Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008261

Physical Location & Seq

Genomic Coordinates Reverse (-)

17676142 .. 17679761

Gene Structure 3620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATCGCTATGTGAAATACCATGTGCAGGAGTTTGAGAAAAGCTTTGCAATAAAGTTTCCGTCTTGTACTATTGCTGCAAAGAGGCACATAGATTCAAGCACTACAATCTTAGATGTTCAAGGCGTGGGCTTCAAGAACTTTACAAAGTCTGCACGAGAACTAATTATGCGGTTGCAGAAGGTTGATGGTGATAACTATCCTGAGACCCTCTGTCAAATGTTCATCATTAATGCTGGTCCTGGGTTTAGGCTTCTGTGGAACACTGTGAAGACTTTTCTTGATCCTAAAACAACATCAAAGATTCATGTTCTTGGAAACAAATACCAAAGCAAATTGCTTGAGATAATTGATGCCAGTGAGTTGCCAGAATTTCTGGGTGGAAGCTGTACCTGTGCAGATCAGGGAGGTTGCCTTCGCTCTGATAGGGGGCCCTGGAAAAACCCTGACATCTTGAAGATGGTTCTTAGTGGTGAAGCACGGCGTGCAAGGCAGGTTGTTAAAGTCCTAAACAGTGAGGGGAAATTTCTTGCTTATGCTAAGCCACACTATCCAATGCAGGTAAAGGGTAGCGATACATCAACTGCTGAGTCGGGATCTGAAGCGGAGGATATTGCATCCCCGAAAGCTTTGAAGAGTTATTCACATCTTCGTTTGACTCCTGTTCGAGAAGAGGCTAAGGTCGTAGGCAAGGCAAGCTGTGCAGGAAGCTTCTCAGGTTATGATGAATATGTTCCTATGGTTGACAAAGCTGTTGATGCTGGTTGGAAAAAGCAAGCTTCTCTGCAAAAATCTCATTCTCCCAAAGGAACACTTCCAGTACCTAACATCCCAAAAGATCCAGAAGGAATTCGAGCTCGGATTTTGGTAGCGGTTATGGCCTTCTTCCTGACTTTTCTCACACTCTTCCGCTCAGTTGCTTCCCACATAACTAGGAAGCTTCCTGACACATTGGCTAATAAAGAACAAAATGTTACTGAACCAACTTTTGATGCAACAAACAAGGAAGAGTGCAGTCCTCCTTCACCAAAATCACCATTTGCAGGGGTAGATCTTCTTCCCACTGTACTGAAGAAACTGGCTGAGCTTGAGGAGAAAGTTGATACGCTCCAATCTAAACCATCTGAGATGCCTTATGAGAAGGAGGAATTGCTGAATGCTGCTGTTTGTCGTGTGGATGCCTTGGAAGCAGAGTTAATTGCTACTAAAAAGGCTCTCCATGAAGCTTTAATGAGGCAAGAAGAGTTGCTGGCTTATATAGACAGGCAAGAAGAAGCCAAATTCAGGAAAAAGAAGTTTTGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

435

Amino Acids

48.54

Weight (kDa)

