Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009364.1

Orthogroup ID

OG0005484

Physical Location & Seq

Genomic Coordinates Forward (+)

26040 .. 28074

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009364.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

atgatgatcaaagagtcatatggtgagcagagagcaggcacgtcactcatggctctggaagctccccttcttcacaaacccacaacccgattttcattcaaccaccgccgtgtcgccgcctctgccgccgcttttcttcgacttcacagaggaggacctcattccccattctccgtcgtgaaaaccactcgtcgtgtcccaactaccatattggcggctaaggcgggtgctgtgacggagccggtgacgcaattggagtcaaagccggtgagaatagtagccctcgtcggcaaaggtagcgtcagccctctcaaggctacaccttgggaggacgtcatgctccacaccgtgaaacgactgaaatgggtagatgaagggtttgagatggttgtatttacggatgatatcttccaatctaatgatcaaaatgtggcgagtttccgggtggaattacaacgtgctgatattttggtaatcgttgctgttacgaatcaagaatccgtcaagtggattcaagctaatagtgggaatattcaaaacataatctgttttgactcatctcccaatttgcaaaacaagttaggaggatcttatattcagggtgcaggcaaaggagatatctttggcaaaatgtttgacactgccgaatcaaagaaaagcagtgaatcaatggaagtggtacagactgtgtcacaggcgtgggagcggcataactctgatgatataaggttttgtttgttggttataatcaatgggtatataagaccggtgccaatcctgcagaatctgagatcgaaaggtctttctactctgagctgcgtggtgaagaactgtggacctcagatactgaactgcctcctggatcccaattgtaggaaagctcttcaatgcttgaatgagtgcagtccggtggaacaagtgtgtaactatcggtgcattgcttcgtatgagagtccagttctagaagctttttctctgtgtgcgttgcagaagcacaattgtcttgggttggatgcaaagatccctgacaaaccatatgtgccccccatggttaaatttcgaggaaaggacttgtgccacgaaactgctgaagatctttttgttggttggttgggaagtttggattggagttggcgtgtcgtggcaggacagaacccagcatttgatcaattcccttgcccgcaccaactattttacaggggcaaggcaaaaggttcattttggtatgagccggtttttcaggtgaaaacgctggaggggaagatggtttggaggaggcggaagtatcgtgtcaagagaaacaaagtcccagggacattccaattcagtgtcttagacaatggggttgtttcaaatgagtcttggacaatcgtggatgtagctgatgatcttagttggggtttgttttactactctggcgctgcaagagttgctggacaatcctatactggcgctgtgcttgtcagtccagatggggcatacccaaatgatgtgcataggagcagattagtttccgctttggataactgtggaattaaagagtgggagctgttaacagttaacaattcttcgtgtgctaatcctccattggggattcctgagggttcacgtttgcattccgtgatagaagttaaagatcagaaatctttgtcggatttggcagaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3479

Protein Analysis

556

Amino Acids

61.77

Weight (kDa)

