Rmu_sc0003454.1_g000022

Violaxanthin

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003454.1
Physical Location & Seq
Reverse (-)
95904 .. 99061
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003454.1_g000022.1.cds

Sequence Viewer

Length: 1740 bp
atggctctggaagctccccttcttcacaaacccacaacccgattttcattcaaccaccgccgtgtcgccgcctctgccgccgcttttcttcgacttcacagaggaggacctcattccccattctccgtcgggaaaaccactcgtcgtatcccaaccaccatattggcggctaaggcgggtgctgtgacggagccggtgacgcaattggagtcaaagccggtgagaatagtagccctcgtcggcaaaggtagcgtcagccctctcaaggctacaccttgggaagacgtcatgcttcacaccgtgaaacgactgaaatgggttgacgaagtgtatgagatggttgtatttacagatgatatatgccagtctaatgatcaaaatgtggtgagtttccggatggaattacaacgtgcagatattttggtaattgttgctgttacaaagcaagaatccgtcgagtggattcaagctaatagtgggaatattcaaaacataatctgttttgactcatctcccaacttgcaaaacaagttgggaggatcttatattcacagtgaagccaaaggagatatctttggcaaaatgtttgacactgctgaatcaaagaaaagcagtgaatcaatggaagtggtacagactgtgtcacaggcgtgggagcggcataattctgatgatataaggttttgcttgttggttataatcaatgggtatataagaccggtgccaatcctgcagaatctaagatcgaaaggtctttctactctgagctgcatggtgaagaactgtggacctcagatactgaactgcctcctggatcccaattgtaggaaagctcttcaatgcttgaatgagtgcagtccggtggatcaagtgtgtaactatcggtgcattgcttcgtatgagagtccagttctagaagctttttctctgtgtgcgttgcagaagcacaattgtcttgggttggatgcaaagatccctgacaaaccatatgtgccacccatggttaaatttcgaggaaaggacttgtgccacgaaactgctgaagatctttttgttggttggttgggaagtttggattggagttggcgtgtcgtggcagggcagaacccagcatatgatcaattcccttgccagtaccaactattttacaggggcaaggcaaaaggttcattttggtatgagccggtttttcaggtgaaaacgctggaggggaaggtggtttggaggaggcggaagtatcgtgtcaagagaaacaaagtcccagggacattccaattcagtgtcttggacaatggggttgtttcaaatgagtcttggacaatcgtggatgtagctgatgatcttagttggggtttgttttactactctggcgctgcaagagttgctggacaatcctatactggcgctgtgcttgtcagtccagatggggcatacccaaatgatgtgcataggagcagattagtttccgctttggagaactgtggaattaaagagtgggagctgtttacagttaacaattcttcgtgtgctaatcctccattgcggattcctgagggttcacgtttgcattccgtgatagaagttaaagatcagaaatctttgtcagatttggcagaggctggtcttataagcgcttatatcataaaaacactctactttggaaggcattctacagatcgtgaagttgctctcatgatgcttctggcttatttgtcatacatgttggctgaggtaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

64.77

Weight (kDa)

8.53

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 698, 1628
AatII GACGTC 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 1732
AccB1I GGYRCC 2 cut(s) 721, 1732
AccBSI CCGCTC 1 cut(s) 658
AccIII TCCGGA 1 cut(s) 393
AclWI GGATC 5 cut(s) 547, 809, 822, 873, 967
AcsI RAATTY 1 cut(s) 1007
AcuI CTGAAG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 3 cut(s) 633, 1136, 1734
AfeI AGCGCT 1 cut(s) 1633
AfiI CCNNNNNNNGG 3 cut(s) 265, 459, 825
AflIII ACRYGT 1 cut(s) 1719
AgeI ACCGGT 1 cut(s) 718
AgsI TTSAA 6 cut(s) 52, 467, 488, 839, 847, 1305
