279, 497, 844, 1399, 1486, 1565, 1637, 1725
Bst6I CTCTTC 2 cut(s) 447, 1809
BstACI GRCGYC 1 cut(s) 1332
BstAFI CTTAAG 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 992
BstDEI CTNAG 6 cut(s) 156, 780, 864, 905, 945, 1851
BstF5I GGATG 5 cut(s) 106, 238, 247, 1151, 1356
BstHHI GCGC 1 cut(s) 974
BstMAI GTCTC 4 cut(s) 762, 776, 1395, 1801
BstMWI GCNNNNNNNGC 6 cut(s) 146, 266, 1061, 1256, 1331, 1760
BstNI CCWGG 2 cut(s) 819, 1339
BstNSI RCATGY 2 cut(s) 966, 994
BstSCI CCNGG 4 cut(s) 817, 1020, 1288, 1337
BstSFI CTRYAG 2 cut(s) 1158, 1741
BstV1I GCAGC 1 cut(s) 1745
BstX2I RGATCY 2 cut(s) 736, 1169
BstYI RGATCY 2 cut(s) 736, 1169
Bsu15I ATCGAT 2 cut(s) 19, 583
BsuI GTATCC 2 cut(s) 232, 887
BsuRI GGCC 2 cut(s) 817, 1787
BsuTUI ATCGAT 2 cut(s) 19, 583
BtsCI GGATG 5 cut(s) 106, 238, 247, 1151, 1356
BtsI GCAGTG 2 cut(s) 61, 1155
BtsIMutI CAGTG 4 cut(s) 61, 840, 1155, 1482
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 1 cut(s) 992
CaiI CAGNNNCTG 2 cut(s) 818, 1172
CciI TCATGA 1 cut(s) 1411
CfoI GCGC 1 cut(s) 974
Cfr13I GGNCC 4 cut(s) 8, 815, 1007, 1786
ClaI ATCGAT 2 cut(s) 19, 583
CseI GACGC 3 cut(s) 1184, 1340, 1760
Csp6I GTAC 6 cut(s) 420, 678, 887, 966, 1307, 1604
CviQI GTAC 6 cut(s) 420, 678, 887, 966, 1307, 1604
DdeI CTNAG 6 cut(s) 156, 780, 864, 905, 945, 1851
Eam1104I CTCTTC 2 cut(s) 447, 1809
EarI CTCTTC 2 cut(s) 447, 1809
Ecl136II GAGCTC 1 cut(s) 1768
Eco130I CCWWGG 2 cut(s) 1010, 1534
Eco24I GRGCYC 1 cut(s) 1770
Eco32I GATATC 2 cut(s) 596, 1186
Eco47I GGWCC 2 cut(s) 8, 1007
Eco53kI GAGCTC 1 cut(s) 1768
Eco57I CTGAAG 1 cut(s) 1200
Eco88I CYCGRG 2 cut(s) 732, 1428
EcoICRI GAGCTC 1 cut(s) 1768
EcoO109I RGGNCCY 3 cut(s) 815, 1007, 1786
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 817, 1337
EcoRV GATATC 2 cut(s) 596, 1186
EcoT14I CCWWGG 2 cut(s) 1010, 1534
EcoT38I GRGCYC 1 cut(s) 1770
ErhI CCWWGG 2 cut(s) 1010, 1534
FalI AAGNNNNNCTT 4 cut(s) 1366, 1398, 1806, 1838
FaqI GGGAC 1 cut(s) 1020
FauI CCCGC 1 cut(s) 1360
FauNDI CATATG 1 cut(s) 327
FbaI TGATCA 1 cut(s) 627
FblI GTMKAC 2 cut(s) 514, 1749
Fnu4HI GCNGC 1 cut(s) 1734
FokI GGATG 5 cut(s) 113, 245, 254, 1138, 1343
FriOI GRGCYC 1 cut(s) 1770
Fsp4HI GCNGC 1 cut(s) 1734
FspBI CTAG 2 cut(s) 536, 1436
FspI TGCGCA 1 cut(s) 973
GlaI GCGC 1 cut(s) 973
GluI GCNGC 1 cut(s) 1734
GsaI CCCAGC 1 cut(s) 1526
