Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008261

Physical Location & Seq

Genomic Coordinates Reverse (-)

2513927 .. 2514717

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGCGTAGTCGTTTGATATTTGGGTTGGCCTTTACTATCCTTCTAACCATCGTCACCACACCTTCGCACTGCAAATACCACTCAAAAACAGTCCCTGTAGACCGCCTCAAAGAGAAAGTCACGCAACTCCACTTCTACCTCTTCGACATCCTCAGCGGCACCAAACCCAGCGCCGTGGAGATCGCACGTCCGAACGTCACCACTGACAAGTCAGCCACCCCTTTCGGGAGCCTCTATGCCTTCGATGACCATCTCCGAGAGGGCCCCGAGACCAACTCATCGATAGTGGGGAATGCGAAGGGGCTCTACTTGTCCGCAAGCCAAGACCCAGCTAACTTTACAATCGTGATGTACGCAGATTTCGGTTTTACTACCGGTAAGTTTAAAGGGAGCTCATTTGGCGTGTTTTCAAGGAATCCAGTGGCTGAGTCACCGGAGCGGGAGGTGGCTGTGGTTGGTGGGAGAGGGAAGTTTAGGCTAGCTAGAGGGTTTGCTAGGGTGAAGACTCATTACTTCAATGCTACTAATGGTGATGCCATTTTGGAGTATAAGGCAACCATCATTCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

191

Amino Acids

21.11

Weight (kDa)

9.43

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	41 - 188	1e-47	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21520 AT2G21520 AT2G21520 AT4G39170 AT4G39170
fragaria_vesca	FvH4_2g09500
malus_domestica	MD05G1062600.v1.1 MD10G1070300.v1.1
prunus_persica	Prupe.8G091900_v2.0.a1 Prupe.8G091900_v2.0.a1
pyrus_communis	pycom05g05420 pycom10g05610
rosa_chinensis	RchiOBHm_Chr6g0265801
rosa_laevigata	RLG00000014159
rosa_multiflora	Rmu_sc0000208.1_g000031
rosa_roxburghii	Rroxscaffold_7G00202380
rosa_rugosa	Rorug06G0019600 Rorug06G0019700
rosa_samantha	Rh6AG141700 Rh6BG141700 Rh6CG138300 Rh6DG125300
rosa_wichuraiana	Rw6G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	4 cut(s)	106, 159, 318, 442
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	414, 520
AjiI	CACGTC	1 cut(s)	191
AluBI	AGCT	3 cut(s)	335, 396, 485
AluI	AGCT	3 cut(s)	335, 396, 485
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	266
AlwNI	CAGNNNCTG	2 cut(s)	98, 428
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	30, 265
ApaI	GGGCCC	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	265, 266
AsuHPI	GGTGA	5 cut(s)	49, 193, 426, 514, 545
AsuNHI	GCTAGC	1 cut(s)	481
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	3 cut(s)	269, 309, 398
BarI	GAAGNNNNNNTAC	4 cut(s)	293, 325, 497, 529
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	155
BccI	CCATC	3 cut(s)	59, 261, 569
BceAI	ACGGC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	3 cut(s)	482, 486, 498
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	265, 266
BmiI	GGNNCC	4 cut(s)	163, 233, 267, 268
BmsI	GCATC	1 cut(s)	526
BmtI	GCTAGC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu10I	CCTNAGC	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	2 cut(s)	377, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	422
Bse8I	GATNNNNATC	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	169, 420
BseNI	ACTGG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	269
BseYI	CCCAGC	2 cut(s)	170, 331
BshFI	GGCC	2 cut(s)	32, 267
BshNI	GGYRCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	378, 437
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	32, 267
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	269
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	269, 309, 398
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	4 cut(s)	106, 159, 318, 442
BspANI	GGCC	2 cut(s)	32, 267
BspCNI	CTCAG	2 cut(s)	168, 421
BspDI	ATCGAT	1 cut(s)	284
BspLI	GGNNCC	4 cut(s)	163, 233, 267, 268
BspOI	GCTAGC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	322, 483
BstDEI	CTNAG	2 cut(s)	155, 429
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	32, 267
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	70, 204, 429
Cac8I	GCNNGC	2 cut(s)	322, 483
CaiI	CAGNNNCTG	2 cut(s)	98, 428
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	265, 266
ClaI	ATCGAT	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	377
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	155, 429
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DraI	TTTAAA	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	3 cut(s)	269, 309, 398
Eco31I	GGTCTC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	265, 266
EcoT38I	GRGCYC	3 cut(s)	269, 309, 398
FaiI	YATR	2 cut(s)	240, 552
FaqI	GGGAC	1 cut(s)	80
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	3 cut(s)	269, 309, 398
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	3 cut(s)	482, 486, 498
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	160
GsaI	CCCAGC	2 cut(s)	174, 335
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	32, 267
HapII	CCGG	2 cut(s)	378, 437
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	418, 431, 508
HpaII	CCGG	2 cut(s)	378, 437
HphI	GGTGA	5 cut(s)	49, 193, 426, 514, 545
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	195, 260
Hpy188III	TCNNGA	2 cut(s)	229, 349
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	53, 75, 253, 295
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	2 cut(s)	190, 198
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	2 cut(s)	155, 429
HpySE526I	ACGT	2 cut(s)	190, 198
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	4 cut(s)	4, 231, 393, 439
LpnPI	CCDG	6 cut(s)	111, 184, 345, 391, 435, 450
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	3 cut(s)	482, 486, 498
MaeII	ACGT	2 cut(s)	190, 198
MaeIII	GTNAC	4 cut(s)	55, 121, 199, 432
MalI	GATC	1 cut(s)	185
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	1 cut(s)	183
MboII	GAAGA	2 cut(s)	136, 517
MhlI	GDGCHC	3 cut(s)	269, 309, 398
MlyI	GAGTC	2 cut(s)	440, 502
MnlI	CCTC	8 cut(s)	119, 152, 164, 245, 256, 439, 461, 482
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	2 cut(s)	378, 437
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	402
NdeII	GATC	1 cut(s)	183
NheI	GCTAGC	1 cut(s)	481
NlaIV	GGNNCC	4 cut(s)	163, 233, 267, 268
NmuCI	GTSAC	4 cut(s)	55, 121, 199, 432
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	439, 502
PpsI	GAGTC	2 cut(s)	439, 502
Psp124BI	GAGCTC	1 cut(s)	398
PspFI	CCCAGC	2 cut(s)	170, 331
PspN4I	GGNNCC	4 cut(s)	163, 233, 267, 268
PspOMI	GGGCCC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	265, 266
PstNI	CAGNNNCTG	2 cut(s)	98, 428
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	265, 266
SchI	GAGTC	2 cut(s)	440, 502
SduI	GDGCHC	3 cut(s)	269, 309, 398
SetI	ASST	8 cut(s)	67, 144, 193, 201, 337, 398, 450, 487
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	99
SsiI	CCGC	4 cut(s)	106, 159, 318, 442
SspMI	CTAG	3 cut(s)	482, 486, 498
SstI	GAGCTC	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	2 cut(s)	193, 201
TaqI	TCGA	3 cut(s)	147, 246, 284
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	77, 211, 429
TseFI	GTSAC	4 cut(s)	55, 121, 199, 432
Tsp45I	GTSAC	4 cut(s)	55, 121, 199, 432
TspRI	CASTG	3 cut(s)	77, 211, 429
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	482, 486, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.