AT2G21860

Violaxanthin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
9318122 .. 9320024
1903 bp
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UTR
Exon/CDS
Intron
AT2G21860.1

Sequence Viewer

Length: 1569 bp
ATGGCGGCGATTCCTCTCAAAGCTCCTTCTCTTCCTGGAACGAGAGAGTGTTCTCCCTTCCTTAACCGGTTCGTCACTCATCAACCGGTTAATTTCATCCGGAAGTTTCATCCTTCCTTAGATGAAGCATCGTTCTCCAGACGGGGACGAACCACTGTTGTTCGCGTTTTGGAGACGGAGAAGAGTACGAAAATAGAGAAGCCTGAGCCTCCGGTGAAATTGATTGCTCTCGTCGGAAAAGGAGAAGTAAGCCCACTCAAATCCACCTCTTGGGAAGAAGTTATGCTCCACACTGCGAGAAGATTGAAATGGGTTGATGAAGGATATGAAATGCTCGTCTTTGATGATGAAATTGTGAGTTCAAATGATCAGAGAGCTATGAATCTGACACAGGAACTGAATCAGACTGATATCTTGGTTGTCGTTGCTGTTAATAACTCAGAATCTGTGAATTGGATTCAGACTAACAGCAAAAACGTCAAGAACATGATTTGCTTTGAGTCTTCTCCAAATTTGATGAACAGGCTTGGAGGGACTGATGTTGGAAGTGTGAATAAAGATAAAGAAGTAACAGAGGTTGTGAAGACAGTGGGAGATGCTTGGGAACGTCGTAACTCTGATGATATAAGGTTTTGTTTGCTCGTGATCATCAACGCTTATATAAGACCAGTTCCTGTGTTGCAAAACTTGAGGTCCAAAGGTTTTTCGACGCTTAGTTGCATGGTTAAAAACTGTGGACCTCAGATTTTGAACTGTCTTTTGGATCCGAATTGTCGAAAAGCTCTTCAGTGTTTGAACCAATGTAGTCCTGTGGATCAGGTGTGTAGCTACAGGTGCATTGCTTCTTATGAGGGTCCTTACTTTGAAGCGTTCTCTCTTTGTGTACTACAGAAGCACAATTGTTTAGAACTGGATGCAAAGATCCCTGAGAAGCCTTATGTGCCTCCCATGACGAGTTTTCGAGGGAAGGAGTTGTGTCATGATACAGCGGAAGACTTGTTTGTTGGGTGGTTAGGGGAATTGGAATGGAGCTGGCGTGTCGTGGCTGGACAAAACCCGGCTTATGATCAGTTTCCATGTCAGTACCAGCTATTCTACAGAGGGAAAGGGAAGTCGTCGTTTTGGTATGAGCCCGTGTTTCAGGTCAGGACGCTCGAAGAGAAGTTGGTGTGGAGAAGGAGAAGATACTCGGTTAAGCGAGGAAAGATCCCTGCAACGTTTCGTTTCAGTGTTTTGGACAATGGTGTGGTGTCAAATGAGTTTTGGACTATTGTGGATGTATCTGATGATCTAAGTTGGGGACTGTTCCATTACCATGGAGCAGCACGTGTAGCAGGACAGTCTTACACCGGAGCTGTGCTTGTGACACCGGATGGTTCTTACCCGGCAGAGAAGGACAAGGAGAGATTGCAGTCAGCATTGGAGAAATGTGGGATTAAGGAATGGGAACTCTTTGCTGTTGATAATTGTTCTTGTGAAAACCCGCCGCTAGGGATTCCACAGGGTTCTAGACTTCATTCGAGAATCAGTATCATAGAGGAACCAGACTCGGAAGAAAAATTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

59.29

Weight (kDa)