HaeIII GGCC 2 cut(s) 817, 1787
HapII CCGG 2 cut(s) 1022, 1289
HgaI GACGC 3 cut(s) 1184, 1340, 1760
HhaI GCGC 1 cut(s) 974
Hin1I GRCGYC 1 cut(s) 1332
Hin6I GCGC 1 cut(s) 972
HinP1I GCGC 1 cut(s) 972
HincII GTYRAC 3 cut(s) 502, 934, 1330
HindII GTYRAC 3 cut(s) 502, 934, 1330
HindIII AAGCTT 2 cut(s) 1270, 1797
HinfI GANTC 8 cut(s) 45, 117, 397, 558, 671, 784, 1163, 1431
HpaII CCGG 2 cut(s) 1022, 1289
HphI GGTGA 4 cut(s) 1087, 1274, 1357, 1577
Hpy166II GTNNAC 7 cut(s) 11, 502, 515, 934, 1318, 1330, 1750
Hpy188I TCNGA 8 cut(s) 82, 97, 893, 1000, 1174, 1197, 1676, 1901
Hpy8I GTNNAC 7 cut(s) 11, 502, 515, 934, 1318, 1330, 1750
HpyCH4III ACNGT 8 cut(s) 279, 497, 844, 1399, 1486, 1565, 1637, 1725
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 266, 1061, 1256, 1331, 1760
HpyF3I CTNAG 6 cut(s) 156, 780, 864, 905, 945, 1851
Hsp92I GRCGYC 1 cut(s) 1332
HspAI GCGC 1 cut(s) 972
Ksp22I TGATCA 1 cut(s) 627
LmnI GCTCC 5 cut(s) 250, 618, 1052, 1379, 1686
Lsp1109I GCAGC 1 cut(s) 1745
LweI GCATC 3 cut(s) 256, 1428, 1692
MaeI CTAG 2 cut(s) 536, 1436
MaeIII GTNAC 5 cut(s) 568, 1145, 1486, 1639, 1818
MbiI CCGCTC 1 cut(s) 186
MflI RGATCY 2 cut(s) 736, 1169
MhlI GDGCHC 2 cut(s) 1057, 1770
MluCI AATT 6 cut(s) 91, 356, 772, 879, 911, 1026
MlyI GAGTC 4 cut(s) 552, 778, 1172, 1440
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 8 cut(s) 144, 174, 287, 459, 720, 1385, 1575, 1727
MslI CAYNNNNRTG 1 cut(s) 1129
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 1022, 1289
MspR9I CCNGG 4 cut(s) 819, 1022, 1290, 1339
Mva1269I GAATGC 2 cut(s) 166, 1451
MvaI CCWGG 2 cut(s) 819, 1339
MwoI GCNNNNNNNGC 6 cut(s) 146, 266, 1061, 1256, 1331, 1760
NciI CCSGG 2 cut(s) 1022, 1290
NdeI CATATG 1 cut(s) 327
NlaIV GGNNCC 2 cut(s) 124, 1008
NmuCI GTSAC 2 cut(s) 1145, 1639
NsbI TGCGCA 1 cut(s) 973
NspI RCATGY 2 cut(s) 966, 994
NspV TTCGAA 1 cut(s) 450
PaeI GCATGC 1 cut(s) 994
PaeR7I CTCGAG 2 cut(s) 732, 1428
PagI TCATGA 1 cut(s) 1411
PaqCI CACCTGC 1 cut(s) 1060
PctI GAATGC 2 cut(s) 166, 1451
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 4 cut(s) 45, 117, 397, 671
PkrI GCNGC 1 cut(s) 1735
PleI GAGTC 4 cut(s) 552, 778, 1171, 1439
PpsI GAGTC 4 cut(s) 552, 778, 1171, 1439
PpuMI RGGWCCY 1 cut(s) 1007
PshBI ATTAAT 2 cut(s) 144, 459
Psp124BI GAGCTC 1 cut(s) 1770