AjnI CCWGG 2 cut(s) 810, 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 1060, 1092
AleI CACNNNNGTG 2 cut(s) 60, 649
AluBI AGCT 7 cut(s) 14, 470, 768, 833, 920, 1334, 1501
AluI AGCT 7 cut(s) 14, 470, 768, 833, 920, 1334, 1501
AlwI GGATC 5 cut(s) 547, 809, 822, 873, 967
AlwNI CAGNNNCTG 2 cut(s) 799, 1619
Aor13HI TCCGGA 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 1633
ApeKI GCWGC 2 cut(s) 768, 1373
ApoI RAATTY 1 cut(s) 1007
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AsiGI ACCGGT 1 cut(s) 718
Asp700I GAANNNNTTC 1 cut(s) 1666
Asp718I GGTACC 1 cut(s) 1732
AspLEI GCGC 3 cut(s) 1373, 1406, 1634
AspS9I GGNCC 2 cut(s) 107, 788
AsuHPI GGTGA 5 cut(s) 208, 232, 397, 787, 1207
AvaII GGWCC 2 cut(s) 107, 788
AxyI CCTNAGG 1 cut(s) 1551
BamHI GGATCC 1 cut(s) 814
BanI GGYRCC 2 cut(s) 721, 1732
BarI GAAGNNNNNNTAC 2 cut(s) 1654, 1686
BbsI GAAGAC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 1728
BbvI GCAGC 2 cut(s) 755, 1360
BccI CCATC 3 cut(s) 331, 391, 1418
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 812, 1263
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 2 cut(s) 373, 1117
BfaI CTAG 1 cut(s) 914
BfmI CTRYAG 2 cut(s) 731, 1671
BfoI RGCGCY 3 cut(s) 1374, 1407, 1635
BfuI GTATCC 1 cut(s) 158
BglII AGATCT 1 cut(s) 1045
BisI GCNGC 7 cut(s) 69, 78, 81, 168, 659, 769, 1374
BlsI GCNGC 7 cut(s) 70, 79, 82, 169, 660, 770, 1375
Bme1390I CCNGG 2 cut(s) 812, 1263
Bme18I GGWCC 2 cut(s) 107, 788
BmgT120I GGNCC 2 cut(s) 107, 788
BmiI GGNNCC 4 cut(s) 192, 723, 816, 1734
BmrFI CCNGG 2 cut(s) 812, 1263
BmsI GCATC 2 cut(s) 955, 1686
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 1226
Bpu10I CCTNAGC 2 cut(s) 171, 1728
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 4 cut(s) 275, 999, 1261, 1262
BsaWI WCCGGW 3 cut(s) 393, 718, 859
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 459, 825
Bse118I RCCGGY 4 cut(s) 193, 217, 718, 1183
Bse1I ACTGG 4 cut(s) 364, 908, 1132, 1405
Bse21I CCTNAGG 1 cut(s) 1551
Bse3DI GCAATG 2 cut(s) 888, 1538
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 2 cut(s) 812, 1263
BseDI CCNNGG 4 cut(s) 275, 999, 1261, 1262
BseGI GGATG 3 cut(s) 402, 970, 1333
BseLI CCNNNNNNNGG 3 cut(s) 265, 459, 825
BseMI GCAATG 2 cut(s) 888, 1538
BseMII CTCAG 4 cut(s) 755, 806, 1542, 1719
BseNI ACTGG 4 cut(s) 364, 908, 1132, 1405
BseRI GAGGAG 2 cut(s) 117, 1240
BseXI GCAGC 2 cut(s) 755, 1360
BseYI CCCAGC 1 cut(s) 1108
BsgI GTGCAG 2 cut(s) 432, 874
BshNI GGYRCC 2 cut(s) 721, 1732
BshTI ACCGGT 1 cut(s) 718
BsiSI CCGG 6 cut(s) 194, 218, 394, 719, 860, 1184
BslFI GGGAC 2 cut(s) 1244, 1279
BslI CCNNNNNNNGG 3 cut(s) 265, 459, 825
