Rmu_sc0009364.1_g000003

Violaxanthin

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009364.1
Physical Location & Seq
Forward (+)
11948 .. 14088
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009364.1_g000003.1.cds

Sequence Viewer

Length: 1548 bp
atggctctggaagatccccttcttcacaaacccacaacccgattttcattcaaccaccgccgtgtcgccgcctctgccgccgcttttcttcgacttcacagagaacctcattccccattctccgtcgggaaaaccactcgtcgtatcccaactaccatattggcggctaaagggggtgctgtgacggagccggtgacgcaattggagtcaaagccggtgagaatagtagccctcgtcggcaaaggtagcgtcagccctctcaaggctacaccttgggaagacgtcatgctccacaccgtgaaacgattgaaatgggtagaagaagggtatcagatgggtgtatttacgaatgatatctgccaatctaattatcaaaatgtggtgagtttccggatggaattacaacgtgcagatattttggtaattgttgctgttacaaagcaagaatccgtcgagtggattcaagctaatagtgggaatattcaaaacataatctattttgactcatctcccaatttgcaaaacaagttaggaggatcttatattcacggtgcaggcaaaggagatatctttggcaaaatgtttgacactgccgaatcaaagaaaagcagtgaatcaatggaagtggtacagactgtgtcacaggcatgggagcggcataattctgatgatataaggttttgtttgttggttataatcaatgggtatataaggccggtgccaatcctgcagaatctgagatcaaaaggtatttctactctgagctgcatggtgaagaactgtggacctcagatactgaactgcctcctggatcccaattgtaggaaagcgcttcaatgcttgaatgagtgcagtccggtggatcaaaagcacaattgtcttgggttggatgcaaagatccctgacaaaccatatgtgccacccatggttaaatttcgaggaaaggacttgtgccacgaaactgctgaagatctttttgtgggttggttgggaagtttggattggagttggcgtgtcgtggcagggcagaacccagcatatgatcaattcccttgccagtaccaactattttacaggggcaaggcaaaaggttcattttggtatgagccagtttttcaggtgaaaacgctggaggggaagttggtttggaggaggcggaagtatcgtgtcaagagaaacaaagtcccagggacattccaattcagtgtcttggacaatggggttgtttcaaatgagtcttggacaatcgtggatgtagctaatgatcttagttggggtttgttttactactccggcgctgcaagagttgctggacaatcctatactggcgctgtgcttgtcagtccagatgcggcacacccaaatgacgtgcataggagcagattagtttccgcattggagaactgtggaattaaagagtggaagctgtttacagttaacaattcttcgtgtgctaatcctccattggggattcctgagggttcacgtttgcattccgtgatagaagttaaacatcaaaaatctttgtcggatttggcagaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

57.61

Weight (kDa)