8.74

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	21 - 128	5.1e-22	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21520 AT2G21520 AT2G21520 AT4G39170 AT4G39170
fragaria_vesca	FvH4_2g09500
malus_domestica	MD05G1062600.v1.1 MD10G1070300.v1.1
prunus_persica	Prupe.8G091900_v2.0.a1 Prupe.8G091900_v2.0.a1
pyrus_communis	pycom05g05420 pycom10g05610
rosa_chinensis	RchiOBHm_Chr6g0265801
rosa_laevigata	RLG00000014159
rosa_multiflora	Rmu_sc0000208.1_g000031
rosa_roxburghii	Rroxscaffold_7G00202380
rosa_rugosa	Rorug06G0019600 Rorug06G0019700
rosa_samantha	Rh6AG141700 Rh6BG141700 Rh6CG138300 Rh6DG125300
rosa_wichuraiana	Rw6G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	484, 550
AccBSI	CCGCTC	1 cut(s)	912
AciI	CCGC	4 cut(s)	172, 605, 872, 910
AclWI	GGATC	4 cut(s)	12, 278, 604, 833
AcsI	RAATTY	4 cut(s)	371, 524, 849, 1280
AcuI	CTGAAG	2 cut(s)	621, 1091
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	4 cut(s)	70, 391, 822, 1068
AfiI	CCNNNNNNNGG	3 cut(s)	28, 1043, 1284
AgsI	TTSAA	5 cut(s)	99, 122, 136, 457, 634
AhdI	GACNNNNNGTC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	241, 434
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	4 cut(s)	12, 278, 604, 833
AoxI	GGCC	2 cut(s)	431, 879
ApaI	GGGCCC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	77, 1160
ApoI	RAATTY	4 cut(s)	371, 524, 849, 1280
AseI	ATTAAT	1 cut(s)	231
Asp700I	GAANNNNTTC	2 cut(s)	732, 849
AspS9I	GGNCC	3 cut(s)	239, 431, 432
AsuHPI	GGTGA	4 cut(s)	203, 485, 1017, 1026
AvaII	GGWCC	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	435
BanII	GRGCYC	2 cut(s)	435, 859
BarI	GAAGNNNNNNTAC	2 cut(s)	1041, 1073
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	2 cut(s)	64, 1147
BccI	CCATC	3 cut(s)	182, 454, 1129
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	243, 436
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	933
BfuAI	ACCTGC	2 cut(s)	484, 550
BglII	AGATCT	1 cut(s)	1051
BisI	GCNGC	2 cut(s)	78, 1161
BlpI	GCTNAGC	2 cut(s)	540, 1083
BlsI	GCNGC	2 cut(s)	79, 1162
Bme1390I	CCNGG	2 cut(s)	243, 436
Bme18I	GGWCC	1 cut(s)	239
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	239, 431, 432
BmiI	GGNNCC	2 cut(s)	432, 433
BmrFI	CCNGG	2 cut(s)	243, 436
BmsI	GCATC	6 cut(s)	343, 626, 748, 982, 1119, 1168
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	2 cut(s)	540, 1083
BpuEI	CTTGAG	2 cut(s)	362, 1109
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	242, 434, 1182
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 1043, 1284
Bse1I	ACTGG	3 cut(s)	357, 818, 1083
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	243, 436
BseDI	CCNNGG	3 cut(s)	242, 434, 1182
BseGI	GGATG	3 cut(s)	617, 828, 1183
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	28, 1043, 1284
BseMII	CTCAG	6 cut(s)	195, 579, 729, 927, 1074, 1116
BseNI	ACTGG	3 cut(s)	357, 818, 1083
BseRI	GAGGAG	1 cut(s)	1106
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	64, 1147
BsgI	GTGCAG	5 cut(s)	47, 138, 417, 723, 1033
BshFI	GGCC	2 cut(s)	433, 881
BsiHKAI	GWGCWC	1 cut(s)	859