BsmFI GGGAC 2 cut(s) 1244, 1279
BsmI GAATGC 2 cut(s) 1567, 1666
Bsp13I TCCGGA 1 cut(s) 393
Bsp19I CCATGG 1 cut(s) 999
BspCNI CTCAG 4 cut(s) 756, 805, 1543, 1720
BspEI TCCGGA 1 cut(s) 393
BspHI TCATGA 1 cut(s) 1692
BspLI GGNNCC 4 cut(s) 192, 723, 816, 1734
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 5 cut(s) 547, 809, 822, 873, 967
BspQI GCTCTTC 1 cut(s) 840
BspT107I GGYRCC 2 cut(s) 721, 1732
BsrBI CCGCTC 1 cut(s) 658
BsrDI GCAATG 2 cut(s) 888, 1538
BsrFI RCCGGY 4 cut(s) 193, 217, 718, 1183
BsrI ACTGG 4 cut(s) 364, 908, 1132, 1405
BssAI RCCGGY 4 cut(s) 193, 217, 718, 1183
BssECI CCNNGG 4 cut(s) 275, 999, 1261, 1262
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 2 cut(s) 275, 999
Bst2UI CCWGG 2 cut(s) 812, 1263
Bst4CI ACNGT 6 cut(s) 301, 554, 640, 785, 1481, 1510
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 1382
BstDEI CTNAG 7 cut(s) 171, 740, 764, 792, 1343, 1551, 1728
BstDSI CCRYGG 1 cut(s) 999
BstF5I GGATG 3 cut(s) 402, 970, 1333
BstH2I RGCGCY 3 cut(s) 1374, 1407, 1635
BstHHI GCGC 3 cut(s) 1373, 1406, 1634
BstMWI GCNNNNNNNGC 8 cut(s) 11, 74, 77, 173, 199, 249, 730, 1382
BstNI CCWGG 2 cut(s) 812, 1263
BstNSI RCATGY 1 cut(s) 1723
BstSCI CCNGG 2 cut(s) 810, 1261
BstSFI CTRYAG 2 cut(s) 731, 1671
BstV1I GCAGC 2 cut(s) 755, 1360
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 4 cut(s) 539, 814, 972, 1045
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 4 cut(s) 539, 814, 972, 1045
Bsu36I CCTNAGG 1 cut(s) 1551
BsuI GTATCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 999
BtsCI GGATG 3 cut(s) 402, 970, 1333
BtsI GCAGTG 2 cut(s) 591, 619
BtsIMutI CAGTG 4 cut(s) 559, 591, 619, 1285
CaiI CAGNNNCTG 2 cut(s) 799, 1619
CciI TCATGA 1 cut(s) 1692
CfoI GCGC 3 cut(s) 1373, 1406, 1634
Cfr10I RCCGGY 4 cut(s) 193, 217, 718, 1183
Cfr13I GGNCC 2 cut(s) 107, 788
CseI GACGC 2 cut(s) 208, 241
Csp6I GTAC 3 cut(s) 632, 1135, 1733
CspAI ACCGGT 1 cut(s) 718
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 5 cut(s) 289, 772, 1000, 1693, 1720
CviQI GTAC 3 cut(s) 632, 1135, 1733
DdeI CTNAG 7 cut(s) 171, 740, 764, 792, 1343, 1551, 1728
DraIII CACNNNGTG 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
EciI GGCGGA 1 cut(s) 1246
Eco130I CCWWGG 2 cut(s) 275, 999
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 107, 788
Eco47III AGCGCT 1 cut(s) 1633
Eco57I CTGAAG 1 cut(s) 1062
Eco81I CCTNAGG 1 cut(s) 1551
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 810, 1261
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 275, 999
ErhI CCWWGG 2 cut(s) 275, 999
FaeI CATG 5 cut(s) 292, 775, 1003, 1696, 1723
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 1244, 1279