6.5

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3479 PF11965 98 - 199 3.4e-06 Domain of unknown function (DUF3479)
VDE PF07137 239 - 489 4.5e-25 VDE lipocalin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 270
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 4 cut(s) 5, 989, 1484, 1487
AclI AACGTT 1 cut(s) 1217
AclWI GGATC 5 cut(s) 758, 771, 822, 916, 1201
AcsI RAATTY 2 cut(s) 511, 1559
AcuI CTGAAG 1 cut(s) 770
AcvI CACGTG 1 cut(s) 1328
AfaI GTAC 3 cut(s) 187, 885, 1085
AfiI CCNNNNNNNGG 2 cut(s) 270, 1490
AflIII ACRYGT 1 cut(s) 1327
AgeI ACCGGT 2 cut(s) 66, 85
AgsI TTSAA 6 cut(s) 307, 363, 751, 796, 866, 1564
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 743, 775
AluBI AGCT 7 cut(s) 23, 377, 782, 828, 1032, 1090, 1355
AluI AGCT 7 cut(s) 23, 377, 782, 828, 1032, 1090, 1355
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 5 cut(s) 758, 771, 822, 916, 1201
AlwNI CAGNNNCTG 3 cut(s) 397, 446, 674
Aor13HI TCCGGA 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 1322
ApoI RAATTY 2 cut(s) 511, 1559
AsiGI ACCGGT 2 cut(s) 66, 85
AspS9I GGNCC 3 cut(s) 693, 737, 854
AsuC2I CCSGG 2 cut(s) 1058, 1385
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 3 cut(s) 693, 737, 854
BamHI GGATCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 1134
BauI CACGAG 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 1328
BbsI GAAGAC 3 cut(s) 495, 590, 999
BbvI GCAGC 1 cut(s) 1334
BccI CCATC 1 cut(s) 1367
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 3 cut(s) 367, 645, 1066
BcnI CCSGG 2 cut(s) 1058, 1385
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 2 cut(s) 1490, 1509
BfmI CTRYAG 3 cut(s) 829, 887, 1096
BisI GCNGC 3 cut(s) 6, 1323, 1487
BlsI GCNGC 3 cut(s) 7, 1324, 1488
Bme1390I CCNGG 3 cut(s) 36, 1058, 1385
Bme18I GGWCC 3 cut(s) 693, 737, 854
BmgT120I GGNCC 3 cut(s) 693, 737, 854
BmiI GGNNCC 3 cut(s) 765, 855, 1542
BmrFI CCNGG 3 cut(s) 36, 1058, 1385
BmsI GCATC 3 cut(s) 137, 586, 904
BpiI GAAGAC 3 cut(s) 495, 590, 999
BpmI CTGGAG 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 709
BpuMI CCSGG 2 cut(s) 1058, 1385
BsaAI YACGTR 1 cut(s) 1328
BsaJI CCNNGG 1 cut(s) 1315
BsaWI WCCGGW 6 cut(s) 66, 85, 99, 211, 1349, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 1021, 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 1490
Bse118I RCCGGY 2 cut(s) 66, 85
Bse1I ACTGG 2 cut(s) 668, 915
Bse3DI GCAATG 1 cut(s) 837
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 1315
BseGI GGATG 5 cut(s) 96, 109, 919, 1282, 1378
BseLI CCNNNNNNNGG 2 cut(s) 270, 1490
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 4 cut(s) 195, 453, 755, 918
BseNI ACTGG 2 cut(s) 668, 915
BseXI GCAGC 1 cut(s) 1334
Bsh1236I CGCG 1 cut(s) 165
BshTI ACCGGT 2 cut(s) 66, 85
BsiSI CCGG 8 cut(s) 67, 86, 100, 212, 1058, 1350, 1370, 1385
BslFI GGGAC 3 cut(s) 159, 547, 1314
BslI CCNNNNNNNGG 2 cut(s) 270, 1490
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 3 cut(s) 159, 547, 1314
Bsp1286I GDGCHC 1 cut(s) 1134
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
Bsp19I CCATGG 1 cut(s) 1315
BspACI CCGC 4 cut(s) 5, 989, 1484, 1487
BspCNI CTCAG 4 cut(s) 196, 452, 754, 919
BspEI TCCGGA 1 cut(s) 99
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 3 cut(s) 765, 855, 1542
BspPI GGATC 5 cut(s) 758, 771, 822, 916, 1201
BspQI GCTCTTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 837
BsrFI RCCGGY 2 cut(s) 66, 85
BsrI ACTGG 2 cut(s) 668, 915
BssAI RCCGGY 2 cut(s) 66, 85
BssECI CCNNGG 1 cut(s) 1315