9.07

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AatII GACGTC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 718
AccBSI CCGCTC 1 cut(s) 655
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 9 cut(s) 58, 69, 78, 81, 164, 655, 1156, 1352, 1392
AclWI GGATC 6 cut(s) 8, 544, 806, 819, 870, 892
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 630, 1061
AfeI AGCGCT 1 cut(s) 831
AfiI CCNNNNNNNGG 4 cut(s) 262, 456, 822, 1466
AgsI TTSAA 7 cut(s) 52, 310, 464, 485, 836, 844, 1230
AjiI CACGTC 1 cut(s) 1369
AjnI CCWGG 2 cut(s) 807, 1186
AjuI GAANNNNNNNTTGG 2 cut(s) 985, 1017
AleI CACNNNNGTG 1 cut(s) 60
AluBI AGCT 4 cut(s) 467, 765, 1259, 1426
AluI AGCT 4 cut(s) 467, 765, 1259, 1426
AlwI GGATC 6 cut(s) 8, 544, 806, 819, 870, 892
AlwNI CAGNNNCTG 2 cut(s) 736, 796
Aor13HI TCCGGA 1 cut(s) 390
Aor51HI AGCGCT 1 cut(s) 831
AoxI GGCC 1 cut(s) 713
ApeKI GCWGC 2 cut(s) 765, 1298
ApoI RAATTY 1 cut(s) 932
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspLEI GCGC 3 cut(s) 832, 1298, 1331
AspS9I GGNCC 1 cut(s) 785
AsuHPI GGTGA 5 cut(s) 205, 229, 394, 784, 1132
AvaII GGWCC 1 cut(s) 785
AxyI CCTNAGG 1 cut(s) 1476
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 752, 1285
BccI CCATC 2 cut(s) 328, 388
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 809, 1188
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 1042
BfmI CTRYAG 1 cut(s) 728
BfoI RGCGCY 3 cut(s) 833, 1299, 1332
BfuI GTATCC 1 cut(s) 155
BglII AGATCT 1 cut(s) 970
BisI GCNGC 8 cut(s) 69, 78, 81, 165, 656, 766, 1299, 1353
BlsI GCNGC 8 cut(s) 70, 79, 82, 166, 657, 767, 1300, 1354
Bme1390I CCNGG 2 cut(s) 809, 1188
Bme18I GGWCC 1 cut(s) 785
BmgBI CACGTC 1 cut(s) 1369
BmgT120I GGNCC 1 cut(s) 785
BmiI GGNNCC 3 cut(s) 189, 720, 813
BmrFI CCNGG 2 cut(s) 809, 1188
BmsI GCATC 2 cut(s) 880, 1339
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 1151
BpuEI CTTGAG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 4 cut(s) 272, 924, 1186, 1187
BsaWI WCCGGW 2 cut(s) 390, 856
BsaXI ACNNNNNCTCC 4 cut(s) 997, 1027, 1124, 1154
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 456, 822, 1466
Bse118I RCCGGY 3 cut(s) 190, 214, 715
Bse1I ACTGG 3 cut(s) 1057, 1109, 1330
Bse21I CCTNAGG 1 cut(s) 1476
BseAI TCCGGA 1 cut(s) 390
BseBI CCWGG 2 cut(s) 809, 1188
BseDI CCNNGG 4 cut(s) 272, 924, 1186, 1187
BseGI GGATG 3 cut(s) 399, 895, 1258
BseLI CCNNNNNNNGG 4 cut(s) 262, 456, 822, 1466
BseMII CTCAG 4 cut(s) 728, 752, 803, 1467
BseNI ACTGG 3 cut(s) 1057, 1109, 1330
BseRI GAGGAG 1 cut(s) 1165
BseXI GCAGC 2 cut(s) 752, 1285
BseYI CCCAGC 1 cut(s) 1033
BsgI GTGCAG 3 cut(s) 429, 573, 871
BshFI GGCC 1 cut(s) 715
BshNI GGYRCC 1 cut(s) 718
BsiSI CCGG 6 cut(s) 191, 215, 391, 716, 857, 1293
BslFI GGGAC 2 cut(s) 1169, 1204
BslI CCNNNNNNNGG 4 cut(s) 262, 456, 822, 1466
BsmFI GGGAC 2 cut(s) 1169, 1204
BsmI GAATGC 1 cut(s) 1492
BsnI GGCC 1 cut(s) 715
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 9 cut(s) 58, 69, 78, 81, 164, 655, 1156, 1352, 1392
BspANI GGCC 1 cut(s) 715
BspCNI CTCAG 4 cut(s) 729, 753, 802, 1468
BspEI TCCGGA 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 189, 720, 813
BspMAI CTGCAG 1 cut(s) 732
BspPI GGATC 6 cut(s) 8, 544, 806, 819, 870, 892
BspT107I GGYRCC 1 cut(s) 718
BsrBI CCGCTC 1 cut(s) 655
BsrFI RCCGGY 3 cut(s) 190, 214, 715
BsrI ACTGG 3 cut(s) 1057, 1109, 1330
BssAI RCCGGY 3 cut(s) 190, 214, 715
BssECI CCNNGG 4 cut(s) 272, 924, 1186, 1187
BssMI GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 272, 924
Bst2UI CCWGG 2 cut(s) 809, 1188
