Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008261

Physical Location & Seq

Genomic Coordinates Reverse (-)

17756460 .. 17762685

Gene Structure 6226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCGGGCCCACTCGATCGGTTCGCTAGGCCATGTTTTGAAGGGTTTTATGGTAGTGATGAGAAAAGAGAAAGGAAGTCTGATTTTGAGAACTCCGAGGATGAGCGGAGGACTAGAATTGGGACTCTGAAGAAGAAGGCCATAAATGCGTCTACTAAATTTAAGCACTCTCTCAAGAAAAAGGGTAGTAGAAGAAAAAGTGATGGCAGAGTCAGCTCTGTTTCTATTGAAGATGTTCGGGATGTTGAAGAGCTACAGGCTGTTGATGCATTTCGACAATCACTAATTTTGGATGAATTGCTGCCGGACAAACACGATGACTATCATATGATGTTGAGGTTCTTGAAAGCAAGGAAATTCGATGTTGAAAAAGCAAAGCATATGTGGGCTGATATGCTTCAATGGAGAAAGGAGTTCGGTTCCGACACTATTATGGAGGATTTTGAGTTCAAAGAATTGGATGATGTTCTTAACTATTATCCTCATGGGCATCATGGTGTGGATAAGGAGGGAAGACCAGTTTATATTGAAAGGTTAGGGAAAGTAGATCCCAACAAACTAATGCAAGTTACCACTATGGATCGCTATGTGAAATACCATGTGCAGGAGTTTGAGAAAAGCTTTGCAATAAAGTTTCCGTCTTGTACTATTGCTGCAAAGAGGCACATAGATTCAAGCACTACAATCTTAGATGTTCAAGGCGTGGGCTTCAAGAACTTTACAAAGTCTGCACGAGAACTAATTATGCGGTTGCAGAAGGTTGATGGTGATAACTATCCTGAGACCCTCTGTCAAATGTTCATCATTAATGCTGGTCCTGGGTTTAGGCTTCTGTGGAACACTGTGAAGACTTTTCTTGATCCTAAAACAACATCAAAGATTCATGTTCTTGGAAACAAATACCAAAGCAAATTGCTTGAGATAATTGATGCCAGTGAGTTGCCAGAATTTCTGGGTGGAAGCTGTACCTGTGCAGATCAGGGAGGTTGCCTTCGCTCTGATAGGGGGCCCTGGAAAAACCCTGACATCTTGAAGATGGTTCTTAGTGGTGAAGCACGGCGTGCAAGGCAGGTTGTTAAAGTCCTAAACAGTGAGGGGAAATTTCTTGCTTATGCTAAGCCACACTATCCAATGCAGGTAAAGGGTAGCGATACATCAACTGCTGAGTCGGGATCTGAAGCGGAGGATATTGCATCCCCGAAAGCTTTGAAGAGTTATTCACATCTTCGTTTGACTCCTGTTCGAGAAGAGGTAGGTTTAAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

422

Amino Acids

48.22

Weight (kDa)