8.66

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21860
fragaria_vesca	FvH4_1g22940
malus_domestica	MD10G1028700.v1.1
prunus_persica	Prupe.6G168900_v2.0.a1
pyrus_communis	pycom10g01870 pycom10g01880
rosa_chinensis	RchiOBHm_Chr2g0117401 RchiOBHm_Chr2g0117441 RchiOBHm_Chr2g0117461
rosa_laevigata	RLG00000018348
rosa_multiflora	Rmu_co8249465.1_g000001 Rmu_sc0003454.1_g000022 Rmu_sc0009364.1_g000003 Rmu_sc0009364.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126510
rosa_rugosa	Rorug02G0212700
rosa_samantha	Rh2AG267900 Rh2AG268000 Rh2BG280000 Rh2BG280200 Rh2CG272000 Rh2DG274900 Rh2DG275100 Rh2DG294100 Rh2DG294300 Rh2DG294500 Rh5AG100300
rosa_wichuraiana	Rw2G021190 Rw2G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
AatII	GACGTC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	706
AclWI	GGATC	4 cut(s)	595, 857, 870, 1015
AcsI	RAATTY	1 cut(s)	1055
AcuI	CTGAAG	1 cut(s)	1110
AcyI	GRCGYC	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	681
AfiI	CCNNNNNNNGG	4 cut(s)	313, 507, 873, 1589
AgeI	ACCGGT	1 cut(s)	766
AgsI	TTSAA	6 cut(s)	100, 515, 536, 887, 895, 1353
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	2 cut(s)	858, 1309
AjuI	GAANNNNNNNTTGG	2 cut(s)	1108, 1140
AleI	CACNNNNGTG	2 cut(s)	108, 697
AluBI	AGCT	7 cut(s)	62, 518, 816, 881, 968, 1382, 1549
AluI	AGCT	7 cut(s)	62, 518, 816, 881, 968, 1382, 1549
AlwI	GGATC	4 cut(s)	595, 857, 870, 1015
AlwNI	CAGNNNCTG	2 cut(s)	787, 847
ApeKI	GCWGC	2 cut(s)	816, 1421
ApoI	RAATTY	1 cut(s)	1055
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
AsiGI	ACCGGT	1 cut(s)	766
AspLEI	GCGC	2 cut(s)	1421, 1454
AspS9I	GGNCC	2 cut(s)	155, 836
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	5 cut(s)	35, 256, 280, 835, 1255
AvaII	GGWCC	2 cut(s)	155, 836
AxyI	CCTNAGG	1 cut(s)	1599
BaeGI	GKGCMC	1 cut(s)	1044
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	769
BbvI	GCAGC	2 cut(s)	803, 1408
BccI	CCATC	3 cut(s)	379, 1258, 1466
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	860, 1311
BclI	TGATCA	3 cut(s)	6, 421, 1165
BcnI	CCSGG	1 cut(s)	443
BfaI	CTAG	1 cut(s)	962
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	2 cut(s)	1422, 1455
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	7 cut(s)	117, 126, 129, 216, 707, 817, 1422
BlsI	GCNGC	7 cut(s)	118, 127, 130, 217, 708, 818, 1423
Bme1390I	CCNGG	3 cut(s)	443, 860, 1311
Bme18I	GGWCC	2 cut(s)	155, 836
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	155, 836
BmiI	GGNNCC	3 cut(s)	240, 771, 864
BmrFI	CCNGG	3 cut(s)	443, 860, 1311
BmsI	GCATC	1 cut(s)	1003
BpmI	CTGGAG	1 cut(s)	1274
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	4 cut(s)	323, 1047, 1309, 1310
BsaWI	WCCGGW	2 cut(s)	766, 907
BsaXI	ACNNNNNCTCC	2 cut(s)	1120, 1150
