Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008261

Physical Location & Seq

Genomic Coordinates Reverse (-)

22620552 .. 22626777

Gene Structure 6226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTCGGGCCCACTCGATCGGTTCGCTAGGCCATGTTTTGAAGGGTTTTATGGTAGTGATGAGAAAAGAGAAAGGAAGTCTGATTTTGAGAACTCCGAGGATGAGCGGAGGACTAGAATTGGGACTCTGAAGAAGAAGGCCATAAATGCGTCTACTAAATTTAAGCACTCTCTCAAGAAAAAGGGTAGTAGAAGAAAAAGTGATGGCAGAGTCAGCTCTGTTTCTATTGAAGATGTTCGGGATGTTGAAGAGCTACAGGCTGTTGATGCATTTCGACAATCACTAATTTTGGATGAATTGCTGCCGGACAAACACGATGACTATCATATGATGTTGAGGTTCTTGAAAGCAAGGAAATTCGATGTTGAAAAAGCAAAGCATATGTGGGCTGATATGCTTCAATGGAGAAAGGAGTTCGGTTCCGACACTATTATGGAGGATTTTGAGTTCAAAGAATTGGATGATGTTCTTAACTATTATCCTCATGGGCATCATGGTGTGGATAAGGAGGGAAGACCAGTTTATATTGAAAGGTTAGGGAAAGTAGATCCCAACAAACTAATGCAAGTTACCACTATGGATCGCTATGTGAAATACCATGTGCAGGAGTTTGAGAAAAGCTTTGCAATAAAGTTTCCGTCTTGTACTATTGCTGCAAAGAGGCACATAGATTCAAGCACTACAATCTTAGATGTTCAAGGCGTGGGCTTCAAGAACTTTACAAAGTCTGCACGAGAACTAATTATGCGGTTGCAGAAGGTTGATGGTGATAACTATCCTGAGACCCTCTGTCAAATGTTCATCATTAATGCTGGTCCTGGGTTTAGGCTTCTGTGGAACACTGTGAAGACTTTTCTTGATCCTAAAACAACATCAAAGATTCATGTTCTTGGAAACAAATACCAAAGCAAATTGCTTGAGATAATTGATGCCAGTGAGTTGCCAGAATTTCTGGGTGGAAGCTGTACCTGTGCAGATCAGGGAGGTTGCCTTCGCTCTGATAGGGGGCCCTGGAAAAACCCTGACATCTTGAAGATGGTTCTTAGTGGTGAAGCACGGCGTGCAAGGCAGGTTGTTAAAGTCCTAAACAGTGAGGGGAAATTTCTTGCTTATGCTAAGCCACACTATCCAATGCAGGTAAAGGGTAGCGATACATCAACTGCTGAGTCGGGATCTGAAGCGGAGGATATTGCATCCCCGAAAGCTTTGAAGAGTTATTCACATCTTCGTTTGACTCCTGTTCGAGAAGAGGCTAAGGTCGTAGGCAAGGCAAGCTGTGCAGGAAGCTTCTCAGGTTATGATGAATATGTTCCTATGGTTGACAAAGCTGTTGATGCTGGTTGGAAAAAGCAAGCTTCTCTGCAAAAATCTCATTCTCCCAAAGGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

463

Amino Acids

52.59

Weight (kDa)