8.85

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	103 - 131	1.4e-07	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	158 - 320	3.1e-30	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21520 AT2G21520 AT2G21520 AT4G39170 AT4G39170
fragaria_vesca	FvH4_2g09500
malus_domestica	MD05G1062600.v1.1 MD10G1070300.v1.1
prunus_persica	Prupe.8G091900_v2.0.a1 Prupe.8G091900_v2.0.a1
pyrus_communis	pycom05g05420 pycom10g05610
rosa_chinensis	RchiOBHm_Chr6g0265801
rosa_laevigata	RLG00000014159
rosa_multiflora	Rmu_sc0000208.1_g000031
rosa_roxburghii	Rroxscaffold_7G00202380
rosa_rugosa	Rorug06G0019600 Rorug06G0019700
rosa_samantha	Rh6AG141700 Rh6BG141700 Rh6CG138300 Rh6DG125300
rosa_wichuraiana	Rw6G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1060, 1126
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	3 cut(s)	106, 748, 1181
AclWI	GGATC	4 cut(s)	542, 588, 854, 1180
AcsI	RAATTY	4 cut(s)	158, 356, 947, 1100
AcuI	CTGAAG	2 cut(s)	149, 1197
AdeI	CACNNNGTG	1 cut(s)	1061
AfaI	GTAC	2 cut(s)	646, 967
AfiI	CCNNNNNNNGG	1 cut(s)	604
AhdI	GACNNNNNGTC	1 cut(s)	789
AjnI	CCWGG	2 cut(s)	817, 1010
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	5 cut(s)	216, 253, 621, 963, 1205
AluI	AGCT	5 cut(s)	216, 253, 621, 963, 1205
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	4 cut(s)	542, 588, 854, 1180
AoxI	GGCC	4 cut(s)	7, 29, 138, 1007
ApaI	GGGCCC	2 cut(s)	11, 1011
ApeKI	GCWGC	2 cut(s)	301, 653
ApoI	RAATTY	4 cut(s)	158, 356, 947, 1100
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
AsuHPI	GGTGA	2 cut(s)	779, 1061
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	11, 1011
BanII	GRGCYC	2 cut(s)	11, 1011
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	520, 854
BbvI	GCAGC	2 cut(s)	288, 640
BccI	CCATC	3 cut(s)	197, 758, 1030
BceAI	ACGGC	1 cut(s)	1073
BciT130I	CCWGG	2 cut(s)	819, 1012
BcoDI	GTCTC	1 cut(s)	776
BfaI	CTAG	2 cut(s)	27, 114
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	2 cut(s)	1060, 1126
BisI	GCNGC	2 cut(s)	302, 654
BlpI	GCTNAGC	1 cut(s)	1116
BlsI	GCNGC	2 cut(s)	303, 655
Bme1390I	CCNGG	2 cut(s)	819, 1012
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	789
BmgT120I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
BmiI	GGNNCC	4 cut(s)	9, 421, 1008, 1009
BmrFI	CCNGG	2 cut(s)	819, 1012
BmsI	GCATC	4 cut(s)	256, 499, 919, 1202
BpiI	GAAGAC	2 cut(s)	520, 854
Bpu1102I	GCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	2 cut(s)	158, 938
BsaBI	GATNNNNATC	2 cut(s)	321, 774
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	96, 818, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	518, 933
Bse8I	GATNNNNATC	2 cut(s)	321, 774
BseBI	CCWGG	2 cut(s)	819, 1012
BseDI	CCNNGG	3 cut(s)	96, 818, 1010
BseGI	GGATG	5 cut(s)	106, 247, 298, 466, 1193
BseJI	GATNNNNATC	2 cut(s)	321, 774
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	771, 1155
BseNI	ACTGG	2 cut(s)	518, 933
BseSI	GKGCMC	2 cut(s)	11, 1011
BseXI	GCAGC	2 cut(s)	288, 640
BsgI	GTGCAG	3 cut(s)	623, 714, 993
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	9, 31, 140, 1009
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	776
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	9, 31, 140, 1009
Bso31I	GGTCTC	1 cut(s)	776
Bsp120I	GGGCCC	2 cut(s)	7, 1007
Bsp1286I	GDGCHC	2 cut(s)	11, 1011
Bsp143I	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
Bsp1720I	GCTNAGC	1 cut(s)	1116
BspACI	CCGC	3 cut(s)	106, 748, 1181
BspANI	GGCC	4 cut(s)	9, 31, 140, 1009
BspCNI	CTCAG	2 cut(s)	772, 1156
BspLI	GGNNCC	4 cut(s)	9, 421, 1008, 1009
BspMI	ACCTGC	2 cut(s)	1060, 1126
BspPI	GGATC	4 cut(s)	542, 588, 854, 1180
BspQI	GCTCTTC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	518, 933
BssECI	CCNNGG	3 cut(s)	96, 818, 1010
BssMI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
BssSI	CACGAG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	819, 1012
Bst4CI	ACNGT	2 cut(s)	844, 1091
Bst6I	CTCTTC	3 cut(s)	243, 1205, 1242
BstAPI	GCANNNNNTGC	1 cut(s)	1061
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	5 cut(s)	688, 780, 1043, 1116, 1164
BstF5I	GGATG	5 cut(s)	106, 247, 298, 466, 1193
BstKTI	GATC	6 cut(s)	19, 550, 583, 862, 979, 1175
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 213, 266, 1061, 1066
BstNI	CCWGG	2 cut(s)	819, 1012
BstSCI	CCNGG	2 cut(s)	817, 1010
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	2 cut(s)	11, 1011
BstV1I	GCAGC	2 cut(s)	288, 640
BstV2I	GAAGAC	2 cut(s)	520, 854
BstX2I	RGATCY	2 cut(s)	547, 1172
BstYI	RGATCY	2 cut(s)	547, 1172
BsuRI	GGCC	4 cut(s)	9, 31, 140, 1009
BtsCI	GGATG	5 cut(s)	106, 247, 298, 466, 1193
BtsIMutI	CAGTG	3 cut(s)	840, 940, 1096
BveI	ACCTGC	2 cut(s)	1060, 1126
