Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008261

Physical Location & Seq

Genomic Coordinates Reverse (-)

21968978 .. 21989565

Gene Structure 20588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCTGATTGTCATGAAGATTTTGAGTTCAAAGAATTGGATGATGTTCTTGACTATTATCCTCATGGGCATCATGGTGTGGATAAGGAGGGAAGACCAGTTTATATTGAAAGGTTAGGGAAAGTAGAACCCAACAAACTAATGCAAGTTACCACTATGGATCGCTATGTGAAATACCATGTGCAGGAGTTTGAGAAAAGCTTTGCAATAAAGTTTCCAGCTTGTACTATTGCTGCAAAGAGGCACATAGATTCAAGCACTACAATCTTAGATGTTCAAGGCGTGGGCTTCAAGAACTTTACAAAGTCTGCACGAGAACTAATTATGCGGTTGCAGAAGGTTGATGGTGATAACTATCCTGAGATGGTTCTCAGTGGTGAAGCACGGCGTGCAAGGCAGGTTGTTAAAGTCCTAAACAGTGAGGGGAAATTTCTTGCTTATGCTAAGCCACACTATCCAATGCAGGTAAAGGGTAGCGATACATCAACCGCTGAGTCGGGATCTGAAGCGGAGGATATTGCATCCCCGAAAGCTTTGAAGAGTTATTCACATCTTCGATTGACTCCTGTTCGAGAAGAGGCTAAGGTCGTAGGCAAGGCAAGCTGTGCAGGAAGCTTCTCAGGTTATGATGAATATGTTCCTATGGTTGACAAAGCTGTTGATGCTGGTTGGAAAAAGCAAGCTTCTCTGCAAAAATCTCATTCTCCCAAAGGAACACTTCCAGTACCTAACATCCCAAAAGATCCAGAAGGAATTCGAGCTCGGATTTTGGTAGCGGTTATGGCCTTCTTCCTGACTTTTCTCACACTCTTCCGCTCAGTTGCTTCCCACATAACTAGGAAGCTTCCTGACACATTGGCTAATAAAGAACAAAATGTTACTGAACCAACTTTTGATGCAACAAACAAGGAAGAGTGCAGTCCTCCTTCACCAAAATCACCATTTGCAGGGGTAGATCTTCTTCCCACTGTACTGAAGAAACTGGCTGAGCTTGAGGAGAAAGTTGATACGCTCCAATCTAAACCATCTGAGATGCCTTATGAGAAGGAGGAATTGCTGAATGCTGCTGTTTGTCGTGTGGATGCCTTGGAAGCAGAGTTAATTGCTACTAAAAAGGCTCTCCATGAAGCTCTAATGAGGCAAGAAGAGTTGCTGGCTTATATAGACAGGCAAGAAGAAGCCAAATTCCGGAAAAAGAAGTTTTGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

403

Amino Acids

45.31

Weight (kDa)