8.99

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	103 - 131	1.5e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	158 - 320	3.8e-30	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21520 AT2G21520 AT2G21520 AT4G39170 AT4G39170
fragaria_vesca	FvH4_2g09500
malus_domestica	MD05G1062600.v1.1 MD10G1070300.v1.1
prunus_persica	Prupe.8G091900_v2.0.a1 Prupe.8G091900_v2.0.a1
pyrus_communis	pycom05g05420 pycom10g05610
rosa_chinensis	RchiOBHm_Chr6g0265801
rosa_laevigata	RLG00000014159
rosa_multiflora	Rmu_sc0000208.1_g000031
rosa_roxburghii	Rroxscaffold_7G00202380
rosa_rugosa	Rorug06G0019600 Rorug06G0019700
rosa_samantha	Rh6AG141700 Rh6BG141700 Rh6CG138300 Rh6DG125300
rosa_wichuraiana	Rw6G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1060, 1126
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	3 cut(s)	106, 748, 1181
AclWI	GGATC	4 cut(s)	542, 588, 854, 1180
AcsI	RAATTY	4 cut(s)	158, 356, 947, 1100
AcuI	CTGAAG	2 cut(s)	149, 1197
AdeI	CACNNNGTG	1 cut(s)	1061
AfaI	GTAC	2 cut(s)	646, 967
AfiI	CCNNNNNNNGG	1 cut(s)	604
AhdI	GACNNNNNGTC	1 cut(s)	789
AjnI	CCWGG	2 cut(s)	817, 1010
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	9 cut(s)	216, 253, 621, 963, 1205, 1275, 1287, 1328, 1355
AluI	AGCT	9 cut(s)	216, 253, 621, 963, 1205, 1275, 1287, 1328, 1355
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	4 cut(s)	542, 588, 854, 1180
AoxI	GGCC	4 cut(s)	7, 29, 138, 1007
ApaI	GGGCCC	2 cut(s)	11, 1011
ApeKI	GCWGC	2 cut(s)	301, 653
ApoI	RAATTY	4 cut(s)	158, 356, 947, 1100
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	2 cut(s)	234, 1308
AspS9I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
AsuHPI	GGTGA	2 cut(s)	779, 1061
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	11, 1011
BanII	GRGCYC	2 cut(s)	11, 1011
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	520, 854
BbvI	GCAGC	2 cut(s)	288, 640
BccI	CCATC	3 cut(s)	197, 758, 1030
BceAI	ACGGC	1 cut(s)	1073
BciT130I	CCWGG	2 cut(s)	819, 1012
BcoDI	GTCTC	1 cut(s)	776
BfaI	CTAG	2 cut(s)	27, 114
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	2 cut(s)	1060, 1126
BisI	GCNGC	2 cut(s)	302, 654
BlpI	GCTNAGC	1 cut(s)	1116
BlsI	GCNGC	2 cut(s)	303, 655
Bme1390I	CCNGG	2 cut(s)	819, 1012
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	789
BmgT120I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
BmiI	GGNNCC	4 cut(s)	9, 421, 1008, 1009
BmrFI	CCNGG	2 cut(s)	819, 1012
BmsI	GCATC	5 cut(s)	256, 499, 919, 1202, 1324
BpiI	GAAGAC	2 cut(s)	520, 854
Bpu10I	CCTNAGC	1 cut(s)	1254
Bpu1102I	GCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	2 cut(s)	158, 938
BsaBI	GATNNNNATC	2 cut(s)	321, 774
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	96, 818, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	518, 933
Bse8I	GATNNNNATC	2 cut(s)	321, 774
BseBI	CCWGG	2 cut(s)	819, 1012
BseDI	CCNNGG	3 cut(s)	96, 818, 1010
BseGI	GGATG	5 cut(s)	106, 247, 298, 466, 1193
BseJI	GATNNNNATC	2 cut(s)	321, 774
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	3 cut(s)	771, 1155, 1305
BseNI	ACTGG	2 cut(s)	518, 933
BseSI	GKGCMC	2 cut(s)	11, 1011
BseXI	GCAGC	2 cut(s)	288, 640
BsgI	GTGCAG	4 cut(s)	623, 714, 993, 1299
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	9, 31, 140, 1009