FatI CATG 5 cut(s) 288, 771, 999, 1692, 1719
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 2 cut(s) 988, 1114
FbaI TGATCA 2 cut(s) 373, 1117
Fnu4HI GCNGC 7 cut(s) 69, 78, 81, 168, 659, 769, 1374
FokI GGATG 3 cut(s) 409, 977, 1340
Fsp4HI GCNGC 7 cut(s) 69, 78, 81, 168, 659, 769, 1374
FspBI CTAG 1 cut(s) 914
GlaI GCGC 3 cut(s) 1372, 1405, 1633
GluI GCNGC 7 cut(s) 69, 78, 81, 168, 659, 769, 1374
GsaI CCCAGC 1 cut(s) 1112
GsuI CTGGAG 1 cut(s) 1226
HaeII RGCGCY 3 cut(s) 1374, 1407, 1635
HapII CCGG 6 cut(s) 194, 218, 394, 719, 860, 1184
HgaI GACGC 2 cut(s) 208, 241
HhaI GCGC 3 cut(s) 1373, 1406, 1634
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 5 cut(s) 292, 775, 1003, 1696, 1723
Hin6I GCGC 3 cut(s) 1371, 1404, 1632
HinP1I GCGC 3 cut(s) 1371, 1404, 1632
HincII GTYRAC 2 cut(s) 322, 1513
HindII GTYRAC 2 cut(s) 322, 1513
HindIII AAGCTT 1 cut(s) 918
HpaI GTTAAC 1 cut(s) 1513
HpaII CCGG 6 cut(s) 194, 218, 394, 719, 860, 1184
HphI GGTGA 5 cut(s) 208, 232, 397, 787, 1207
Hpy166II GTNNAC 5 cut(s) 322, 788, 1506, 1513, 1559
Hpy188I TCNGA 5 cut(s) 670, 765, 795, 1593, 1606
Hpy188III TCNNGA 9 cut(s) 8, 130, 394, 914, 1246, 1421, 1550, 1679, 1693
Hpy8I GTNNAC 5 cut(s) 322, 788, 1506, 1513, 1559
Hpy99I CGWCG 4 cut(s) 131, 147, 242, 458
HpyAV CCTTC 3 cut(s) 29, 1207, 1656
HpyCH4III ACNGT 6 cut(s) 301, 554, 640, 785, 1481, 1510
HpyCH4IV ACGT 3 cut(s) 285, 409, 1561
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 74, 77, 173, 199, 249, 730, 1382
HpyF3I CTNAG 7 cut(s) 171, 740, 764, 792, 1343, 1551, 1728
HpySE526I ACGT 3 cut(s) 285, 409, 1561
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 5 cut(s) 292, 775, 1003, 1696, 1723
HspAI GCGC 3 cut(s) 1371, 1404, 1632
Kpn2I TCCGGA 1 cut(s) 393
KpnI GGTACC 1 cut(s) 1736
Ksp22I TGATCA 2 cut(s) 373, 1117
KspAI GTTAAC 1 cut(s) 1513
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 5 cut(s) 19, 190, 655, 1452, 1498
Lsp1109I GCAGC 2 cut(s) 755, 1360
LweI GCATC 2 cut(s) 955, 1686
MaeI CTAG 1 cut(s) 914
MaeII ACGT 3 cut(s) 285, 409, 1561
MaeIII GTNAC 5 cut(s) 184, 196, 436, 642, 875
MbiI CCGCTC 1 cut(s) 658
MboII GAAGA 7 cut(s) 14, 80, 293, 790, 827, 1055, 1512
MfeI CAATTG 3 cut(s) 203, 820, 949
MflI RGATCY 4 cut(s) 539, 814, 972, 1045
MlyI GAGTC 4 cut(s) 218, 500, 913, 1319
MmeI TCCRAC 1 cut(s) 942
MroI TCCGGA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 1666
MseI TTAA 4 cut(s) 1005, 1488, 1512, 1584
MslI CAYNNNNRTG 2 cut(s) 60, 649
MspI CCGG 6 cut(s) 194, 218, 394, 719, 860, 1184
MspR9I CCNGG 2 cut(s) 812, 1263
MunI CAATTG 3 cut(s) 203, 820, 949
Mva1269I GAATGC 2 cut(s) 1567, 1666
MvaI CCWGG 2 cut(s) 812, 1263