BslI	CCNNNNNNNGG	3 cut(s)	28, 1043, 1284
BsmAI	GTCTC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	1162
BsnI	GGCC	2 cut(s)	433, 881
Bso31I	GGTCTC	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	435, 859
Bsp143I	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
Bsp1720I	GCTNAGC	2 cut(s)	540, 1083
BspACI	CCGC	4 cut(s)	172, 605, 872, 910
BspANI	GGCC	2 cut(s)	433, 881
BspCNI	CTCAG	6 cut(s)	196, 580, 728, 926, 1075, 1117
BspLI	GGNNCC	2 cut(s)	432, 433
BspMI	ACCTGC	2 cut(s)	484, 550
BspPI	GGATC	4 cut(s)	12, 278, 604, 833
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	912
BsrI	ACTGG	3 cut(s)	357, 818, 1083
BssECI	CCNNGG	3 cut(s)	242, 434, 1182
BssMI	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	1182
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	243, 436
Bst4CI	ACNGT	3 cut(s)	268, 515, 1066
Bst6I	CTCTTC	5 cut(s)	629, 666, 911, 1002, 1236
BstAPI	GCANNNNNTGC	2 cut(s)	485, 701
BstC8I	GCNNGC	4 cut(s)	486, 697, 777, 1251
BstF5I	GGATG	3 cut(s)	617, 828, 1183
BstKTI	GATC	6 cut(s)	7, 286, 403, 599, 841, 1054
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
BstMWI	GCNNNNNNNGC	7 cut(s)	485, 490, 696, 701, 758, 878, 1187
BstNI	CCWGG	2 cut(s)	243, 436
BstSCI	CCNGG	2 cut(s)	241, 434
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	64, 1147
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	3 cut(s)	596, 838, 1051
BstYI	RGATCY	3 cut(s)	596, 838, 1051
BsuRI	GGCC	2 cut(s)	433, 881
BtsCI	GGATG	3 cut(s)	617, 828, 1183
BtsIMutI	CAGTG	4 cut(s)	264, 364, 520, 1062
BveI	ACCTGC	2 cut(s)	484, 550
Cac8I	GCNNGC	4 cut(s)	486, 697, 777, 1251
Cfr13I	GGNCC	3 cut(s)	239, 431, 432
Csp6I	GTAC	4 cut(s)	69, 390, 821, 1067
CviAII	CATG	3 cut(s)	23, 308, 1220
CviQI	GTAC	4 cut(s)	69, 390, 821, 1067
DpnI	GATC	6 cut(s)	6, 285, 402, 598, 840, 1053
DpnII	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
DraIII	CACNNNGTG	1 cut(s)	485
DriI	GACNNNNNGTC	1 cut(s)	213
Eam1104I	CTCTTC	5 cut(s)	629, 666, 911, 1002, 1236
Eam1105I	GACNNNNNGTC	1 cut(s)	213
EarI	CTCTTC	5 cut(s)	629, 666, 911, 1002, 1236
Ecl136II	GAGCTC	1 cut(s)	857
Eco130I	CCWWGG	1 cut(s)	1182
Eco24I	GRGCYC	2 cut(s)	435, 859
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	857
Eco57I	CTGAAG	2 cut(s)	621, 1091
EcoICRI	GAGCTC	1 cut(s)	857
EcoO109I	RGGNCCY	2 cut(s)	431, 432
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	241, 434
EcoT14I	CCWWGG	1 cut(s)	1182
EcoT38I	GRGCYC	2 cut(s)	435, 859
ErhI	CCWWGG	1 cut(s)	1182
FaeI	CATG	3 cut(s)	26, 311, 1223
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FatI	CATG	3 cut(s)	22, 307, 1219
Fnu4HI	GCNGC	2 cut(s)	78, 1161
FokI	GGATG	3 cut(s)	604, 815, 1190
FriOI	GRGCYC	2 cut(s)	435, 859
Fsp4HI	GCNGC	2 cut(s)	78, 1161
FspBI	CTAG	1 cut(s)	933
GluI	GCNGC	2 cut(s)	78, 1161
HaeIII	GGCC	2 cut(s)	433, 881
Hin1II	CATG	3 cut(s)	26, 311, 1223
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	6 cut(s)	43, 627, 709, 777, 938, 1224
HinfI	GANTC	4 cut(s)	95, 304, 590, 658
HphI	GGTGA	4 cut(s)	203, 485, 1017, 1026