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	776
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	9, 31, 140, 1009
Bso31I	GGTCTC	1 cut(s)	776
Bsp120I	GGGCCC	2 cut(s)	7, 1007
Bsp1286I	GDGCHC	2 cut(s)	11, 1011
Bsp143I	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
Bsp1720I	GCTNAGC	1 cut(s)	1116
BspACI	CCGC	3 cut(s)	106, 748, 1181
BspANI	GGCC	4 cut(s)	9, 31, 140, 1009
BspCNI	CTCAG	3 cut(s)	772, 1156, 1304
BspLI	GGNNCC	4 cut(s)	9, 421, 1008, 1009
BspMI	ACCTGC	2 cut(s)	1060, 1126
BspPI	GGATC	4 cut(s)	542, 588, 854, 1180
BspQI	GCTCTTC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	518, 933
BssECI	CCNNGG	3 cut(s)	96, 818, 1010
BssMI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
BssSI	CACGAG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	819, 1012
Bst4CI	ACNGT	2 cut(s)	844, 1091
Bst6I	CTCTTC	3 cut(s)	243, 1205, 1242
BstAPI	GCANNNNNTGC	2 cut(s)	1061, 1277
BstC8I	GCNNGC	3 cut(s)	1062, 1273, 1353
BstDEI	CTNAG	7 cut(s)	688, 780, 1043, 1116, 1164, 1254, 1291
BstF5I	GGATG	5 cut(s)	106, 247, 298, 466, 1193
BstKTI	GATC	6 cut(s)	19, 550, 583, 862, 979, 1175
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 213, 266, 1061, 1066, 1272, 1277, 1334
BstNI	CCWGG	2 cut(s)	819, 1012
BstSCI	CCNGG	2 cut(s)	817, 1010
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	2 cut(s)	11, 1011
BstV1I	GCAGC	2 cut(s)	288, 640
BstV2I	GAAGAC	2 cut(s)	520, 854
BstX2I	RGATCY	2 cut(s)	547, 1172
BstYI	RGATCY	2 cut(s)	547, 1172
BsuRI	GGCC	4 cut(s)	9, 31, 140, 1009
BtsCI	GGATG	5 cut(s)	106, 247, 298, 466, 1193
BtsIMutI	CAGTG	3 cut(s)	840, 940, 1096
BveI	ACCTGC	2 cut(s)	1060, 1126
Cac8I	GCNNGC	3 cut(s)	1062, 1273, 1353
Cfr13I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	645, 966
CviAII	CATG	5 cut(s)	33, 485, 494, 599, 884
CviQI	GTAC	2 cut(s)	645, 966
DdeI	CTNAG	7 cut(s)	688, 780, 1043, 1116, 1164, 1254, 1291
DpnI	GATC	6 cut(s)	18, 549, 582, 861, 978, 1174
DpnII	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
DraIII	CACNNNGTG	1 cut(s)	1061
DriI	GACNNNNNGTC	1 cut(s)	789
Eam1104I	CTCTTC	3 cut(s)	243, 1205, 1242
Eam1105I	GACNNNNNGTC	1 cut(s)	789
EarI	CTCTTC	3 cut(s)	243, 1205, 1242
Eco24I	GRGCYC	2 cut(s)	11, 1011
Eco31I	GGTCTC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	2 cut(s)	149, 1197
EcoO109I	RGGNCCY	2 cut(s)	1007, 1008
EcoRII	CCWGG	2 cut(s)	817, 1010
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	11, 1011
FaeI	CATG	5 cut(s)	36, 488, 497, 602, 887
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	32, 484, 493, 598, 883
FauNDI	CATATG	2 cut(s)	327, 381
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	302, 654
FokI	GGATG	5 cut(s)	113, 254, 305, 473, 1180
FriOI	GRGCYC	2 cut(s)	11, 1011
Fsp4HI	GCNGC	2 cut(s)	302, 654
FspBI	CTAG	2 cut(s)	27, 114
GluI	GCNGC	2 cut(s)	302, 654
HaeIII	GGCC	4 cut(s)	9, 31, 140, 1009
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	36, 488, 497, 602, 887
HincII	GTYRAC	1 cut(s)	1321
HindII	GTYRAC	1 cut(s)	1321
HindIII	AAGCTT	4 cut(s)	619, 1203, 1285, 1353
HinfI	GANTC	6 cut(s)	124, 210, 671, 880, 1166, 1234
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	779, 1061
Hpy166II	GTNNAC	2 cut(s)	153, 1321
Hpy188I	TCNGA	6 cut(s)	82, 97, 129, 424, 1000, 1177