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 507, 873, 1589
Bse118I	RCCGGY	4 cut(s)	241, 265, 766, 1231
Bse1I	ACTGG	2 cut(s)	956, 1453
Bse21I	CCTNAGG	1 cut(s)	1599
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	860, 1311
BseDI	CCNNGG	4 cut(s)	323, 1047, 1309, 1310
BseGI	GGATG	3 cut(s)	406, 1018, 1381
BseLI	CCNNNNNNNGG	4 cut(s)	313, 507, 873, 1589
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	4 cut(s)	779, 803, 854, 1590
BseNI	ACTGG	2 cut(s)	956, 1453
BseRI	GAGGAG	2 cut(s)	165, 1288
BseSI	GKGCMC	1 cut(s)	1044
BseXI	GCAGC	2 cut(s)	803, 1408
BseYI	CCCAGC	1 cut(s)	1156
BsgI	GTGCAG	2 cut(s)	624, 922
BshNI	GGYRCC	1 cut(s)	769
BshTI	ACCGGT	1 cut(s)	766
BsiSI	CCGG	6 cut(s)	242, 266, 442, 767, 908, 1232
BslFI	GGGAC	3 cut(s)	182, 1292, 1327
BslI	CCNNNNNNNGG	4 cut(s)	313, 507, 873, 1589
BsmFI	GGGAC	3 cut(s)	182, 1292, 1327
BsmI	GAATGC	1 cut(s)	1615
Bsp1286I	GDGCHC	1 cut(s)	1044
Bsp19I	CCATGG	1 cut(s)	1047
BspCNI	CTCAG	4 cut(s)	780, 804, 853, 1591
BspLI	GGNNCC	3 cut(s)	240, 771, 864
BspMAI	CTGCAG	1 cut(s)	783
BspPI	GGATC	4 cut(s)	595, 857, 870, 1015
BspQI	GCTCTTC	1 cut(s)	888
BspT107I	GGYRCC	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	936
BsrFI	RCCGGY	4 cut(s)	241, 265, 766, 1231
BsrI	ACTGG	2 cut(s)	956, 1453
BssAI	RCCGGY	4 cut(s)	241, 265, 766, 1231
BssECI	CCNNGG	4 cut(s)	323, 1047, 1309, 1310
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	323, 1047
Bst2UI	CCWGG	2 cut(s)	860, 1311
Bst4CI	ACNGT	5 cut(s)	349, 688, 833, 1529, 1558
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	1430
BstC8I	GCNNGC	3 cut(s)	37, 607, 1181
BstDEI	CTNAG	7 cut(s)	219, 788, 812, 840, 1333, 1391, 1599
BstDSI	CCRYGG	1 cut(s)	1047
BstF5I	GGATG	3 cut(s)	406, 1018, 1381
BstH2I	RGCGCY	2 cut(s)	1422, 1455
BstHHI	GCGC	2 cut(s)	1421, 1454
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 122, 125, 221, 247, 297, 778, 1430
BstNI	CCWGG	2 cut(s)	860, 1311
BstSCI	CCNGG	3 cut(s)	441, 858, 1309
BstSFI	CTRYAG	1 cut(s)	779
BstSLI	GKGCMC	1 cut(s)	1044
BstV1I	GCAGC	2 cut(s)	803, 1408
BstX2I	RGATCY	4 cut(s)	587, 862, 1020, 1093
BstYI	RGATCY	4 cut(s)	587, 862, 1020, 1093
Bsu36I	CCTNAGG	1 cut(s)	1599
BtgI	CCRYGG	1 cut(s)	1047
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	406, 1018, 1381
BtsI	GCAGTG	2 cut(s)	639, 667
BtsIMutI	CAGTG	3 cut(s)	639, 667, 1333
Cac8I	GCNNGC	3 cut(s)	37, 607, 1181
CaiI	CAGNNNCTG	2 cut(s)	787, 847
CfoI	GCGC	2 cut(s)	1421, 1454
Cfr10I	RCCGGY	4 cut(s)	241, 265, 766, 1231
Cfr13I	GGNCC	2 cut(s)	155, 836
CseI	GACGC	2 cut(s)	256, 289
Csp6I	GTAC	1 cut(s)	680
CspAI	ACCGGT	1 cut(s)	766
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	3 cut(s)	49, 337, 1048
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	7 cut(s)	219, 788, 812, 840, 1333, 1391, 1599