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	4 cut(s)	424, 601, 861, 1126
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	6 cut(s)	175, 425, 839, 892, 1032, 1135
HpyCH4III	ACNGT	3 cut(s)	268, 515, 1066
HpyF10VI	GCNNNNNNNGC	7 cut(s)	485, 490, 696, 701, 758, 878, 1187
Hsp92II	CATG	3 cut(s)	26, 311, 1223
Kzo9I	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
LmnI	GCTCC	1 cut(s)	1113
Lsp1109I	GCAGC	2 cut(s)	64, 1147
LweI	GCATC	6 cut(s)	343, 626, 748, 982, 1119, 1168
MaeI	CTAG	1 cut(s)	933
MaeIII	GTNAC	1 cut(s)	973
MalI	GATC	6 cut(s)	6, 285, 402, 598, 840, 1053
MbiI	CCGCTC	1 cut(s)	912
MboI	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
MflI	RGATCY	3 cut(s)	596, 838, 1051
MhlI	GDGCHC	2 cut(s)	435, 859
MluCI	AATT	9 cut(s)	165, 335, 348, 371, 524, 849, 1148, 1197, 1280
MlyI	GAGTC	2 cut(s)	599, 652
MmeI	TCCRAC	1 cut(s)	746
MroXI	GAANNNNTTC	2 cut(s)	732, 849
MseI	TTAA	4 cut(s)	231, 501, 1196, 1229
MspR9I	CCNGG	2 cut(s)	243, 436
Mva1269I	GAATGC	1 cut(s)	1162
MvaI	CCWGG	2 cut(s)	243, 436
MwoI	GCNNNNNNNGC	7 cut(s)	485, 490, 696, 701, 758, 878, 1187
NdeII	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
NlaIII	CATG	3 cut(s)	26, 311, 1223
NlaIV	GGNNCC	2 cut(s)	432, 433
PctI	GAATGC	1 cut(s)	1162
PdmI	GAANNNNTTC	2 cut(s)	732, 849
PfeI	GAWTC	2 cut(s)	95, 304
PkrI	GCNGC	2 cut(s)	79, 1162
PleI	GAGTC	2 cut(s)	598, 652
PpsI	GAGTC	2 cut(s)	598, 652
PshBI	ATTAAT	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	241, 434
PspGI	CCWGG	2 cut(s)	241, 434
PspN4I	GGNNCC	2 cut(s)	432, 433
PspOMI	GGGCCC	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	239, 431, 432
PsuI	RGATCY	3 cut(s)	596, 838, 1051
RsaI	GTAC	4 cut(s)	70, 391, 822, 1068
RsaNI	GTAC	4 cut(s)	69, 390, 821, 1067
SacI	GAGCTC	1 cut(s)	859
SaqAI	TTAA	4 cut(s)	231, 501, 1196, 1229
SatI	GCNGC	2 cut(s)	78, 1161
Sau3AI	GATC	6 cut(s)	4, 283, 400, 596, 838, 1051
Sau96I	GGNCC	3 cut(s)	239, 431, 432
SchI	GAGTC	2 cut(s)	599, 652
ScrFI	CCNGG	2 cut(s)	243, 436
SduI	GDGCHC	2 cut(s)	435, 859
SfaNI	GCATC	6 cut(s)	343, 626, 748, 982, 1119, 1168
SinI	GGWCC	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	341, 1088
SmoI	CTYRAG	2 cut(s)	341, 1088
Sse9I	AATT	9 cut(s)	165, 335, 348, 371, 524, 849, 1148, 1197, 1280
SsiI	CCGC	4 cut(s)	172, 605, 872, 910
SspMI	CTAG	1 cut(s)	933
SstI	GAGCTC	1 cut(s)	859
StyD4I	CCNGG	2 cut(s)	241, 434
StyI	CCWWGG	1 cut(s)	1182
TaaI	ACNGT	3 cut(s)	268, 515, 1066
TaqI	TCGA	2 cut(s)	667, 853
TasI	AATT	9 cut(s)	165, 335, 348, 371, 524, 849, 1148, 1197, 1280
TatI	WGTACW	2 cut(s)	68, 1066
TfiI	GAWTC	2 cut(s)	95, 304
Tru1I	TTAA	4 cut(s)	231, 501, 1196, 1229
Tru9I	TTAA	4 cut(s)	231, 501, 1196, 1229
TscAI	CASTG	4 cut(s)	271, 364, 520, 1069
TseI	GCWGC	2 cut(s)	77, 1160
TspDTI	ATGAA	4 cut(s)	214, 296, 741, 1236
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	4 cut(s)	271, 364, 520, 1069
VpaK11BI	GGWCC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	4 cut(s)	371, 524, 849, 1280
XmnI	GAANNNNTTC	2 cut(s)	732, 849
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.