pycom10g01880

Violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0005484
Physical Location & Seq
Forward (+)
1974649 .. 1974909
261 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01880.1

Sequence Viewer

Length: 261 bp
ATGCTGCTCGAGCTGCAGGACAATGTTATACAGGCGCTGTGCTTGTCAGTCCGGATGGGGCAATGCCCAAATGGTGTGCATAGGACGAGGTTAATTTCTGCCCTAAAGAACTGTGGAATTAAAGAGTGGGAGCCATATACAGTTAATAATGCTTCATGTTTAGGACCTCCATTGGGAATTCCCGAGGGTTCAAGTTTGCATTCAGTGATACAGGTTAAGGATCGGCAAGGGGCGTCCTTGTTGGGTTTGGCGGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3479

Protein Analysis

87

Amino Acids

9.24

Weight (kDa)

6.7

Isoelectric Point (pI)

23.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 37
Ama87I CYCGRG 2 cut(s) 8, 182
Aor13HI TCCGGA 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 4, 13
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 164
AvaI CYCGRG 2 cut(s) 8, 182
AvaII GGWCC 1 cut(s) 164
BccI CCATC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 2 cut(s) 5, 14
BlsI GCNGC 2 cut(s) 6, 15
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 2 cut(s) 8, 182
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 68
BseAI TCCGGA 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 60, 259
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 68
BsiHKCI CYCGRG 2 cut(s) 8, 182
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 1 cut(s) 199
BsoBI CYCGRG 2 cut(s) 8, 182
Bsp13I TCCGGA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 251
BspEI TCCGGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 18
BspPI GGATC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 113, 142
BstACI GRCGYC 1 cut(s) 233
BstF5I GGATG 2 cut(s) 60, 259
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 10, 13
BstSFI CTRYAG 1 cut(s) 14
BtsCI GGATG 2 cut(s) 60, 259
BtsIMutI CAGTG 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 222
CviAII CATG 1 cut(s) 156
CviJI RGCY 2 cut(s) 13, 133
CviKI_1 RGCY 2 cut(s) 13, 133
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 8, 182
EcoO109I RGGNCCY 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 177
FaeI CATG 1 cut(s) 159
FaiI YATR 5 cut(s) 29, 81, 136, 138, 157
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 5, 14
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 5, 14
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 5, 14
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 1 cut(s) 52
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 1 cut(s) 159
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HpaII CCGG 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 52, 182
HpyCH4III ACNGT 2 cut(s) 113, 142
HpyCH4V TGCA 3 cut(s) 16, 79, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 13
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 1 cut(s) 159
HspAI GCGC 1 cut(s) 35
Kpn2I TCCGGA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 2, 17, 65, 197
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MluCI AATT 3 cut(s) 93, 117, 177
MnlI CCTC 3 cut(s) 81, 177, 178
MroI TCCGGA 1 cut(s) 51
MseI TTAA 4 cut(s) 92, 120, 144, 216
MspI CCGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 10, 13
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 8
PctI GAATGC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 6, 15
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PspXI VCTCGAGB 1 cut(s) 8
PstI CTGCAG 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 37
SaqAI TTAA 4 cut(s) 92, 120, 144, 216
SatI GCNGC 2 cut(s) 5, 14
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 164
SetI ASST 4 cut(s) 15, 92, 169, 216
SfcI CTRYAG 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 93, 117, 177
SsiI CCGC 1 cut(s) 251
TaaI ACNGT 2 cut(s) 113, 142
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 93, 117, 177
Tru1I TTAA 4 cut(s) 92, 120, 144, 216
Tru9I TTAA 4 cut(s) 92, 120, 144, 216
TscAI CASTG 1 cut(s) 210
TseI GCWGC 2 cut(s) 4, 13
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.