DraIII	CACNNNGTG	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
EciI	GGCGGA	1 cut(s)	1294
Eco130I	CCWWGG	2 cut(s)	323, 1047
Eco32I	GATATC	2 cut(s)	406, 619
Eco47I	GGWCC	2 cut(s)	155, 836
Eco57I	CTGAAG	1 cut(s)	1110
Eco81I	CCTNAGG	1 cut(s)	1599
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	858, 1309
EcoRV	GATATC	2 cut(s)	406, 619
EcoT14I	CCWWGG	2 cut(s)	323, 1047
ErhI	CCWWGG	2 cut(s)	323, 1047
FaeI	CATG	3 cut(s)	52, 340, 1051
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	3 cut(s)	182, 1292, 1327
FatI	CATG	3 cut(s)	48, 336, 1047
FauI	CCCGC	2 cut(s)	217, 1188
FauNDI	CATATG	2 cut(s)	19, 1036
FbaI	TGATCA	3 cut(s)	6, 421, 1165
Fnu4HI	GCNGC	7 cut(s)	117, 126, 129, 216, 707, 817, 1422
FokI	GGATG	3 cut(s)	413, 1025, 1388
Fsp4HI	GCNGC	7 cut(s)	117, 126, 129, 216, 707, 817, 1422
FspBI	CTAG	1 cut(s)	962
GlaI	GCGC	2 cut(s)	1420, 1453
GluI	GCNGC	7 cut(s)	117, 126, 129, 216, 707, 817, 1422
GsaI	CCCAGC	1 cut(s)	1160
GsuI	CTGGAG	1 cut(s)	1274
HaeII	RGCGCY	2 cut(s)	1422, 1455
HapII	CCGG	6 cut(s)	242, 266, 442, 767, 908, 1232
HgaI	GACGC	2 cut(s)	256, 289
HhaI	GCGC	2 cut(s)	1421, 1454
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	52, 340, 1051
Hin6I	GCGC	2 cut(s)	1419, 1452
HinP1I	GCGC	2 cut(s)	1419, 1452
HincII	GTYRAC	2 cut(s)	1554, 1561
HindII	GTYRAC	2 cut(s)	1554, 1561
HindIII	AAGCTT	1 cut(s)	966
HpaI	GTTAAC	2 cut(s)	1554, 1561
HpaII	CCGG	6 cut(s)	242, 266, 442, 767, 908, 1232
HphI	GGTGA	5 cut(s)	35, 256, 280, 835, 1255
Hpy166II	GTNNAC	4 cut(s)	836, 1554, 1561, 1607
Hpy188I	TCNGA	6 cut(s)	718, 789, 813, 843, 1641, 1654
Hpy188III	TCNNGA	7 cut(s)	56, 178, 494, 962, 1294, 1469, 1598
Hpy8I	GTNNAC	4 cut(s)	836, 1554, 1561, 1607
Hpy99I	CGWCG	3 cut(s)	179, 195, 290
HpyAV	CCTTC	2 cut(s)	77, 368
HpyCH4III	ACNGT	5 cut(s)	349, 688, 833, 1529, 1558
HpyCH4IV	ACGT	4 cut(s)	41, 333, 457, 1609
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 122, 125, 221, 247, 297, 778, 1430
HpyF3I	CTNAG	7 cut(s)	219, 788, 812, 840, 1333, 1391, 1599
HpySE526I	ACGT	4 cut(s)	41, 333, 457, 1609
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	52, 340, 1051
HspAI	GCGC	2 cut(s)	1419, 1452
Ksp22I	TGATCA	3 cut(s)	6, 421, 1165
KspAI	GTTAAC	2 cut(s)	1554, 1561
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	6 cut(s)	67, 238, 345, 703, 1500, 1546
Lsp1109I	GCAGC	2 cut(s)	803, 1408
LweI	GCATC	1 cut(s)	1003
MaeI	CTAG	1 cut(s)	962
MaeII	ACGT	4 cut(s)	41, 333, 457, 1609
MaeIII	GTNAC	6 cut(s)	42, 232, 244, 484, 690, 923
MbiI	CCGCTC	1 cut(s)	706
MboII	GAAGA	8 cut(s)	62, 128, 400, 838, 875, 1103, 1273, 1560
MfeI	CAATTG	3 cut(s)	251, 868, 997
MflI	RGATCY	4 cut(s)	587, 862, 1020, 1093
MhlI	GDGCHC	1 cut(s)	1044
MlyI	GAGTC	5 cut(s)	23, 266, 548, 961, 1367
MmeI	TCCRAC	2 cut(s)	990, 1632
