Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008261

Physical Location & Seq

Genomic Coordinates Reverse (-)

2526775 .. 2527356

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATGAAATGCAGTGGTTTGGTTCTCGGATTACTGGCCTTGCTTCTTCTAGCCATGGCCACCAAACCAGCACACTGCAAATACTACTCCAAAACAATCCCCAACATCCACCGCAAAGAGAAGGTGACGCACCTCCACTTCTACTACTTCGACATCCTCAGCGGCACCAAACCCAGCGCAGTGGAAATCGCACGTCCCAGCCTCACCAGAAACGACACGTCGCCCACACCCTTCGGCAGCCTCACTGCCACCGATGACCCTCTCCGCGAAGGCCCAGAGACCAACTCAACGGTGATCGGGAATGCCAGGGGGATATACTTGTCGGCGAGCCAATACGCAAGCCAGATGACTTTGATGATGTACAAAGATTTCGGTTTTACTGCGGGTAAGTTTAAGGGGAGCTCTTTCGGGGTGTTTTCGAGGAATCCGATTTGGGAGACGACGCCGCGTGAGGTGGCGGTGGTGGGCGGGAGAGGGAAGTTTAGGTTGGCTAGAGGGTTTGCTAAGCTTAGGACTCATTACTTAAATGTTAGTAATGGTGATGCCGTTGTCGAGTATAGAGTGACTCTCATCCATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

9.78

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	42 - 190	2.6e-47	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21520 AT2G21520 AT2G21520 AT4G39170 AT4G39170
fragaria_vesca	FvH4_2g09500
malus_domestica	MD05G1062600.v1.1 MD10G1070300.v1.1
prunus_persica	Prupe.8G091900_v2.0.a1 Prupe.8G091900_v2.0.a1
pyrus_communis	pycom05g05420 pycom10g05610
rosa_chinensis	RchiOBHm_Chr6g0265801
rosa_laevigata	RLG00000014159
rosa_multiflora	Rmu_sc0000208.1_g000031
rosa_roxburghii	Rroxscaffold_7G00202380
rosa_rugosa	Rorug06G0019600 Rorug06G0019700
rosa_samantha	Rh6AG141700 Rh6BG141700 Rh6CG138300 Rh6DG125300
rosa_wichuraiana	Rw6G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	2 cut(s)	267, 448
AciI	CCGC	7 cut(s)	112, 162, 265, 383, 446, 458, 468
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	216
AjiI	CACGTC	2 cut(s)	194, 219
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	2 cut(s)	402, 508
AluI	AGCT	2 cut(s)	402, 508
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	2 cut(s)	272, 431
AoxI	GGCC	3 cut(s)	36, 57, 271
ApeKI	GCWGC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	4 cut(s)	136, 196, 304, 551
BalI	TGGCCA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	404
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	272, 431
BfaI	CTAG	2 cut(s)	50, 492
BisI	GCNGC	3 cut(s)	163, 238, 446
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	3 cut(s)	164, 239, 447
Bme1390I	CCNGG	1 cut(s)	307
BmgBI	CACGTC	2 cut(s)	194, 219
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	532
BplI	GAGNNNNNCTC	3 cut(s)	269, 301, 552
Bpu10I	CCTNAGC	2 cut(s)	158, 509
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	54, 306
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	54, 306
BseGI	GGATG	3 cut(s)	105, 153, 570
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	2 cut(s)	173, 197
Bsh1236I	CGCG	2 cut(s)	267, 448
BshFI	GGCC	3 cut(s)	38, 59, 273
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	272, 431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	38, 59, 273
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	294
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	7 cut(s)	112, 162, 265, 383, 446, 458, 468
BspANI	GGCC	3 cut(s)	38, 59, 273
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	2 cut(s)	267, 448
BspLI	GGNNCC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	54, 306
BssMI	GATC	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	328, 340
BstDEI	CTNAG	3 cut(s)	158, 504, 509
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	105, 153, 570
BstFNI	CGCG	2 cut(s)	267, 448
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	272, 431
BstMBI	GATC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstUI	CGCG	2 cut(s)	267, 448
BstV1I	GCAGC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	38, 59, 273
BtgI	CCRYGG	1 cut(s)	54
BtrI	CACGTC	2 cut(s)	194, 219
BtsCI	GGATG	3 cut(s)	105, 153, 570
BtsI	GCAGTG	4 cut(s)	19, 73, 186, 243
BtsIMutI	CAGTG	4 cut(s)	19, 73, 186, 243
Cac8I	GCNNGC	2 cut(s)	328, 340
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	2 cut(s)	136, 451
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	55
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	158, 504, 509
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	1 cut(s)	58
FaiI	YATR	3 cut(s)	56, 316, 558
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	54
FauI	CCCGC	2 cut(s)	376, 461
Fnu4HI	GCNGC	3 cut(s)	163, 238, 446
FokI	GGATG	3 cut(s)	92, 140, 557
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	163, 238, 446
FspBI	CTAG	2 cut(s)	50, 492
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	3 cut(s)	163, 238, 446
GsaI	CCCAGC	2 cut(s)	177, 201
HaeIII	GGCC	3 cut(s)	38, 59, 273
HgaI	GACGC	2 cut(s)	136, 451
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	3 cut(s)	424, 514, 565
HphI	GGTGA	4 cut(s)	136, 196, 304, 551
Hpy188I	TCNGA	2 cut(s)	29, 429
Hpy188III	TCNNGA	1 cut(s)	298
Hpy99I	CGWCG	2 cut(s)	223, 445
HpyAV	CCTTC	3 cut(s)	115, 241, 263
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	193, 218
HpyCH4V	TGCA	2 cut(s)	12, 78
HpyF3I	CTNAG	3 cut(s)	158, 504, 509
HpySE526I	ACGT	2 cut(s)	193, 218
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	399
LpnPI	CCDG	9 cut(s)	20, 81, 187, 211, 220, 288, 292, 319, 356
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	2 cut(s)	50, 492
MaeII	ACGT	2 cut(s)	193, 218
MaeIII	GTNAC	2 cut(s)	124, 562
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	508, 559
MnlI	CCTC	9 cut(s)	143, 167, 212, 251, 270, 414, 445, 467, 488
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	393, 524
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	2 cut(s)	267, 448
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	124, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	164, 239, 447
PleI	GAGTC	2 cut(s)	508, 559
PpsI	GAGTC	2 cut(s)	508, 559
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	305
PspFI	CCCAGC	2 cut(s)	173, 197
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	393, 524
SatI	GCNGC	3 cut(s)	163, 238, 446
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	508, 559
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	8 cut(s)	126, 135, 196, 221, 404, 456, 488, 510
SfaNI	GCATC	1 cut(s)	532
SsiI	CCGC	7 cut(s)	112, 162, 265, 383, 446, 458, 468
SspMI	CTAG	2 cut(s)	50, 492
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	196, 221
TaqI	TCGA	3 cut(s)	150, 419, 552
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	2 cut(s)	165, 448
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	393, 524
Tru9I	TTAA	2 cut(s)	393, 524
TscAI	CASTG	4 cut(s)	19, 80, 186, 250
TseFI	GTSAC	2 cut(s)	124, 562
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	2 cut(s)	124, 562
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	4 cut(s)	19, 80, 186, 250
XspI	CTAG	2 cut(s)	50, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.