Cac8I	GCNNGC	1 cut(s)	1062
Cfr13I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	645, 966
CviAII	CATG	5 cut(s)	33, 485, 494, 599, 884
CviQI	GTAC	2 cut(s)	645, 966
DdeI	CTNAG	5 cut(s)	688, 780, 1043, 1116, 1164
DpnI	GATC	6 cut(s)	18, 549, 582, 861, 978, 1174
DpnII	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
DraIII	CACNNNGTG	1 cut(s)	1061
DriI	GACNNNNNGTC	1 cut(s)	789
Eam1104I	CTCTTC	3 cut(s)	243, 1205, 1242
Eam1105I	GACNNNNNGTC	1 cut(s)	789
EarI	CTCTTC	3 cut(s)	243, 1205, 1242
Eco24I	GRGCYC	2 cut(s)	11, 1011
Eco31I	GGTCTC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	2 cut(s)	149, 1197
EcoO109I	RGGNCCY	2 cut(s)	1007, 1008
EcoRII	CCWGG	2 cut(s)	817, 1010
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	11, 1011
FaeI	CATG	5 cut(s)	36, 488, 497, 602, 887
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	32, 484, 493, 598, 883
FauNDI	CATATG	2 cut(s)	327, 381
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	302, 654
FokI	GGATG	5 cut(s)	113, 254, 305, 473, 1180
FriOI	GRGCYC	2 cut(s)	11, 1011
Fsp4HI	GCNGC	2 cut(s)	302, 654
FspBI	CTAG	2 cut(s)	27, 114
GluI	GCNGC	2 cut(s)	302, 654
HaeIII	GGCC	4 cut(s)	9, 31, 140, 1009
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	36, 488, 497, 602, 887
HindIII	AAGCTT	2 cut(s)	619, 1203
HinfI	GANTC	6 cut(s)	124, 210, 671, 880, 1166, 1234
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	779, 1061
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	6 cut(s)	82, 97, 129, 424, 1000, 1177
Hpy188III	TCNNGA	9 cut(s)	175, 239, 343, 712, 779, 857, 1030, 1170, 1244
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	4 cut(s)	35, 130, 751, 1001
HpyCH4III	ACNGT	2 cut(s)	844, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 213, 266, 1061, 1066
HpyF3I	CTNAG	5 cut(s)	688, 780, 1043, 1116, 1164
Hsp92II	CATG	5 cut(s)	36, 488, 497, 602, 887
Kzo9I	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
LguI	GCTCTTC	1 cut(s)	243
Lsp1109I	GCAGC	2 cut(s)	288, 640
LweI	GCATC	4 cut(s)	256, 499, 919, 1202
MaeI	CTAG	2 cut(s)	27, 114
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	6 cut(s)	18, 549, 582, 861, 978, 1174
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
MflI	RGATCY	2 cut(s)	547, 1172
MhlI	GDGCHC	2 cut(s)	11, 1011
MlyI	GAGTC	4 cut(s)	118, 219, 1175, 1228
MmeI	TCCRAC	1 cut(s)	447
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	6 cut(s)	162, 471, 807, 1077, 1259, 1267
MslI	CAYNNNNRTG	2 cut(s)	431, 495
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	819, 1012
MvaI	CCWGG	2 cut(s)	819, 1012
MwoI	GCNNNNNNNGC	5 cut(s)	146, 213, 266, 1061, 1066
NdeI	CATATG	2 cut(s)	327, 381
NdeII	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
NlaIII	CATG	5 cut(s)	36, 488, 497, 602, 887
NlaIV	GGNNCC	4 cut(s)	9, 421, 1008, 1009
NsiI	ATGCAT	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	671, 880
PkrI	GCNGC	2 cut(s)	303, 655
Ple19I	CGATCG	1 cut(s)	19
PleI	GAGTC	4 cut(s)	118, 218, 1174, 1228
PpsI	GAGTC	4 cut(s)	118, 218, 1174, 1228
PshBI	ATTAAT	1 cut(s)	807
Psp6I	CCWGG	2 cut(s)	817, 1010
PspGI	CCWGG	2 cut(s)	817, 1010
PspN4I	GGNNCC	4 cut(s)	9, 421, 1008, 1009
PspOMI	GGGCCC	2 cut(s)	7, 1007
PspPI	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
PsuI	RGATCY	2 cut(s)	547, 1172
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	646, 967
RsaNI	GTAC	2 cut(s)	645, 966
RseI	CAYNNNNRTG	2 cut(s)	431, 495
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	6 cut(s)	162, 471, 807, 1077, 1259, 1267
SatI	GCNGC	2 cut(s)	302, 654
Sau3AI	GATC	6 cut(s)	16, 547, 580, 859, 976, 1172
Sau96I	GGNCC	5 cut(s)	7, 8, 815, 1007, 1008
SchI	GAGTC	4 cut(s)	118, 219, 1175, 1228
ScrFI	CCNGG	2 cut(s)	819, 1012
SduI	GDGCHC	2 cut(s)	11, 1011
SfaNI	GCATC	4 cut(s)	256, 499, 919, 1202
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	431, 495
SmlI	CTYRAG	2 cut(s)	173, 917
SmoI	CTYRAG	2 cut(s)	173, 917
SsiI	CCGC	3 cut(s)	106, 748, 1181
SspMI	CTAG	2 cut(s)	27, 114
StyD4I	CCNGG	2 cut(s)	817, 1010
TaaI	ACNGT	2 cut(s)	844, 1091
TaqI	TCGA	4 cut(s)	15, 274, 360, 1243
TatI	WGTACW	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	671, 880
Tru1I	TTAA	6 cut(s)	162, 471, 807, 1077, 1259, 1267
Tru9I	TTAA	6 cut(s)	162, 471, 807, 1077, 1259, 1267
TscAI	CASTG	3 cut(s)	847, 940, 1096
TseI	GCWGC	2 cut(s)	301, 653
TspDTI	ATGAA	3 cut(s)	309, 790, 872
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	3 cut(s)	847, 940, 1096
VpaK11BI	GGWCC	1 cut(s)	815
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	4 cut(s)	158, 356, 947, 1100
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	27, 114
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.