MseI	TTAA	5 cut(s)	1053, 1536, 1553, 1560, 1632
MslI	CAYNNNNRTG	2 cut(s)	108, 697
MspI	CCGG	6 cut(s)	242, 266, 442, 767, 908, 1232
MspR9I	CCNGG	3 cut(s)	443, 860, 1311
MunI	CAATTG	3 cut(s)	251, 868, 997
Mva1269I	GAATGC	1 cut(s)	1615
MvaI	CCWGG	2 cut(s)	860, 1311
MwoI	GCNNNNNNNGC	8 cut(s)	59, 122, 125, 221, 247, 297, 778, 1430
NciI	CCSGG	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	1047
NdeI	CATATG	2 cut(s)	19, 1036
NlaIII	CATG	3 cut(s)	52, 340, 1051
NlaIV	GGNNCC	3 cut(s)	240, 771, 864
NmuCI	GTSAC	4 cut(s)	42, 232, 244, 690
OliI	CACNNNNGTG	2 cut(s)	108, 697
PasI	CCCWGGG	1 cut(s)	1310
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	1 cut(s)	1615
PfeI	GAWTC	7 cut(s)	490, 497, 511, 647, 665, 784, 1594
PflFI	GACNNNGTC	1 cut(s)	688
PfoI	TCCNGGA	1 cut(s)	858
PinAI	ACCGGT	1 cut(s)	766
PkrI	GCNGC	7 cut(s)	118, 127, 130, 217, 708, 818, 1423
PleI	GAGTC	5 cut(s)	22, 265, 548, 960, 1366
PpsI	GAGTC	5 cut(s)	22, 265, 548, 960, 1366
PpuMI	RGGWCCY	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	858, 1309
PspFI	CCCAGC	1 cut(s)	1156
PspGI	CCWGG	2 cut(s)	858, 1309
PspN4I	GGNNCC	3 cut(s)	240, 771, 864
PspPI	GGNCC	2 cut(s)	155, 836
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	783
PstNI	CAGNNNCTG	2 cut(s)	787, 847
PsuI	RGATCY	4 cut(s)	587, 862, 1020, 1093
PsyI	GACNNNGTC	1 cut(s)	688
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
RseI	CAYNNNNRTG	2 cut(s)	108, 697
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	5 cut(s)	1053, 1536, 1553, 1560, 1632
SatI	GCNGC	7 cut(s)	117, 126, 129, 216, 707, 817, 1422
Sau96I	GGNCC	2 cut(s)	155, 836
SchI	GAGTC	5 cut(s)	23, 266, 548, 961, 1367
ScrFI	CCNGG	3 cut(s)	443, 860, 1311
SduI	GDGCHC	1 cut(s)	1044
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	1 cut(s)	779
SinI	GGWCC	2 cut(s)	155, 836
SmiMI	CAYNNNNRTG	2 cut(s)	108, 697
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	1 cut(s)	962
StyD4I	CCNGG	3 cut(s)	441, 858, 1309
StyI	CCWWGG	2 cut(s)	323, 1047
TaaI	ACNGT	5 cut(s)	349, 688, 833, 1529, 1558
TaiI	ACGT	4 cut(s)	44, 336, 460, 1612
TaqI	TCGA	3 cut(s)	139, 794, 1060
TauI	GCSGC	5 cut(s)	119, 128, 131, 218, 709
TfiI	GAWTC	7 cut(s)	490, 497, 511, 647, 665, 784, 1594
Tru1I	TTAA	5 cut(s)	1053, 1536, 1553, 1560, 1632
Tru9I	TTAA	5 cut(s)	1053, 1536, 1553, 1560, 1632
TscAI	CASTG	3 cut(s)	646, 667, 1333
TseFI	GTSAC	4 cut(s)	42, 232, 244, 690
TseI	GCWGC	2 cut(s)	816, 1421
Tsp45I	GTSAC	4 cut(s)	42, 232, 244, 690
TspDTI	ATGAA	3 cut(s)	84, 387, 1206
TspGWI	ACGGA	5 cut(s)	163, 251, 413, 490, 1609
TspRI	CASTG	3 cut(s)	646, 667, 1333
Tth111I	GACNNNGTC	1 cut(s)	688
VpaK11BI	GGWCC	2 cut(s)	155, 836
XapI	RAATTY	1 cut(s)	1055
XbaI	TCTAGA	1 cut(s)	961
XspI	CTAG	1 cut(s)	962
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.