MwoI GCNNNNNNNGC 8 cut(s) 11, 74, 77, 173, 199, 249, 730, 1382
NcoI CCATGG 1 cut(s) 999
NdeI CATATG 2 cut(s) 988, 1114
NlaIII CATG 5 cut(s) 292, 775, 1003, 1696, 1723
NlaIV GGNNCC 4 cut(s) 192, 723, 816, 1734
NmuCI GTSAC 3 cut(s) 184, 196, 642
NspI RCATGY 1 cut(s) 1723
OliI CACNNNNGTG 2 cut(s) 60, 649
PagI TCATGA 1 cut(s) 1692
PasI CCCWGGG 1 cut(s) 1262
PciI ACATGT 1 cut(s) 1719
PciSI GCTCTTC 1 cut(s) 840
PctI GAATGC 2 cut(s) 1567, 1666
PdmI GAANNNNTTC 1 cut(s) 1666
PfeI GAWTC 6 cut(s) 449, 463, 599, 617, 736, 1546
PflFI GACNNNGTC 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 810
PinAI ACCGGT 1 cut(s) 718
PkrI GCNGC 7 cut(s) 70, 79, 82, 169, 660, 770, 1375
PleI GAGTC 4 cut(s) 217, 500, 912, 1318
PpsI GAGTC 4 cut(s) 217, 500, 912, 1318
PpuMI RGGWCCY 1 cut(s) 107
PscI ACATGT 1 cut(s) 1719
PsiI TTATAA 2 cut(s) 698, 1628
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 810, 1261
PspFI CCCAGC 1 cut(s) 1108
PspGI CCWGG 2 cut(s) 810, 1261
PspN4I GGNNCC 4 cut(s) 192, 723, 816, 1734
PspPI GGNCC 2 cut(s) 107, 788
PspPPI RGGWCCY 1 cut(s) 107
PstI CTGCAG 1 cut(s) 735
PstNI CAGNNNCTG 2 cut(s) 799, 1619
PsuI RGATCY 4 cut(s) 539, 814, 972, 1045
PsyI GACNNNGTC 1 cut(s) 640
RsaI GTAC 3 cut(s) 633, 1136, 1734
RsaNI GTAC 3 cut(s) 632, 1135, 1733
RseI CAYNNNNRTG 2 cut(s) 60, 649
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 4 cut(s) 1005, 1488, 1512, 1584
SatI GCNGC 7 cut(s) 69, 78, 81, 168, 659, 769, 1374
Sau96I GGNCC 2 cut(s) 107, 788
SchI GAGTC 4 cut(s) 218, 500, 913, 1319
ScrFI CCNGG 2 cut(s) 812, 1263
SfaNI GCATC 2 cut(s) 955, 1686
SfcI CTRYAG 2 cut(s) 731, 1671
SinI GGWCC 2 cut(s) 107, 788
SmiMI CAYNNNNRTG 2 cut(s) 60, 649
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SspI AATATT 1 cut(s) 484
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 2 cut(s) 810, 1261
StyI CCWWGG 2 cut(s) 275, 999
TaaI ACNGT 6 cut(s) 301, 554, 640, 785, 1481, 1510
TaiI ACGT 3 cut(s) 288, 412, 1564
TaqI TCGA 4 cut(s) 91, 456, 746, 1012
TauI GCSGC 5 cut(s) 71, 80, 83, 170, 661
TfiI GAWTC 6 cut(s) 449, 463, 599, 617, 736, 1546
Tru1I TTAA 4 cut(s) 1005, 1488, 1512, 1584
Tru9I TTAA 4 cut(s) 1005, 1488, 1512, 1584
TscAI CASTG 4 cut(s) 559, 598, 619, 1285
TseFI GTSAC 3 cut(s) 184, 196, 642
TseI GCWGC 2 cut(s) 768, 1373
Tsp45I GTSAC 3 cut(s) 184, 196, 642
TspDTI ATGAA 2 cut(s) 36, 1158
TspGWI ACGGA 4 cut(s) 115, 203, 442, 1561
TspRI CASTG 4 cut(s) 559, 598, 619, 1285
Tth111I GACNNNGTC 1 cut(s) 640
VpaK11BI GGWCC 2 cut(s) 107, 788
XapI RAATTY 1 cut(s) 1007
XbaI TCTAGA 1 cut(s) 913
XceI RCATGY 1 cut(s) 1723
XmnI GAANNNNTTC 1 cut(s) 1666
XspI CTAG 1 cut(s) 914
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.