6.85

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	19 - 122	1.2e-08	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21520 AT2G21520 AT2G21520 AT4G39170 AT4G39170
fragaria_vesca	FvH4_2g09500
malus_domestica	MD05G1062600.v1.1 MD10G1070300.v1.1
prunus_persica	Prupe.8G091900_v2.0.a1 Prupe.8G091900_v2.0.a1
pyrus_communis	pycom05g05420 pycom10g05610
rosa_chinensis	RchiOBHm_Chr6g0265801
rosa_laevigata	RLG00000014159
rosa_multiflora	Rmu_sc0000208.1_g000031
rosa_roxburghii	Rroxscaffold_7G00202380
rosa_rugosa	Rorug06G0019600 Rorug06G0019700
rosa_samantha	Rh6AG141700 Rh6BG141700 Rh6CG138300 Rh6DG125300
rosa_wichuraiana	Rw6G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	388, 454
AccBSI	CCGCTC	1 cut(s)	816
AccIII	TCCGGA	1 cut(s)	1188
AciI	CCGC	5 cut(s)	328, 489, 509, 776, 814
AclWI	GGATC	3 cut(s)	168, 508, 737
AcsI	RAATTY	3 cut(s)	428, 753, 1184
AcuI	CTGAAG	2 cut(s)	525, 995
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	226, 726, 972
AfiI	CCNNNNNNNGG	3 cut(s)	184, 947, 1188
AgsI	TTSAA	6 cut(s)	31, 110, 255, 278, 292, 538
Alw21I	GWGCWC	1 cut(s)	763
AlwI	GGATC	3 cut(s)	168, 508, 737
Aor13HI	TCCGGA	1 cut(s)	1188
AoxI	GGCC	1 cut(s)	783
ApeKI	GCWGC	2 cut(s)	233, 1064
ApoI	RAATTY	3 cut(s)	428, 753, 1184
Asp700I	GAANNNNTTC	2 cut(s)	636, 753
AsuHPI	GGTGA	4 cut(s)	359, 389, 921, 930
BanII	GRGCYC	1 cut(s)	763
BarI	GAAGNNNNNNTAC	2 cut(s)	945, 977
BauI	CACGAG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	220, 1051
BccI	CCATC	3 cut(s)	338, 358, 1033
BceAI	ACGGC	1 cut(s)	401
BfaI	CTAG	1 cut(s)	837
BfuAI	ACCTGC	2 cut(s)	388, 454
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	2 cut(s)	234, 1065
BlpI	GCTNAGC	2 cut(s)	444, 987
BlsI	GCNGC	2 cut(s)	235, 1066
BmsI	GCATC	6 cut(s)	79, 530, 652, 886, 1023, 1072
BpiI	GAAGAC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu1102I	GCTNAGC	2 cut(s)	444, 987
BpuEI	CTTGAG	1 cut(s)	1013
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	1086
BsaWI	WCCGGW	1 cut(s)	1188
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 947, 1188
Bse1I	ACTGG	3 cut(s)	98, 722, 987
Bse8I	GATNNNNATC	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	1188
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	4 cut(s)	46, 521, 732, 1087
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	184, 947, 1188
BseMII	CTCAG	7 cut(s)	351, 385, 483, 633, 831, 978, 1020
BseNI	ACTGG	3 cut(s)	98, 722, 987
BseRI	GAGGAG	1 cut(s)	1010
BseXI	GCAGC	2 cut(s)	220, 1051
BsgI	GTGCAG	4 cut(s)	203, 294, 627, 937
BshFI	GGCC	1 cut(s)	785
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	1189
BslI	CCNNNNNNNGG	3 cut(s)	184, 947, 1188
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp13I	TCCGGA	1 cut(s)	1188
Bsp143I	GATC	4 cut(s)	160, 500, 742, 955
Bsp1720I	GCTNAGC	2 cut(s)	444, 987
BspACI	CCGC	5 cut(s)	328, 489, 509, 776, 814
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	7 cut(s)	352, 384, 484, 632, 830, 979, 1021
BspEI	TCCGGA	1 cut(s)	1188
BspHI	TCATGA	1 cut(s)	13
BspMI	ACCTGC	2 cut(s)	388, 454
BspPI	GGATC	3 cut(s)	168, 508, 737
BsrBI	CCGCTC	1 cut(s)	816
BsrI	ACTGG	3 cut(s)	98, 722, 987
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	4 cut(s)	160, 500, 742, 955
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	1086
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	419, 970
Bst6I	CTCTTC	5 cut(s)	533, 570, 815, 906, 1140
BstAPI	GCANNNNNTGC	2 cut(s)	389, 605
BstC8I	GCNNGC	4 cut(s)	390, 601, 681, 1155
BstF5I	GGATG	4 cut(s)	46, 521, 732, 1087
BstKTI	GATC	4 cut(s)	163, 503, 745, 958
BstMBI	GATC	4 cut(s)	160, 500, 742, 955
BstMWI	GCNNNNNNNGC	7 cut(s)	389, 394, 600, 605, 662, 782, 1091
BstV1I	GCAGC	2 cut(s)	220, 1051
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	3 cut(s)	500, 742, 955
BstYI	RGATCY	3 cut(s)	500, 742, 955
BsuRI	GGCC	1 cut(s)	785
BtsCI	GGATG	4 cut(s)	46, 521, 732, 1087
BtsIMutI	CAGTG	3 cut(s)	379, 424, 966