Bst4CI ACNGT 6 cut(s) 298, 551, 637, 782, 1406, 1435
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 1307
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 5 cut(s) 737, 761, 789, 1268, 1476
BstDSI CCRYGG 1 cut(s) 924
BstF5I GGATG 3 cut(s) 399, 895, 1258
BstH2I RGCGCY 3 cut(s) 833, 1299, 1332
BstHHI GCGC 3 cut(s) 832, 1298, 1331
BstKTI GATC 9 cut(s) 16, 539, 743, 814, 865, 900, 973, 1045, 1267
BstMBI GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
BstMWI GCNNNNNNNGC 6 cut(s) 74, 77, 196, 246, 727, 1307
BstNI CCWGG 2 cut(s) 809, 1188
BstSCI CCNGG 2 cut(s) 807, 1186
BstSFI CTRYAG 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 752, 1285
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 5 cut(s) 13, 536, 811, 897, 970
BstYI RGATCY 5 cut(s) 13, 536, 811, 897, 970
Bsu36I CCTNAGG 1 cut(s) 1476
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 715
BtgI CCRYGG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 1369
BtsCI GGATG 3 cut(s) 399, 895, 1258
BtsI GCAGTG 2 cut(s) 588, 616
BtsIMutI CAGTG 3 cut(s) 588, 616, 1210
Cac8I GCNNGC 1 cut(s) 556
CaiI CAGNNNCTG 2 cut(s) 736, 796
CfoI GCGC 3 cut(s) 832, 1298, 1331
Cfr10I RCCGGY 3 cut(s) 190, 214, 715
Cfr13I GGNCC 1 cut(s) 785
CseI GACGC 2 cut(s) 205, 238
Csp6I GTAC 2 cut(s) 629, 1060
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 4 cut(s) 286, 648, 769, 925
CviQI GTAC 2 cut(s) 629, 1060
DdeI CTNAG 5 cut(s) 737, 761, 789, 1268, 1476
DpnI GATC 9 cut(s) 15, 538, 742, 813, 864, 899, 972, 1044, 1266
DpnII GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
DraIII CACNNNGTG 1 cut(s) 298
EciI GGCGGA 1 cut(s) 1171
Eco130I CCWWGG 2 cut(s) 272, 924
Eco32I GATATC 2 cut(s) 355, 568
Eco47I GGWCC 1 cut(s) 785
Eco47III AGCGCT 1 cut(s) 831
Eco57I CTGAAG 1 cut(s) 987
Eco81I CCTNAGG 1 cut(s) 1476
EcoRII CCWGG 2 cut(s) 807, 1186
EcoRV GATATC 2 cut(s) 355, 568
EcoT14I CCWWGG 2 cut(s) 272, 924
ErhI CCWWGG 2 cut(s) 272, 924
FaeI CATG 4 cut(s) 289, 651, 772, 928
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 1169, 1204
FatI CATG 4 cut(s) 285, 647, 768, 924
FauNDI CATATG 2 cut(s) 913, 1039
FbaI TGATCA 1 cut(s) 1042
Fnu4HI GCNGC 8 cut(s) 69, 78, 81, 165, 656, 766, 1299, 1353
FokI GGATG 3 cut(s) 406, 902, 1265
Fsp4HI GCNGC 8 cut(s) 69, 78, 81, 165, 656, 766, 1299, 1353
GlaI GCGC 3 cut(s) 831, 1297, 1330
GluI GCNGC 8 cut(s) 69, 78, 81, 165, 656, 766, 1299, 1353
GsaI CCCAGC 1 cut(s) 1037
GsuI CTGGAG 1 cut(s) 1151
HaeII RGCGCY 3 cut(s) 833, 1299, 1332
HaeIII GGCC 1 cut(s) 715
HapII CCGG 6 cut(s) 191, 215, 391, 716, 857, 1293
HgaI GACGC 2 cut(s) 205, 238
HhaI GCGC 3 cut(s) 832, 1298, 1331
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 4 cut(s) 289, 651, 772, 928
Hin6I GCGC 3 cut(s) 830, 1296, 1329
HinP1I GCGC 3 cut(s) 830, 1296, 1329
HincII GTYRAC 1 cut(s) 1438
HindII GTYRAC 1 cut(s) 1438
HinfI GANTC 9 cut(s) 206, 446, 460, 503, 596, 614, 733, 1235, 1471
HpaI GTTAAC 1 cut(s) 1438
HpaII CCGG 6 cut(s) 191, 215, 391, 716, 857, 1293
HphI GGTGA 5 cut(s) 205, 229, 394, 784, 1132
Hpy166II GTNNAC 4 cut(s) 785, 1431, 1438, 1484
Hpy188I TCNGA 6 cut(s) 333, 667, 738, 762, 792, 1531
Hpy188III TCNNGA 6 cut(s) 8, 127, 391, 1171, 1346, 1475
Hpy8I GTNNAC 4 cut(s) 785, 1431, 1438, 1484
Hpy99I CGWCG 4 cut(s) 128, 144, 239, 455
HpyAV CCTTC 2 cut(s) 29, 317
HpyCH4III ACNGT 6 cut(s) 298, 551, 637, 782, 1406, 1435
HpyCH4IV ACGT 4 cut(s) 282, 406, 1368, 1486
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 77, 196, 246, 727, 1307
HpyF3I CTNAG 5 cut(s) 737, 761, 789, 1268, 1476
