Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005484

Physical Location & Seq

Genomic Coordinates Forward (+)

20224075 .. 20225803

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTTATGAATATGTGATGGTTCAGAGGCAGAAAGTTGAGAGGAGAGGCTCTTTGGGTATTAGAGAAGAGCCAGATCTAAGAAGCATAAGAGGGAATTATGTCTTTCATTGGCACCCAGCAGAAATGCAAGGCTTGTGCAAAGACGGTTTACCCAGTAGAGGAGCTATCTGCAGATGGGATTTCCTACCACAAGTCTTGCTTCAAGTGCACTCACTGCAAAGGGACTTTGAAGAGGAATTGCATAAAGTGATTTGCTTGAGCAGTATTCCAAATTCTGTTTATCAGCTGAGCAATTATTCCTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAACTCTTCAAGGAGACCGGAAACTTCAACAAGAATTTCCAGTCACGTATTCTTACCCAGTTTGCTCAAAATCCAGGCTCGAATGTTACTGTCTGGTGTGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3479

Protein Analysis

149

Amino Acids

17.44

Weight (kDa)

7.67

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21860
fragaria_vesca	FvH4_1g22940
malus_domestica	MD10G1028700.v1.1
prunus_persica	Prupe.6G168900_v2.0.a1
pyrus_communis	pycom10g01870 pycom10g01880
rosa_chinensis	RchiOBHm_Chr2g0117401 RchiOBHm_Chr2g0117441 RchiOBHm_Chr2g0117461
rosa_laevigata	RLG00000018348
rosa_multiflora	Rmu_co8249465.1_g000001 Rmu_sc0003454.1_g000022 Rmu_sc0009364.1_g000003 Rmu_sc0009364.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126510
rosa_rugosa	Rorug02G0212700
rosa_samantha	Rh2AG267900 Rh2AG268000 Rh2BG280000 Rh2BG280200 Rh2CG272000 Rh2DG274900 Rh2DG275100 Rh2DG294100 Rh2DG294300 Rh2DG294500 Rh5AG100300
rosa_wichuraiana	Rw2G021190 Rw2G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	274, 376
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	206, 233, 352, 370
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	2 cut(s)	167, 289
AluI	AGCT	2 cut(s)	167, 289
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	209
ApaLI	GTGCAC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	274, 376
Asp700I	GAANNNNTTC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	213
BccI	CCATC	2 cut(s)	13, 171
BciT130I	CCWGG	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	172
BglII	AGATCT	1 cut(s)	76
BlpI	GCTNAGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	417
BmrI	ACTGGG	2 cut(s)	150, 394
BmuI	ACTGGG	2 cut(s)	150, 394
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	156, 382, 400
BseBI	CCWGG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	156, 382, 400
BseRI	GAGGAG	2 cut(s)	58, 177
BseSI	GKGCMC	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	156, 382, 400
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	149, 326, 433
Bst6I	CTCTTC	3 cut(s)	63, 228, 353
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstBAI	YACGTR	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	80, 290
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 217
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviJI	RGCY	7 cut(s)	51, 73, 135, 167, 289, 331, 420
CviKI_1	RGCY	7 cut(s)	51, 73, 135, 167, 289, 331, 420
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	80, 290
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	63, 228, 353
EarI	CTCTTC	3 cut(s)	63, 228, 353
Eco31I	GGTCTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	415
FaiI	YATR	5 cut(s)	9, 15, 89, 102, 246
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	239
GsaI	CCCAGC	1 cut(s)	122
HapII	CCGG	1 cut(s)	360
HpaII	CCGG	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	152, 211
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	2 cut(s)	152, 211
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	3 cut(s)	149, 326, 433
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	6 cut(s)	130, 141, 174, 211, 220, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 217
HpyF3I	CTNAG	2 cut(s)	80, 290
HpySE526I	ACGT	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	9 cut(s)	87, 132, 169, 373, 395, 402, 413, 421, 429
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	384, 427
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	80, 245, 340
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	5 cut(s)	97, 239, 274, 295, 376
MnlI	CCTC	8 cut(s)	21, 36, 41, 86, 155, 229, 313, 342
MroXI	GAANNNNTTC	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	208, 217
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	315
Ppu21I	YACGTR	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	4 cut(s)	169, 291, 316, 391
SfcI	CTRYAG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	5 cut(s)	97, 239, 274, 295, 376
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	149, 326, 433
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	97, 239, 274, 295, 376
TatI	WGTACW	1 cut(s)	321
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	2 cut(s)	24, 98
TspRI	CASTG	1 cut(s)	222
VneI	GTGCAC	1 cut(s)	209
XapI	RAATTY	2 cut(s)	274, 376
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.