Psp5II RGGWCCY 1 cut(s) 1007
Psp6I CCWGG 2 cut(s) 817, 1337
PspFI CCCAGC 1 cut(s) 1522
PspGI CCWGG 2 cut(s) 817, 1337
PspN4I GGNNCC 2 cut(s) 124, 1008
PspPI GGNCC 4 cut(s) 8, 815, 1007, 1786
PspPPI RGGWCCY 1 cut(s) 1007
PspXI VCTCGAGB 1 cut(s) 1428
PstI CTGCAG 2 cut(s) 1162, 1745
PstNI CAGNNNCTG 2 cut(s) 818, 1172
PsuI RGATCY 2 cut(s) 736, 1169
RsaI GTAC 6 cut(s) 421, 679, 888, 967, 1308, 1605
RsaNI GTAC 6 cut(s) 420, 678, 887, 966, 1307, 1604
RseI CAYNNNNRTG 1 cut(s) 1129
SacI GAGCTC 1 cut(s) 1770
SaqAI TTAA 8 cut(s) 144, 174, 287, 459, 720, 1385, 1575, 1727
SatI GCNGC 1 cut(s) 1734
Sau96I GGNCC 4 cut(s) 8, 815, 1007, 1786
SchI GAGTC 4 cut(s) 552, 778, 1172, 1440
ScrFI CCNGG 4 cut(s) 819, 1022, 1290, 1339
SduI GDGCHC 2 cut(s) 1057, 1770
SfaNI GCATC 3 cut(s) 256, 1428, 1692
SfcI CTRYAG 2 cut(s) 1158, 1741
Sfr274I CTCGAG 2 cut(s) 732, 1428
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 2 cut(s) 8, 1007
SlaI CTCGAG 2 cut(s) 732, 1428
SmiMI CAYNNNNRTG 1 cut(s) 1129
SmlI CTYRAG 5 cut(s) 49, 173, 732, 1372, 1428
SmoI CTYRAG 5 cut(s) 49, 173, 732, 1372, 1428
SphI GCATGC 1 cut(s) 994
Sse9I AATT 6 cut(s) 91, 356, 772, 879, 911, 1026
SsiI CCGC 6 cut(s) 186, 984, 1225, 1353, 1463, 1480
SspMI CTAG 2 cut(s) 536, 1436
SstI GAGCTC 1 cut(s) 1770
StyD4I CCNGG 4 cut(s) 817, 1020, 1288, 1337
StyI CCWWGG 2 cut(s) 1010, 1534
TaaI ACNGT 8 cut(s) 279, 497, 844, 1399, 1486, 1565, 1637, 1725
TaqI TCGA 9 cut(s) 19, 208, 246, 274, 450, 583, 733, 1060, 1429
TasI AATT 6 cut(s) 91, 356, 772, 879, 911, 1026
TatI WGTACW 3 cut(s) 677, 886, 965
TfiI GAWTC 4 cut(s) 45, 117, 397, 671
Tru1I TTAA 8 cut(s) 144, 174, 287, 459, 720, 1385, 1575, 1727
Tru9I TTAA 8 cut(s) 144, 174, 287, 459, 720, 1385, 1575, 1727
TscAI CASTG 4 cut(s) 61, 847, 1162, 1489
TseFI GTSAC 2 cut(s) 1145, 1639
TseI GCWGC 1 cut(s) 1733
Tsp45I GTSAC 2 cut(s) 1145, 1639
TspDTI ATGAA 7 cut(s) 477, 872, 1034, 1113, 1428, 1435, 1880
TspGWI ACGGA 1 cut(s) 1631
TspRI CASTG 4 cut(s) 61, 847, 1162, 1489
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 8, 1007
VspI ATTAAT 2 cut(s) 144, 459
XapI RAATTY 3 cut(s) 91, 356, 879
XceI RCATGY 2 cut(s) 966, 994
XhoI CTCGAG 2 cut(s) 732, 1428
XmiI GTMKAC 2 cut(s) 514, 1749
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 2 cut(s) 536, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.