BveI	ACCTGC	2 cut(s)	388, 454
Cac8I	GCNNGC	4 cut(s)	390, 601, 681, 1155
CciI	TCATGA	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	225, 725, 971
CviAII	CATG	5 cut(s)	14, 65, 74, 179, 1124
CviQI	GTAC	3 cut(s)	225, 725, 971
DpnI	GATC	4 cut(s)	162, 502, 744, 957
DpnII	GATC	4 cut(s)	160, 500, 742, 955
DraIII	CACNNNGTG	1 cut(s)	389
Eam1104I	CTCTTC	5 cut(s)	533, 570, 815, 906, 1140
EarI	CTCTTC	5 cut(s)	533, 570, 815, 906, 1140
Ecl136II	GAGCTC	1 cut(s)	761
Eco130I	CCWWGG	1 cut(s)	1086
Eco24I	GRGCYC	1 cut(s)	763
Eco53kI	GAGCTC	1 cut(s)	761
Eco57I	CTGAAG	2 cut(s)	525, 995
EcoICRI	GAGCTC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	1086
EcoT38I	GRGCYC	1 cut(s)	763
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	5 cut(s)	17, 68, 77, 182, 1127
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FatI	CATG	5 cut(s)	13, 64, 73, 178, 1123
Fnu4HI	GCNGC	2 cut(s)	234, 1065
FokI	GGATG	4 cut(s)	53, 508, 719, 1094
FriOI	GRGCYC	1 cut(s)	763
Fsp4HI	GCNGC	2 cut(s)	234, 1065
FspBI	CTAG	1 cut(s)	837
GluI	GCNGC	2 cut(s)	234, 1065
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	1 cut(s)	1189
Hin1II	CATG	5 cut(s)	17, 68, 77, 182, 1127
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	5 cut(s)	199, 531, 613, 681, 842
HinfI	GANTC	3 cut(s)	251, 494, 562
HpaII	CCGG	1 cut(s)	1189
HphI	GGTGA	4 cut(s)	359, 389, 921, 930
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	3 cut(s)	505, 765, 1030
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	5 cut(s)	331, 743, 796, 936, 1039
HpyCH4III	ACNGT	2 cut(s)	419, 970
HpyF10VI	GCNNNNNNNGC	7 cut(s)	389, 394, 600, 605, 662, 782, 1091
Hsp92II	CATG	5 cut(s)	17, 68, 77, 182, 1127
Kpn2I	TCCGGA	1 cut(s)	1188
Kzo9I	GATC	4 cut(s)	160, 500, 742, 955
LmnI	GCTCC	1 cut(s)	1017
Lsp1109I	GCAGC	2 cut(s)	220, 1051
LweI	GCATC	6 cut(s)	79, 530, 652, 886, 1023, 1072
MaeI	CTAG	1 cut(s)	837
MaeIII	GTNAC	2 cut(s)	148, 877
MalI	GATC	4 cut(s)	162, 502, 744, 957
MbiI	CCGCTC	1 cut(s)	816
MboI	GATC	4 cut(s)	160, 500, 742, 955
MflI	RGATCY	3 cut(s)	500, 742, 955
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	7 cut(s)	35, 321, 428, 753, 1052, 1101, 1184
MlyI	GAGTC	2 cut(s)	503, 556
MmeI	TCCRAC	1 cut(s)	650
MroI	TCCGGA	1 cut(s)	1188
MroXI	GAANNNNTTC	2 cut(s)	636, 753
MseI	TTAA	2 cut(s)	405, 1100
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	1189
Mva1269I	GAATGC	1 cut(s)	1066
MwoI	GCNNNNNNNGC	7 cut(s)	389, 394, 600, 605, 662, 782, 1091
NdeII	GATC	4 cut(s)	160, 500, 742, 955
NlaIII	CATG	5 cut(s)	17, 68, 77, 182, 1127
PagI	TCATGA	1 cut(s)	13
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	2 cut(s)	636, 753
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	235, 1066
PleI	GAGTC	2 cut(s)	502, 556
PpsI	GAGTC	2 cut(s)	502, 556
Psp124BI	GAGCTC	1 cut(s)	763
PsuI	RGATCY	3 cut(s)	500, 742, 955
RsaI	GTAC	3 cut(s)	226, 726, 972
RsaNI	GTAC	3 cut(s)	225, 725, 971
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	763
SaqAI	TTAA	2 cut(s)	405, 1100
SatI	GCNGC	2 cut(s)	234, 1065
Sau3AI	GATC	4 cut(s)	160, 500, 742, 955
SchI	GAGTC	2 cut(s)	503, 556
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	6 cut(s)	79, 530, 652, 886, 1023, 1072
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	7 cut(s)	35, 321, 428, 753, 1052, 1101, 1184
SsiI	CCGC	5 cut(s)	328, 489, 509, 776, 814
SspMI	CTAG	1 cut(s)	837
SstI	GAGCTC	1 cut(s)	763
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	2 cut(s)	419, 970
TaqI	TCGA	3 cut(s)	556, 571, 757
TasI	AATT	7 cut(s)	35, 321, 428, 753, 1052, 1101, 1184
TatI	WGTACW	2 cut(s)	224, 970
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	405, 1100
Tru9I	TTAA	2 cut(s)	405, 1100
TscAI	CASTG	3 cut(s)	379, 424, 973
TseI	GCWGC	2 cut(s)	233, 1064
TspDTI	ATGAA	3 cut(s)	30, 645, 1140
TspRI	CASTG	3 cut(s)	379, 424, 973
XapI	RAATTY	3 cut(s)	428, 753, 1184
XmnI	GAANNNNTTC	2 cut(s)	636, 753
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.