BssMI GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
BssSI CACGAG 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 1315
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 6 cut(s) 157, 589, 734, 755, 1305, 1341
Bst6I CTCTTC 4 cut(s) 36, 176, 789, 1152
BstBAI YACGTR 1 cut(s) 1328
BstC8I GCNNGC 1 cut(s) 1034
BstDEI CTNAG 7 cut(s) 118, 204, 439, 713, 741, 927, 1292
BstDSI CCRYGG 1 cut(s) 1315
BstF5I GGATG 5 cut(s) 96, 109, 919, 1282, 1378
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 8 cut(s) 370, 648, 766, 817, 924, 1069, 1209, 1291
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 834, 940, 1331
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 3 cut(s) 34, 1056, 1383
BstSFI CTRYAG 3 cut(s) 829, 887, 1096
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 1334
BstV2I GAAGAC 3 cut(s) 495, 590, 999
BstX2I RGATCY 3 cut(s) 763, 921, 1206
BstXI CCANNNNNNTGG 1 cut(s) 1316
BstYI RGATCY 3 cut(s) 763, 921, 1206
BtgI CCRYGG 1 cut(s) 1315
BtsCI GGATG 5 cut(s) 96, 109, 919, 1282, 1378
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 5 cut(s) 153, 291, 594, 794, 1234
Cac8I GCNNGC 1 cut(s) 1034
CaiI CAGNNNCTG 3 cut(s) 397, 446, 674
CciI TCATGA 1 cut(s) 979
Cfr10I RCCGGY 2 cut(s) 66, 85
Cfr13I GGNCC 3 cut(s) 693, 737, 854
CseI GACGC 2 cut(s) 718, 1159
Csp6I GTAC 3 cut(s) 186, 884, 1084
CspAI ACCGGT 2 cut(s) 66, 85
CviAII CATG 6 cut(s) 487, 721, 949, 980, 1077, 1316
CviQI GTAC 3 cut(s) 186, 884, 1084
DdeI CTNAG 7 cut(s) 118, 204, 439, 713, 741, 927, 1292
DpnI GATC 8 cut(s) 369, 647, 765, 816, 923, 1068, 1208, 1290
DpnII GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
Eam1104I CTCTTC 4 cut(s) 36, 176, 789, 1152
EarI CTCTTC 4 cut(s) 36, 176, 789, 1152
Eco130I CCWWGG 1 cut(s) 1315
Eco24I GRGCYC 1 cut(s) 1134
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 3 cut(s) 693, 737, 854
Eco57I CTGAAG 1 cut(s) 770
Eco72I CACGTG 1 cut(s) 1328
EcoO109I RGGNCCY 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 34
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 1315
EcoT38I GRGCYC 1 cut(s) 1134
ErhI CCWWGG 1 cut(s) 1315
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 6 cut(s) 490, 724, 952, 983, 1080, 1319
FaqI GGGAC 3 cut(s) 159, 547, 1314
FatI CATG 6 cut(s) 486, 720, 948, 979, 1076, 1315
FauI CCCGC 1 cut(s) 1491
FbaI TGATCA 3 cut(s) 367, 645, 1066
Fnu4HI GCNGC 3 cut(s) 6, 1323, 1487
FokI GGATG 5 cut(s) 83, 96, 926, 1289, 1385
FriOI GRGCYC 1 cut(s) 1134
Fsp4HI GCNGC 3 cut(s) 6, 1323, 1487
FspBI CTAG 2 cut(s) 1490, 1509
GluI GCNGC 3 cut(s) 6, 1323, 1487
GsuI CTGGAG 1 cut(s) 121
HapII CCGG 8 cut(s) 67, 86, 100, 212, 1058, 1350, 1370, 1385
HgaI GACGC 2 cut(s) 718, 1159
Hin1II CATG 6 cut(s) 490, 724, 952, 983, 1080, 1319
HinfI GANTC 9 cut(s) 10, 382, 400, 443, 457, 500, 1495, 1524, 1547
HpaII CCGG 8 cut(s) 67, 86, 100, 212, 1058, 1350, 1370, 1385
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 737, 884
Hpy188III TCNNGA 8 cut(s) 100, 138, 481, 643, 980, 1147, 1509, 1521
Hpy8I GTNNAC 2 cut(s) 737, 884
Hpy99I CGWCG 4 cut(s) 236, 612, 712, 1120
HpyAV CCTTC 7 cut(s) 36, 67, 123, 314, 961, 1170, 1387
HpyCH4III ACNGT 6 cut(s) 157, 589, 734, 755, 1305, 1341
HpyCH4IV ACGT 4 cut(s) 477, 607, 1217, 1327
HpyCH4V TGCA 6 cut(s) 682, 720, 837, 917, 1214, 1411
HpyF10VI GCNNNNNNNGC 3 cut(s) 834, 940, 1331
HpyF3I CTNAG 7 cut(s) 118, 204, 439, 713, 741, 927, 1292
HpySE526I ACGT 4 cut(s) 477, 607, 1217, 1327
Hsp92II CATG 6 cut(s) 490, 724, 952, 983, 1080, 1319
Kpn2I TCCGGA 1 cut(s) 99