HpySE526I ACGT 4 cut(s) 282, 406, 1368, 1486
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 4 cut(s) 289, 651, 772, 928
HspAI GCGC 3 cut(s) 830, 1296, 1329
Kpn2I TCCGGA 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 1042
KspAI GTTAAC 1 cut(s) 1438
Kzo9I GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
LmnI GCTCC 4 cut(s) 187, 294, 652, 1377
Lsp1109I GCAGC 2 cut(s) 752, 1285
LweI GCATC 2 cut(s) 880, 1339
MaeII ACGT 4 cut(s) 282, 406, 1368, 1486
MaeIII GTNAC 4 cut(s) 181, 193, 433, 639
MalI GATC 9 cut(s) 15, 538, 742, 813, 864, 899, 972, 1044, 1266
MbiI CCGCTC 1 cut(s) 655
MboI GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
MboII GAAGA 8 cut(s) 14, 23, 80, 290, 332, 787, 980, 1437
MfeI CAATTG 3 cut(s) 200, 817, 874
MflI RGATCY 5 cut(s) 13, 536, 811, 897, 970
MlyI GAGTC 3 cut(s) 215, 497, 1244
MmeI TCCRAC 2 cut(s) 867, 1509
MroI TCCGGA 1 cut(s) 390
MseI TTAA 4 cut(s) 930, 1413, 1437, 1509
MslI CAYNNNNRTG 3 cut(s) 60, 646, 1362
MspI CCGG 6 cut(s) 191, 215, 391, 716, 857, 1293
MspR9I CCNGG 2 cut(s) 809, 1188
MunI CAATTG 3 cut(s) 200, 817, 874
Mva1269I GAATGC 1 cut(s) 1492
MvaI CCWGG 2 cut(s) 809, 1188
MwoI GCNNNNNNNGC 6 cut(s) 74, 77, 196, 246, 727, 1307
NcoI CCATGG 1 cut(s) 924
NdeI CATATG 2 cut(s) 913, 1039
NdeII GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
NlaIII CATG 4 cut(s) 289, 651, 772, 928
NlaIV GGNNCC 3 cut(s) 189, 720, 813
NmuCI GTSAC 3 cut(s) 181, 193, 639
OliI CACNNNNGTG 1 cut(s) 60
PasI CCCWGGG 1 cut(s) 1187
PctI GAATGC 1 cut(s) 1492
PfeI GAWTC 6 cut(s) 446, 460, 596, 614, 733, 1471
PflFI GACNNNGTC 1 cut(s) 637
PfoI TCCNGGA 1 cut(s) 807
PkrI GCNGC 8 cut(s) 70, 79, 82, 166, 657, 767, 1300, 1354
PleI GAGTC 3 cut(s) 214, 497, 1243
PpsI GAGTC 3 cut(s) 214, 497, 1243
PsiI TTATAA 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 807, 1186
PspFI CCCAGC 1 cut(s) 1033
PspGI CCWGG 2 cut(s) 807, 1186
PspN4I GGNNCC 3 cut(s) 189, 720, 813
PspPI GGNCC 1 cut(s) 785
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 2 cut(s) 736, 796
PsuI RGATCY 5 cut(s) 13, 536, 811, 897, 970
PsyI GACNNNGTC 1 cut(s) 637
RsaI GTAC 2 cut(s) 630, 1061
RsaNI GTAC 2 cut(s) 629, 1060
RseI CAYNNNNRTG 3 cut(s) 60, 646, 1362
SaqAI TTAA 4 cut(s) 930, 1413, 1437, 1509
SatI GCNGC 8 cut(s) 69, 78, 81, 165, 656, 766, 1299, 1353
Sau3AI GATC 9 cut(s) 13, 536, 740, 811, 862, 897, 970, 1042, 1264
Sau96I GGNCC 1 cut(s) 785
SchI GAGTC 3 cut(s) 215, 497, 1244
ScrFI CCNGG 2 cut(s) 809, 1188
SfaNI GCATC 2 cut(s) 880, 1339
SfcI CTRYAG 1 cut(s) 728
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 3 cut(s) 60, 646, 1362
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SsiI CCGC 9 cut(s) 58, 69, 78, 81, 164, 655, 1156, 1352, 1392
SspI AATATT 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 807, 1186
StyI CCWWGG 2 cut(s) 272, 924
TaaI ACNGT 6 cut(s) 298, 551, 637, 782, 1406, 1435
TaiI ACGT 4 cut(s) 285, 409, 1371, 1489
TaqI TCGA 3 cut(s) 91, 453, 937
TauI GCSGC 6 cut(s) 71, 80, 83, 167, 658, 1355
TfiI GAWTC 6 cut(s) 446, 460, 596, 614, 733, 1471
Tru1I TTAA 4 cut(s) 930, 1413, 1437, 1509
Tru9I TTAA 4 cut(s) 930, 1413, 1437, 1509
TscAI CASTG 3 cut(s) 595, 616, 1210
TseFI GTSAC 3 cut(s) 181, 193, 639
TseI GCWGC 2 cut(s) 765, 1298
Tsp45I GTSAC 3 cut(s) 181, 193, 639
TspDTI ATGAA 2 cut(s) 36, 1083
TspGWI ACGGA 4 cut(s) 112, 200, 439, 1486
TspRI CASTG 3 cut(s) 595, 616, 1210
Tth111I GACNNNGTC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 785
XapI RAATTY 1 cut(s) 932
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.