Hpy188III	TCNNGA	9 cut(s)	175, 239, 343, 712, 779, 857, 1030, 1170, 1244
Hpy8I	GTNNAC	2 cut(s)	153, 1321
HpyAV	CCTTC	4 cut(s)	35, 130, 751, 1001
HpyCH4III	ACNGT	2 cut(s)	844, 1091
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 213, 266, 1061, 1066, 1272, 1277, 1334
HpyF3I	CTNAG	7 cut(s)	688, 780, 1043, 1116, 1164, 1254, 1291
Hsp92II	CATG	5 cut(s)	36, 488, 497, 602, 887
Kzo9I	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
LguI	GCTCTTC	1 cut(s)	243
Lsp1109I	GCAGC	2 cut(s)	288, 640
LweI	GCATC	5 cut(s)	256, 499, 919, 1202, 1324
MaeI	CTAG	2 cut(s)	27, 114
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	6 cut(s)	18, 549, 582, 861, 978, 1174
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
MflI	RGATCY	2 cut(s)	547, 1172
MhlI	GDGCHC	2 cut(s)	11, 1011
MlyI	GAGTC	4 cut(s)	118, 219, 1175, 1228
MmeI	TCCRAC	2 cut(s)	447, 1322
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	2 cut(s)	234, 1308
MseI	TTAA	4 cut(s)	162, 471, 807, 1077
MslI	CAYNNNNRTG	2 cut(s)	431, 495
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	819, 1012
MvaI	CCWGG	2 cut(s)	819, 1012
MwoI	GCNNNNNNNGC	8 cut(s)	146, 213, 266, 1061, 1066, 1272, 1277, 1334
NdeI	CATATG	2 cut(s)	327, 381
NdeII	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
NlaIII	CATG	5 cut(s)	36, 488, 497, 602, 887
NlaIV	GGNNCC	4 cut(s)	9, 421, 1008, 1009
NsiI	ATGCAT	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	2 cut(s)	234, 1308
PfeI	GAWTC	2 cut(s)	671, 880
PkrI	GCNGC	2 cut(s)	303, 655
Ple19I	CGATCG	1 cut(s)	19
PleI	GAGTC	4 cut(s)	118, 218, 1174, 1228
PpsI	GAGTC	4 cut(s)	118, 218, 1174, 1228
PshBI	ATTAAT	1 cut(s)	807
Psp6I	CCWGG	2 cut(s)	817, 1010
PspGI	CCWGG	2 cut(s)	817, 1010
PspN4I	GGNNCC	4 cut(s)	9, 421, 1008, 1009
PspOMI	GGGCCC	2 cut(s)	7, 1007
PspPI	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
PsuI	RGATCY	2 cut(s)	547, 1172
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	646, 967
RsaNI	GTAC	2 cut(s)	645, 966
RseI	CAYNNNNRTG	2 cut(s)	431, 495
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	162, 471, 807, 1077
SatI	GCNGC	2 cut(s)	302, 654
Sau3AI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
Sau96I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
SchI	GAGTC	4 cut(s)	118, 219, 1175, 1228
ScrFI	CCNGG	2 cut(s)	819, 1012
SduI	GDGCHC	2 cut(s)	11, 1011
SfaNI	GCATC	5 cut(s)	256, 499, 919, 1202, 1324
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	431, 495
SmlI	CTYRAG	2 cut(s)	173, 917
SmoI	CTYRAG	2 cut(s)	173, 917
SsiI	CCGC	3 cut(s)	106, 748, 1181
SspMI	CTAG	2 cut(s)	27, 114
StyD4I	CCNGG	2 cut(s)	817, 1010
TaaI	ACNGT	2 cut(s)	844, 1091
TaqI	TCGA	4 cut(s)	15, 274, 360, 1243
TatI	WGTACW	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	671, 880
Tru1I	TTAA	4 cut(s)	162, 471, 807, 1077
Tru9I	TTAA	4 cut(s)	162, 471, 807, 1077
TscAI	CASTG	3 cut(s)	847, 940, 1096
TseI	GCWGC	2 cut(s)	301, 653
TspDTI	ATGAA	4 cut(s)	309, 790, 872, 1317
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	3 cut(s)	847, 940, 1096
VpaK11BI	GGWCC	1 cut(s)	815
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	4 cut(s)	158, 356, 947, 1100
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	2 cut(s)	234, 1308
XspI	CTAG	2 cut(s)	27, 114
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.