Ksp22I TGATCA 3 cut(s) 367, 645, 1066
Kzo9I GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 5 cut(s) 28, 291, 1029, 1319, 1352
Lsp1109I GCAGC 1 cut(s) 1334
LweI GCATC 3 cut(s) 137, 586, 904
MaeI CTAG 2 cut(s) 1490, 1509
MaeII ACGT 4 cut(s) 477, 607, 1217, 1327
MaeIII GTNAC 4 cut(s) 73, 568, 611, 1363
MalI GATC 8 cut(s) 369, 647, 765, 816, 923, 1068, 1208, 1290
MboI GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
MfeI CAATTG 1 cut(s) 898
MflI RGATCY 3 cut(s) 763, 921, 1206
MhlI GDGCHC 1 cut(s) 1134
MlyI GAGTC 2 cut(s) 509, 1541
MmeI TCCRAC 2 cut(s) 214, 523
MroI TCCGGA 1 cut(s) 99
MseI TTAA 6 cut(s) 63, 90, 432, 726, 1194, 1437
MslI CAYNNNNRTG 1 cut(s) 1314
MspA1I CMGCKG 1 cut(s) 989
MspI CCGG 8 cut(s) 67, 86, 100, 212, 1058, 1350, 1370, 1385
MspR9I CCNGG 3 cut(s) 36, 1058, 1385
MunI CAATTG 1 cut(s) 898
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 834, 940, 1331
NciI CCSGG 2 cut(s) 1058, 1385
NcoI CCATGG 1 cut(s) 1315
NdeII GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
NlaIII CATG 6 cut(s) 490, 724, 952, 983, 1080, 1319
NlaIV GGNNCC 3 cut(s) 765, 855, 1542
NmuCI GTSAC 2 cut(s) 73, 1363
PagI TCATGA 1 cut(s) 979
PciSI GCTCTTC 1 cut(s) 789
PfeI GAWTC 7 cut(s) 10, 382, 400, 443, 457, 1495, 1524
PflMI CCANNNNNTGG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 34
PinAI ACCGGT 2 cut(s) 66, 85
PkrI GCNGC 3 cut(s) 7, 1324, 1488
PleI GAGTC 2 cut(s) 508, 1541
PmaCI CACGTG 1 cut(s) 1328
PmlI CACGTG 1 cut(s) 1328
PpsI GAGTC 2 cut(s) 508, 1541
Ppu21I YACGTR 1 cut(s) 1328
PpuMI RGGWCCY 1 cut(s) 854
Psp1406I AACGTT 1 cut(s) 1217
Psp5II RGGWCCY 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 34
PspCI CACGTG 1 cut(s) 1328
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 765, 855, 1542
PspPI GGNCC 3 cut(s) 693, 737, 854
PspPPI RGGWCCY 1 cut(s) 854
PstNI CAGNNNCTG 3 cut(s) 397, 446, 674
PsuI RGATCY 3 cut(s) 763, 921, 1206
RsaI GTAC 3 cut(s) 187, 885, 1085
RsaNI GTAC 3 cut(s) 186, 884, 1084
RseI CAYNNNNRTG 1 cut(s) 1314
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 6 cut(s) 63, 90, 432, 726, 1194, 1437
SatI GCNGC 3 cut(s) 6, 1323, 1487
Sau3AI GATC 8 cut(s) 367, 645, 763, 814, 921, 1066, 1206, 1288
Sau96I GGNCC 3 cut(s) 693, 737, 854
SchI GAGTC 2 cut(s) 509, 1541
ScrFI CCNGG 3 cut(s) 36, 1058, 1385
SduI GDGCHC 1 cut(s) 1134
SfaNI GCATC 3 cut(s) 137, 586, 904
SfcI CTRYAG 3 cut(s) 829, 887, 1096
SinI GGWCC 3 cut(s) 693, 737, 854
SmiMI CAYNNNNRTG 1 cut(s) 1314
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
SsiI CCGC 4 cut(s) 5, 989, 1484, 1487
SspMI CTAG 2 cut(s) 1490, 1509
StyD4I CCNGG 3 cut(s) 34, 1056, 1383
StyI CCWWGG 1 cut(s) 1315
TaaI ACNGT 6 cut(s) 157, 589, 734, 755, 1305, 1341
TaiI ACGT 4 cut(s) 480, 610, 1220, 1330
TaqI TCGA 5 cut(s) 707, 775, 961, 1155, 1520
TatI WGTACW 1 cut(s) 883
TauI GCSGC 2 cut(s) 8, 1489
TfiI GAWTC 7 cut(s) 10, 382, 400, 443, 457, 1495, 1524
Tru1I TTAA 6 cut(s) 63, 90, 432, 726, 1194, 1437
Tru9I TTAA 6 cut(s) 63, 90, 432, 726, 1194, 1437
TscAI CASTG 5 cut(s) 160, 298, 594, 794, 1234
TseFI GTSAC 2 cut(s) 73, 1363
TseI GCWGC 1 cut(s) 1322
Tsp45I GTSAC 2 cut(s) 73, 1363
TspDTI ATGAA 9 cut(s) 85, 98, 138, 333, 342, 363, 395, 533, 1505
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 5 cut(s) 160, 298, 594, 794, 1234
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 3 cut(s) 693, 737, 854
XapI RAATTY 2 cut(s) 511, 1559
XbaI TCTAGA 1 cut(s) 1508
XspI CTAG 2 cut(s) 1490, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.