Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8249465.1

Orthogroup ID

OG0005484

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 310

Gene Structure 310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8249465.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 310 bp

ttggacaatcgtggatgtagctgatgatcttagttggggtttgttttactactctggcgctgcaagagttgctggacaatcttatactggcgctgtgcttgtcagtccagatgcggcacacccaaatgacgtgcataggagcagattagtttccgcattggagaactgtggaattaaagagtggaagctgtttacagttaacaattcttcgtgtgctaatcctccattggggattcctgagggttcaagtttgcattccgtgatagaagttaaagatcagaaatctttgtcggatttggcagaggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3479

Protein Analysis

102

Amino Acids

10.94

Weight (kDa)

4.9

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21860
fragaria_vesca	FvH4_1g22940
malus_domestica	MD10G1028700.v1.1
prunus_persica	Prupe.6G168900_v2.0.a1
pyrus_communis	pycom10g01870 pycom10g01880
rosa_chinensis	RchiOBHm_Chr2g0117401 RchiOBHm_Chr2g0117441 RchiOBHm_Chr2g0117461
rosa_laevigata	RLG00000018348
rosa_multiflora	Rmu_co8249465.1_g000001 Rmu_sc0003454.1_g000022 Rmu_sc0009364.1_g000003 Rmu_sc0009364.1_g000007
rosa_roxburghii	Rroxscaffold_2G00126510
rosa_rugosa	Rorug02G0212700
rosa_samantha	Rh2AG267900 Rh2AG268000 Rh2BG280000 Rh2BG280200 Rh2CG272000 Rh2DG274900 Rh2DG275100 Rh2DG294100 Rh2DG294300 Rh2DG294500 Rh5AG100300
rosa_wichuraiana	Rw2G021190 Rw2G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 154
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	2 cut(s)	21, 188
AluI	AGCT	2 cut(s)	21, 188
ApeKI	GCWGC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	60, 93
AxyI	CCTNAGG	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	47
BfoI	RGCGCY	2 cut(s)	61, 94
BisI	GCNGC	2 cut(s)	61, 115
BlsI	GCNGC	2 cut(s)	62, 116
BmgBI	CACGTC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	92
Bse21I	CCTNAGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	26, 275
BspACI	CCGC	2 cut(s)	114, 154
BspCNI	CTCAG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	26, 275
Bst4CI	ACNGT	2 cut(s)	168, 197
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	30, 238
BstF5I	GGATG	1 cut(s)	20
BstH2I	RGCGCY	2 cut(s)	61, 94
BstHHI	GCGC	2 cut(s)	60, 93
BstKTI	GATC	2 cut(s)	29, 278
BstMBI	GATC	2 cut(s)	26, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	20
CfoI	GCGC	2 cut(s)	60, 93
CviJI	RGCY	2 cut(s)	21, 188
CviKI_1	RGCY	2 cut(s)	21, 188
DdeI	CTNAG	2 cut(s)	30, 238
DpnI	GATC	2 cut(s)	28, 277
DpnII	GATC	2 cut(s)	26, 275
Eco81I	CCTNAGG	1 cut(s)	238
FaiI	YATR	2 cut(s)	85, 136
Fnu4HI	GCNGC	2 cut(s)	61, 115
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	61, 115
GlaI	GCGC	2 cut(s)	59, 92
GluI	GCNGC	2 cut(s)	61, 115
HaeII	RGCGCY	2 cut(s)	61, 94
HhaI	GCGC	2 cut(s)	60, 93
Hin6I	GCGC	2 cut(s)	58, 91
HinP1I	GCGC	2 cut(s)	58, 91
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	233
HpaI	GTTAAC	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	193, 200
Hpy188I	TCNGA	2 cut(s)	280, 293
Hpy188III	TCNNGA	2 cut(s)	108, 237
Hpy8I	GTNNAC	2 cut(s)	193, 200
HpyCH4III	ACNGT	2 cut(s)	168, 197
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	63, 134, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	30, 238
HpySE526I	ACGT	1 cut(s)	130
HspAI	GCGC	2 cut(s)	58, 91
KspAI	GTTAAC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	26, 275
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	40, 58, 73, 121, 250
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	101
MaeII	ACGT	1 cut(s)	130
MalI	GATC	2 cut(s)	28, 277
MboI	GATC	2 cut(s)	26, 275
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	2 cut(s)	172, 203
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	3 cut(s)	232, 233, 296
MseI	TTAA	3 cut(s)	175, 199, 271
MslI	CAYNNNNRTG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	26, 275
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	62, 116
RseI	CAYNNNNRTG	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	175, 199, 271
SatI	GCNGC	2 cut(s)	61, 115
Sau3AI	GATC	2 cut(s)	26, 275
SetI	ASST	4 cut(s)	23, 133, 190, 307
SfaNI	GCATC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	172, 203
SsiI	CCGC	2 cut(s)	114, 154
TaaI	ACNGT	2 cut(s)	168, 197
TaiI	ACGT	1 cut(s)	133
TasI	AATT	2 cut(s)	172, 203
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	175, 199, 271
Tru9I	TTAA	3 cut(s)	175, 199, 271
TseI	GCWGC	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.